Wall clock time and date at job start Wed Apr 1 2020 03:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32441 * 125.18547 * 2 1 4 4 C 1.32882 * 109.81108 * 180.02562 * 3 2 1 5 5 N 1.33737 * 132.44300 * 180.02562 * 4 3 2 6 6 C 1.31203 * 121.19378 * 179.97438 * 5 4 3 7 7 C 1.40106 * 120.45645 * 359.97438 * 6 5 4 8 8 C 1.36992 * 119.04970 * 0.02562 * 7 6 5 9 9 C 1.47717 * 120.63523 * 180.02562 * 8 7 6 10 10 O 1.21558 * 120.00001 * 316.57604 * 9 8 7 11 11 N 1.34776 * 120.00203 * 136.57397 * 9 8 7 12 12 C 1.46940 * 120.60136 * 356.15131 * 11 9 8 13 13 C 1.53193 * 108.77227 * 233.53237 * 12 11 9 14 14 C 1.53038 * 109.33946 * 305.41677 * 13 12 11 15 15 C 1.53042 * 109.53843 * 61.34933 * 14 13 12 16 16 H 1.09003 * 109.49955 * 58.61576 * 15 14 13 17 17 N 1.46504 * 109.49846 * 178.68378 * 15 14 13 18 18 C 1.46503 * 119.99887 * 60.00045 * 17 15 14 19 19 C 1.36935 * 119.99804 * 239.99719 * 17 15 14 20 20 H 1.07995 * 119.99867 * 24.40013 * 19 17 15 21 21 C 1.38811 * 119.99861 * 204.39613 * 19 17 15 22 22 N 1.31618 * 120.00118 * 14.20317 * 21 19 17 23 23 Si 1.86800 * 119.99947 * 194.20750 * 21 19 17 24 24 H 1.48505 * 109.47006 * 59.99744 * 23 21 19 25 25 H 1.48499 * 109.47074 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47279 * 299.99964 * 23 21 19 27 27 C 1.46915 * 120.63336 * 176.13109 * 11 9 8 28 28 N 1.36684 * 107.17925 * 0.25497 * 4 3 2 29 29 N 1.31360 * 125.18308 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.47038 * 89.96987 * 1 2 3 31 31 H 1.08997 * 109.47194 * 209.96764 * 1 2 3 32 32 H 1.09000 * 109.46780 * 329.97153 * 1 2 3 33 33 H 1.08001 * 119.77427 * 180.02562 * 6 5 4 34 34 H 1.07998 * 120.47340 * 180.02562 * 7 6 5 35 35 H 1.09001 * 109.55616 * 113.76605 * 12 11 9 36 36 H 1.08997 * 109.61863 * 353.33775 * 12 11 9 37 37 H 1.08994 * 109.49729 * 185.45148 * 13 12 11 38 38 H 1.08994 * 109.49502 * 65.38102 * 13 12 11 39 39 H 1.08997 * 109.45941 * 181.36951 * 14 13 12 40 40 H 1.09000 * 109.45916 * 301.32888 * 14 13 12 41 41 H 1.08995 * 109.47007 * 91.95754 * 18 17 15 42 42 H 1.08998 * 109.46667 * 211.95602 * 18 17 15 43 43 H 1.09003 * 109.47136 * 331.95754 * 18 17 15 44 44 H 0.97003 * 120.00124 * 180.02562 * 22 21 19 45 45 H 1.09002 * 109.58766 * 6.64623 * 27 11 9 46 46 H 1.09008 * 109.58930 * 246.22289 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2702 1.0824 0.0000 4 6 3.5514 0.7301 -0.0006 5 7 4.6833 1.4424 -0.0003 6 6 5.8562 0.8545 -0.0005 7 6 5.9499 -0.5434 -0.0004 8 6 4.7994 -1.2872 -0.0007 9 6 4.8574 -2.7632 0.0000 10 8 5.6455 -3.3409 -0.7230 11 7 4.0364 -3.4695 0.8023 12 6 3.1381 -2.7850 1.7422 13 6 3.3683 -3.3527 3.1464 14 6 3.2023 -4.8736 3.1116 15 6 4.2435 -5.4808 2.1684 16 1 5.2435 -5.2127 2.5094 17 7 4.1042 -6.9391 2.1600 18 6 2.8429 -7.5521 1.7359 19 6 5.1529 -7.7293 2.5485 20 1 5.9091 -7.3355 3.2114 21 6 5.2440 -9.0364 2.0902 22 7 4.4997 -9.4329 1.0797 23 14 6.4230 -10.2327 2.9077 24 1 6.0644 -10.3793 4.3414 25 1 6.3309 -11.5545 2.2373 26 1 7.8104 -9.7155 2.7949 27 6 4.0225 -4.9378 0.7531 28 7 3.5945 -0.6360 -0.0067 29 7 2.2639 -1.0736 -0.0005 30 1 -0.3633 0.0005 -1.0277 31 1 -0.3633 -0.8902 0.5133 32 1 -0.3633 0.8897 0.5143 33 1 6.7558 1.4522 0.0001 34 1 6.9152 -1.0277 -0.0002 35 1 2.1028 -2.9530 1.4455 36 1 3.3520 -1.7163 1.7405 37 1 2.6419 -2.9231 3.8361 38 1 4.3764 -3.1043 3.4783 39 1 3.3418 -5.2771 4.1145 40 1 2.2021 -5.1217 2.7565 41 1 2.8826 -7.7627 0.6672 42 1 2.6884 -8.4815 2.2839 43 1 2.0194 -6.8680 1.9411 44 1 4.5631 -10.3465 0.7597 45 1 4.8201 -5.2890 0.0983 46 1 3.0594 -5.2818 0.3759 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027647771.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:07 Heat of formation + Delta-G