Wall clock time and date at job start Wed Apr 1 2020 02:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35676 * 120.48497 * 2 1 4 4 C 1.40173 * 119.27057 * 179.67481 * 3 2 1 5 5 N 1.31255 * 120.35709 * 0.63972 * 4 3 2 6 6 C 1.33986 * 120.88015 * 359.66841 * 5 4 3 7 7 N 1.32499 * 132.34596 * 180.02562 * 6 5 4 8 8 C 1.33472 * 109.75615 * 179.97438 * 7 6 5 9 9 C 1.48131 * 125.32259 * 179.97438 * 8 7 6 10 10 O 1.21519 * 119.99807 * 179.97438 * 9 8 7 11 11 N 1.34776 * 120.00103 * 359.97438 * 9 8 7 12 12 C 1.46501 * 120.00043 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47177 * 275.00663 * 12 11 9 14 14 C 1.53006 * 109.46959 * 299.99600 * 13 12 11 15 15 C 1.52998 * 109.47031 * 300.00468 * 14 13 12 16 16 N 1.46502 * 109.47103 * 179.97438 * 15 14 13 17 17 C 1.36940 * 119.99962 * 84.99507 * 16 15 14 18 18 H 1.08004 * 119.99742 * 0.02562 * 17 16 15 19 19 C 1.38810 * 119.99704 * 180.02562 * 17 16 15 20 20 N 1.31619 * 120.00504 * 0.02562 * 19 17 16 21 21 Si 1.86811 * 119.99470 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46914 * 60.00108 * 21 19 17 23 23 H 1.48502 * 109.46770 * 180.02562 * 21 19 17 24 24 H 1.48493 * 109.47078 * 299.99988 * 21 19 17 25 25 C 1.53001 * 109.47631 * 59.99943 * 15 14 13 26 26 C 1.52998 * 109.47132 * 300.00288 * 25 15 14 27 27 N 1.31989 * 109.35071 * 359.97438 * 8 7 6 28 28 N 1.36170 * 120.48318 * 180.28093 * 2 1 3 29 29 H 1.09002 * 109.47152 * 269.72098 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.72198 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.72179 * 1 2 3 32 32 H 1.07998 * 120.36884 * 359.97438 * 3 2 1 33 33 H 1.07997 * 119.82303 * 180.30601 * 4 3 2 34 34 H 0.97006 * 119.99693 * 0.02562 * 11 9 8 35 35 H 1.08999 * 109.46293 * 35.00450 * 12 11 9 36 36 H 1.08999 * 109.47242 * 59.99488 * 13 12 11 37 37 H 1.09000 * 109.46833 * 179.97438 * 13 12 11 38 38 H 1.08996 * 109.46902 * 180.02562 * 14 13 12 39 39 H 1.09000 * 109.46970 * 59.99922 * 14 13 12 40 40 H 1.09000 * 109.47161 * 299.99962 * 15 14 13 41 41 H 0.96996 * 119.99822 * 265.00124 * 16 15 14 42 42 H 0.97000 * 119.99782 * 179.97438 * 20 19 17 43 43 H 1.08992 * 109.47677 * 179.97438 * 25 15 14 44 44 H 1.09000 * 109.46833 * 59.99818 * 25 15 14 45 45 H 1.09000 * 109.46731 * 300.00037 * 26 25 15 46 46 H 1.08995 * 109.47528 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1692 0.0000 4 6 3.5967 1.1395 0.0069 5 7 4.2360 -0.0068 0.0007 6 6 3.5665 -1.1675 -0.0057 7 7 3.9689 -2.4299 -0.0121 8 6 2.9091 -3.2412 -0.0163 9 6 2.9637 -4.7215 -0.0244 10 8 1.9344 -5.3674 -0.0272 11 7 4.1550 -5.3519 -0.0286 12 6 4.2090 -6.8159 -0.0361 13 6 4.1032 -7.3374 1.3984 14 6 5.2660 -6.7885 2.2277 15 6 6.5907 -7.2468 1.6145 16 7 7.7041 -6.7207 2.4082 17 6 8.1342 -7.3981 3.5178 18 1 7.6529 -8.3205 3.8076 19 6 9.1888 -6.8993 4.2700 20 7 9.7750 -5.7750 3.9171 21 14 9.7759 -7.8239 5.7834 22 1 10.2275 -9.1825 5.3891 23 1 10.9053 -7.0876 6.4060 24 1 8.6614 -7.9362 6.7582 25 6 6.6964 -6.7253 0.1801 26 6 5.5337 -7.2741 -0.6492 27 7 1.8048 -2.5182 -0.0121 28 7 2.1978 -1.1735 -0.0058 29 1 -0.3633 -0.0050 1.0277 30 1 -0.3633 -0.8875 -0.5182 31 1 -0.3633 0.8925 -0.5095 32 1 1.6693 2.1124 -0.0004 33 1 4.1535 2.0649 0.0120 34 1 4.9766 -4.8362 -0.0260 35 1 3.3806 -7.2069 -0.6268 36 1 3.1595 -7.0108 1.8352 37 1 4.1430 -8.4267 1.3928 38 1 5.1909 -7.1604 3.2494 39 1 5.2259 -5.6992 2.2332 40 1 6.6309 -8.3361 1.6089 41 1 8.1365 -5.8924 2.1477 42 1 10.5117 -5.4263 4.4431 43 1 7.6403 -7.0514 -0.2566 44 1 6.6563 -5.6360 0.1857 45 1 5.5738 -8.3634 -0.6547 46 1 5.6087 -6.9023 -1.6710 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026601422.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:37 Heat of formation + Delta-G solvation = 82.514750 kcal Electronic energy + Delta-G solvation = -29683.789504 eV Core-core repulsion = 25610.010630 eV Total energy + Delta-G solvation = -4073.778875 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.17658 -41.44013 -40.00891 -39.12525 -36.42825 -36.31656 -34.47842 -33.12872 -32.29844 -32.24037 -31.71522 -29.53058 -29.39811 -26.68540 -25.52264 -25.29179 -23.56413 -23.29388 -22.43302 -21.89075 -20.31852 -19.87141 -19.36973 -18.98017 -18.42101 -18.06096 -16.98679 -16.86334 -16.57959 -16.45946 -15.96214 -15.54150 -15.24223 -15.19575 -14.99440 -14.76944 -14.51511 -14.40483 -13.92289 -13.89529 -13.83622 -13.64205 -13.35525 -13.12109 -13.09994 -12.85527 -12.78028 -12.66755 -12.20957 -12.04504 -12.02388 -11.77720 -11.69440 -11.55832 -11.32309 -11.13514 -11.11731 -10.99098 -10.82103 -10.20329 -9.96125 -8.97320 -7.91860 -5.19762 -0.78042 -0.54250 0.51561 0.53896 1.45713 1.48964 1.54787 1.61490 1.88659 2.13615 2.28721 2.56987 2.82103 3.18412 3.28589 3.40433 3.71675 3.80562 3.84690 3.88423 4.07694 4.25825 4.28070 4.30752 4.38234 4.42627 4.49143 4.54126 4.59846 4.63559 4.64046 4.68082 4.76828 4.94754 4.99946 5.05878 5.10928 5.14444 5.19897 5.25877 5.26257 5.39141 5.51251 5.56759 5.64737 6.07713 6.27117 6.30693 6.55134 6.82454 7.35861 8.14415 8.36528 9.31633 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012132 B = 0.002646 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.390003 B =10578.558387 C =12025.795042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.168 3.832 3 C -0.187 4.187 4 C 0.222 3.778 5 N -0.493 5.493 6 C 0.427 3.573 7 N -0.534 5.534 8 C 0.223 3.777 9 C 0.611 3.389 10 O -0.539 6.539 11 N -0.681 5.681 12 C 0.148 3.852 13 C -0.120 4.120 14 C -0.123 4.123 15 C 0.174 3.826 16 N -0.738 5.738 17 C -0.236 4.236 18 H 0.074 0.926 19 C -0.079 4.079 20 N -0.971 5.971 21 Si 0.970 3.030 22 H -0.276 1.276 23 H -0.296 1.296 24 H -0.282 1.282 25 C -0.119 4.119 26 C -0.109 4.109 27 N -0.294 5.294 28 N -0.329 5.329 29 H 0.105 0.895 30 H 0.067 0.933 31 H 0.142 0.858 32 H 0.237 0.763 33 H 0.245 0.755 34 H 0.414 0.586 35 H 0.103 0.897 36 H 0.050 0.950 37 H 0.094 0.906 38 H 0.036 0.964 39 H 0.034 0.966 40 H 0.050 0.950 41 H 0.371 0.629 42 H 0.249 0.751 43 H 0.067 0.933 44 H 0.050 0.950 45 H 0.104 0.896 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.661 17.197 -13.766 30.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.052 3.948 3 C -0.211 4.211 4 C 0.040 3.960 5 N -0.211 5.211 6 C 0.067 3.933 7 N -0.269 5.269 8 C -0.061 4.061 9 C 0.392 3.608 10 O -0.414 6.414 11 N -0.333 5.333 12 C 0.045 3.955 13 C -0.159 4.159 14 C -0.163 4.163 15 C 0.066 3.934 16 N -0.377 5.377 17 C -0.368 4.368 18 H 0.092 0.908 19 C -0.271 4.271 20 N -0.622 5.622 21 Si 0.799 3.201 22 H -0.202 1.202 23 H -0.223 1.223 24 H -0.208 1.208 25 C -0.157 4.157 26 C -0.147 4.147 27 N -0.129 5.129 28 N -0.111 5.111 29 H 0.123 0.877 30 H 0.086 0.914 31 H 0.161 0.839 32 H 0.254 0.746 33 H 0.261 0.739 34 H 0.252 0.748 35 H 0.121 0.879 36 H 0.069 0.931 37 H 0.112 0.888 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.068 0.932 41 H 0.202 0.798 42 H 0.058 0.942 43 H 0.086 0.914 44 H 0.069 0.931 45 H 0.122 0.878 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -20.783 15.706 -13.651 29.410 hybrid contribution 0.500 0.361 1.251 1.395 sum -20.284 16.067 -12.399 28.694 Atomic orbital electron populations 1.21224 0.83955 1.06590 1.05801 1.21990 0.98687 0.81107 0.92967 1.22634 0.95045 0.98807 1.04584 1.24758 0.93258 0.95613 0.82407 1.68227 1.37236 0.95583 1.20029 1.22913 0.79201 0.93968 0.97190 1.70720 1.29017 0.97887 1.29303 1.24123 0.86468 0.96858 0.98674 1.16403 0.84791 0.82171 0.77459 1.90789 1.34290 1.65452 1.50896 1.45974 1.07376 1.08747 1.71226 1.21269 1.00217 0.77045 0.96944 1.21876 0.97297 1.01942 0.94761 1.22035 0.96284 0.99348 0.98649 1.20470 0.86141 0.96605 0.90201 1.42662 1.37602 1.27606 1.29831 1.19590 1.11046 1.03864 1.02282 0.90778 1.25542 0.99976 0.98809 1.02787 1.69821 1.26985 1.23027 1.42364 0.85259 0.77249 0.77891 0.79677 1.20156 1.22259 1.20835 1.21722 0.99237 1.00040 0.94748 1.21768 0.90734 1.03052 0.99114 1.78657 1.19614 0.84603 1.30048 1.49122 1.09202 1.06447 1.46286 0.87714 0.91447 0.83937 0.74622 0.73924 0.74823 0.87941 0.93075 0.88757 0.94561 0.94679 0.93239 0.79807 0.94177 0.91445 0.93092 0.87789 0.89196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 10.13 71.24 0.72 0.00 16 2 C 0.17 2.12 6.86 41.29 0.28 2.41 16 3 C -0.19 -0.68 9.72 22.15 0.22 -0.46 16 4 C 0.22 1.82 11.27 85.25 0.96 2.78 16 5 N -0.49 -11.22 10.48 -197.54 -2.07 -13.29 16 6 C 0.43 12.62 8.99 261.57 2.35 14.97 16 7 N -0.53 -18.70 10.89 -192.61 -2.10 -20.79 16 8 C 0.22 7.74 7.92 137.40 1.09 8.82 16 9 C 0.61 21.01 7.81 86.87 0.68 21.69 16 10 O -0.54 -20.38 16.73 -3.77 -0.06 -20.44 16 11 N -0.68 -20.75 4.23 -445.13 -1.88 -22.63 16 12 C 0.15 3.96 2.78 44.99 0.13 4.08 16 13 C -0.12 -3.60 5.60 30.60 0.17 -3.43 16 14 C -0.12 -4.70 5.34 30.60 0.16 -4.53 16 15 C 0.17 6.92 2.77 44.99 0.12 7.05 16 16 N -0.74 -38.38 5.12 -322.93 -1.65 -40.04 16 17 C -0.24 -13.47 9.93 84.03 0.83 -12.64 16 18 H 0.07 4.07 7.83 -2.91 -0.02 4.04 16 19 C -0.08 -4.69 5.50 84.86 0.47 -4.23 16 20 N -0.97 -61.41 13.06 21.65 0.28 -61.12 16 21 Si 0.97 47.64 29.55 68.60 2.03 49.66 16 22 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 23 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 24 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 25 C -0.12 -3.80 5.22 30.59 0.16 -3.64 16 26 C -0.11 -2.55 5.61 30.59 0.17 -2.38 16 27 N -0.29 -9.47 12.67 -52.60 -0.67 -10.14 16 28 N -0.33 -8.30 3.91 -185.76 -0.73 -9.03 16 29 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.14 -0.43 8.09 -2.38 -0.02 -0.45 16 32 H 0.24 -2.06 8.06 -2.91 -0.02 -2.08 16 33 H 0.24 -0.72 8.06 -2.91 -0.02 -0.74 16 34 H 0.41 12.96 6.54 -92.70 -0.61 12.35 16 35 H 0.10 2.56 7.58 -2.39 -0.02 2.54 16 36 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.03 1.45 7.60 -2.39 -0.02 1.44 16 40 H 0.05 1.96 8.08 -2.39 -0.02 1.94 16 41 H 0.37 20.88 7.80 -92.71 -0.72 20.16 16 42 H 0.25 15.35 8.31 -92.71 -0.77 14.58 16 43 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.05 1.70 6.51 -2.39 -0.02 1.69 16 45 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 46 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -89.35 382.98 1.37 -87.98 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: -0.29 Total: 29.35 kcal Atomic # 6 Polarization: 21.98 SS G_CDS: 8.51 Total: 30.49 kcal Atomic # 7 Polarization: -168.23 SS G_CDS: -8.81 Total: -177.04 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.06 Total: -20.44 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 2.03 Total: 49.66 kcal Total: -89.35 1.37 -87.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026601422.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.493 kcal (2) G-P(sol) polarization free energy of solvation -89.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds