Wall clock time and date at job start Wed Apr 1 2020 03:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32441 * 125.18547 * 2 1 4 4 C 1.32882 * 109.81108 * 180.02562 * 3 2 1 5 5 N 1.33737 * 132.44300 * 180.02562 * 4 3 2 6 6 C 1.31203 * 121.19378 * 179.97438 * 5 4 3 7 7 C 1.40106 * 120.45645 * 359.97438 * 6 5 4 8 8 C 1.36992 * 119.04970 * 0.02562 * 7 6 5 9 9 C 1.47717 * 120.63523 * 180.02562 * 8 7 6 10 10 O 1.21558 * 120.00001 * 316.57604 * 9 8 7 11 11 N 1.34776 * 120.00203 * 136.57397 * 9 8 7 12 12 C 1.46940 * 120.60136 * 356.15131 * 11 9 8 13 13 C 1.53193 * 108.77227 * 233.53237 * 12 11 9 14 14 C 1.53038 * 109.33946 * 305.41677 * 13 12 11 15 15 C 1.53042 * 109.53843 * 61.34933 * 14 13 12 16 16 H 1.09003 * 109.49955 * 58.61576 * 15 14 13 17 17 N 1.46504 * 109.49846 * 178.68378 * 15 14 13 18 18 C 1.46503 * 119.99887 * 60.00045 * 17 15 14 19 19 C 1.36935 * 119.99804 * 239.99719 * 17 15 14 20 20 H 1.07995 * 119.99867 * 24.40013 * 19 17 15 21 21 C 1.38811 * 119.99861 * 204.39613 * 19 17 15 22 22 N 1.31618 * 120.00118 * 14.20317 * 21 19 17 23 23 Si 1.86800 * 119.99947 * 194.20750 * 21 19 17 24 24 H 1.48505 * 109.47006 * 59.99744 * 23 21 19 25 25 H 1.48499 * 109.47074 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47279 * 299.99964 * 23 21 19 27 27 C 1.46915 * 120.63336 * 176.13109 * 11 9 8 28 28 N 1.36684 * 107.17925 * 0.25497 * 4 3 2 29 29 N 1.31360 * 125.18308 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.47038 * 89.96987 * 1 2 3 31 31 H 1.08997 * 109.47194 * 209.96764 * 1 2 3 32 32 H 1.09000 * 109.46780 * 329.97153 * 1 2 3 33 33 H 1.08001 * 119.77427 * 180.02562 * 6 5 4 34 34 H 1.07998 * 120.47340 * 180.02562 * 7 6 5 35 35 H 1.09001 * 109.55616 * 113.76605 * 12 11 9 36 36 H 1.08997 * 109.61863 * 353.33775 * 12 11 9 37 37 H 1.08994 * 109.49729 * 185.45148 * 13 12 11 38 38 H 1.08994 * 109.49502 * 65.38102 * 13 12 11 39 39 H 1.08997 * 109.45941 * 181.36951 * 14 13 12 40 40 H 1.09000 * 109.45916 * 301.32888 * 14 13 12 41 41 H 1.08995 * 109.47007 * 91.95754 * 18 17 15 42 42 H 1.08998 * 109.46667 * 211.95602 * 18 17 15 43 43 H 1.09003 * 109.47136 * 331.95754 * 18 17 15 44 44 H 0.97003 * 120.00124 * 180.02562 * 22 21 19 45 45 H 1.09002 * 109.58766 * 6.64623 * 27 11 9 46 46 H 1.09008 * 109.58930 * 246.22289 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2702 1.0824 0.0000 4 6 3.5514 0.7301 -0.0006 5 7 4.6833 1.4424 -0.0003 6 6 5.8562 0.8545 -0.0005 7 6 5.9499 -0.5434 -0.0004 8 6 4.7994 -1.2872 -0.0007 9 6 4.8574 -2.7632 0.0000 10 8 5.6455 -3.3409 -0.7230 11 7 4.0364 -3.4695 0.8023 12 6 3.1381 -2.7850 1.7422 13 6 3.3683 -3.3527 3.1464 14 6 3.2023 -4.8736 3.1116 15 6 4.2435 -5.4808 2.1684 16 1 5.2435 -5.2127 2.5094 17 7 4.1042 -6.9391 2.1600 18 6 2.8429 -7.5521 1.7359 19 6 5.1529 -7.7293 2.5485 20 1 5.9091 -7.3355 3.2114 21 6 5.2440 -9.0364 2.0902 22 7 4.4997 -9.4329 1.0797 23 14 6.4230 -10.2327 2.9077 24 1 6.0644 -10.3793 4.3414 25 1 6.3309 -11.5545 2.2373 26 1 7.8104 -9.7155 2.7949 27 6 4.0225 -4.9378 0.7531 28 7 3.5945 -0.6360 -0.0067 29 7 2.2639 -1.0736 -0.0005 30 1 -0.3633 0.0005 -1.0277 31 1 -0.3633 -0.8902 0.5133 32 1 -0.3633 0.8897 0.5143 33 1 6.7558 1.4522 0.0001 34 1 6.9152 -1.0277 -0.0002 35 1 2.1028 -2.9530 1.4455 36 1 3.3520 -1.7163 1.7405 37 1 2.6419 -2.9231 3.8361 38 1 4.3764 -3.1043 3.4783 39 1 3.3418 -5.2771 4.1145 40 1 2.2021 -5.1217 2.7565 41 1 2.8826 -7.7627 0.6672 42 1 2.6884 -8.4815 2.2839 43 1 2.0194 -6.8680 1.9411 44 1 4.5631 -10.3465 0.7597 45 1 4.8201 -5.2890 0.0983 46 1 3.0594 -5.2818 0.3759 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027647771.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:08 Heat of formation + Delta-G solvation = 151.353032 kcal Electronic energy + Delta-G solvation = -31042.422844 eV Core-core repulsion = 26971.629021 eV Total energy + Delta-G solvation = -4070.793823 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.35511 -40.31020 -39.07833 -37.61292 -35.43957 -34.76815 -32.63079 -32.44757 -31.38490 -31.11263 -29.22864 -28.97488 -26.40097 -26.04785 -24.85609 -24.25144 -23.44112 -21.87330 -21.70003 -20.05090 -19.00738 -18.81615 -18.42152 -17.49988 -16.93824 -16.79510 -16.03323 -15.62873 -15.26170 -14.79670 -14.29465 -14.25973 -14.04180 -14.02390 -13.85536 -13.63936 -13.58030 -13.19011 -12.88399 -12.83622 -12.68622 -12.60868 -12.37389 -12.01234 -11.97272 -11.23380 -11.10639 -10.86349 -10.83678 -10.69374 -10.50406 -10.45525 -10.40880 -10.29001 -10.05254 -9.91280 -9.87379 -9.81164 -9.15568 -8.67208 -8.49432 -6.81091 -5.79228 -3.26320 -0.26174 0.31811 1.33250 2.03553 2.54361 2.63398 2.88697 3.04463 3.36442 3.41864 3.42518 3.58028 3.83558 4.17427 4.36937 4.43903 4.55860 4.80432 4.84647 5.04011 5.17307 5.19885 5.20187 5.33256 5.36634 5.40956 5.42818 5.57483 5.64004 5.69058 5.78517 5.86351 5.88551 5.97429 6.04743 6.12202 6.26021 6.36635 6.45838 6.68667 6.80600 6.86102 6.98043 7.28198 7.29332 7.56692 7.63210 7.75520 7.85337 8.34408 9.16574 9.78778 10.28324 11.25908 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.018166 B = 0.003012 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.932298 B = 9293.684300 C =10081.151997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.269 3.731 3 N -0.519 5.519 4 C 0.441 3.559 5 N -0.447 5.447 6 C 0.211 3.789 7 C -0.170 4.170 8 C 0.170 3.830 9 C 0.552 3.448 10 O -0.510 6.510 11 N -0.574 5.574 12 C 0.117 3.883 13 C -0.133 4.133 14 C -0.133 4.133 15 C 0.170 3.830 16 H 0.066 0.934 17 N -0.588 5.588 18 C 0.159 3.841 19 C -0.262 4.262 20 H 0.068 0.932 21 C 0.007 3.993 22 N -0.902 5.902 23 Si 0.906 3.094 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.282 1.282 27 C 0.097 3.903 28 N -0.315 5.315 29 N -0.318 5.318 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.200 0.800 34 H 0.184 0.816 35 H 0.083 0.917 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.027 0.973 42 H 0.045 0.955 43 H 0.001 0.999 44 H 0.254 0.746 45 H 0.096 0.904 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.471 20.747 0.213 21.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.011 4.011 3 N -0.252 5.252 4 C 0.081 3.919 5 N -0.161 5.161 6 C 0.024 3.976 7 C -0.196 4.196 8 C 0.048 3.952 9 C 0.335 3.665 10 O -0.385 6.385 11 N -0.306 5.306 12 C -0.006 4.006 13 C -0.172 4.172 14 C -0.172 4.172 15 C 0.060 3.940 16 H 0.085 0.915 17 N -0.309 5.309 18 C 0.015 3.985 19 C -0.391 4.391 20 H 0.085 0.915 21 C -0.192 4.192 22 N -0.546 5.546 23 Si 0.735 3.265 24 H -0.210 1.210 25 H -0.216 1.216 26 H -0.208 1.208 27 C -0.026 4.026 28 N -0.096 5.096 29 N -0.151 5.151 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.216 0.784 34 H 0.201 0.799 35 H 0.101 0.899 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.045 0.955 42 H 0.064 0.936 43 H 0.019 0.981 44 H 0.065 0.935 45 H 0.114 0.886 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.963 20.699 -0.262 21.076 hybrid contribution 0.970 -1.425 0.250 1.742 sum -2.994 19.274 -0.013 19.505 Atomic orbital electron populations 1.20270 0.82484 1.04869 1.04557 1.24680 0.98760 0.84855 0.92850 1.70705 0.96475 1.28535 1.29484 1.22799 0.93742 0.78286 0.97104 1.67811 0.95682 1.36338 1.16297 1.23650 0.95236 0.91876 0.86808 1.22262 0.98602 0.94977 1.03728 1.21034 0.82584 0.95030 0.96520 1.17590 0.82519 0.84075 0.82292 1.90905 1.37549 1.68940 1.41112 1.48251 1.37197 1.08560 1.36566 1.21974 0.94655 0.95188 0.88795 1.21972 1.02005 0.97727 0.95502 1.22088 1.00976 0.92680 1.01478 1.20643 0.97113 0.85350 0.90896 0.91548 1.43917 1.11456 0.98482 1.77078 1.20790 0.84080 0.94793 0.98882 1.19152 1.03801 0.93794 1.22387 0.91450 1.25061 0.98805 0.98937 0.96418 1.70052 1.42421 1.17375 1.24767 0.86326 0.80803 0.80416 0.78926 1.21016 1.21590 1.20826 1.22795 1.03345 0.74469 1.01942 1.49032 1.06094 1.08935 1.45589 1.78897 0.82885 1.20262 1.33039 0.88981 0.89061 0.88836 0.78363 0.79886 0.89911 0.91871 0.91102 0.91901 0.91417 0.92040 0.95452 0.93614 0.98071 0.93549 0.88587 0.91241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.47 10.51 36.01 0.38 -0.09 16 2 C 0.27 3.27 8.09 -157.01 -1.27 2.00 16 3 N -0.52 -7.22 11.24 -11.80 -0.13 -7.35 16 4 C 0.44 5.99 9.00 -323.14 -2.91 3.08 16 5 N -0.45 -5.04 10.45 -13.84 -0.14 -5.19 16 6 C 0.21 1.51 11.26 -17.12 -0.19 1.32 16 7 C -0.17 -1.49 9.70 -39.33 -0.38 -1.88 16 8 C 0.17 2.19 5.67 -82.15 -0.47 1.73 16 9 C 0.55 8.87 7.38 -12.39 -0.09 8.78 16 10 O -0.51 -9.70 16.38 5.31 0.09 -9.61 16 11 N -0.57 -9.21 2.97 -173.92 -0.52 -9.73 16 12 C 0.12 1.59 4.50 -3.70 -0.02 1.57 16 13 C -0.13 -1.74 6.08 -26.61 -0.16 -1.90 16 14 C -0.13 -2.14 5.12 -26.69 -0.14 -2.28 16 15 C 0.17 3.34 2.74 -67.80 -0.19 3.16 16 16 H 0.07 1.38 7.88 -51.93 -0.41 0.97 16 17 N -0.59 -14.19 2.81 -173.34 -0.49 -14.67 16 18 C 0.16 3.76 7.94 59.85 0.48 4.23 16 19 C -0.26 -7.04 9.55 -15.06 -0.14 -7.18 16 20 H 0.07 1.77 7.84 -52.49 -0.41 1.36 16 21 C 0.01 0.20 5.05 -17.43 -0.09 0.11 16 22 N -0.90 -25.90 10.89 55.49 0.60 -25.30 16 23 Si 0.91 21.56 29.58 -169.99 -5.03 16.53 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 C 0.10 1.84 5.80 -3.71 -0.02 1.82 16 28 N -0.31 -4.29 2.79 -10.51 -0.03 -4.32 16 29 N -0.32 -4.36 9.31 32.39 0.30 -4.06 16 30 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.20 0.40 8.06 -52.49 -0.42 -0.02 16 34 H 0.18 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.08 1.13 7.54 -51.93 -0.39 0.74 16 36 H 0.06 0.84 4.78 -51.93 -0.25 0.60 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 40 H 0.06 1.00 6.71 -51.93 -0.35 0.65 16 41 H 0.03 0.70 7.49 -51.93 -0.39 0.31 16 42 H 0.05 1.17 7.26 -51.93 -0.38 0.79 16 43 H 0.00 0.02 6.45 -51.93 -0.34 -0.32 16 44 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 45 H 0.10 2.11 7.00 -51.93 -0.36 1.75 16 46 H 0.07 1.34 7.51 -51.92 -0.39 0.95 16 LS Contribution 369.87 15.07 5.57 5.57 Total: -1.00 -34.33 369.87 -11.16 -45.49 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -6.18 Total: -1.85 kcal Atomic # 6 Polarization: 19.68 SS G_CDS: -5.21 Total: 14.47 kcal Atomic # 7 Polarization: -70.21 SS G_CDS: -0.40 Total: -70.62 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.09 Total: -9.61 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.33 -11.16 -45.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027647771.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.848 kcal (2) G-P(sol) polarization free energy of solvation -34.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds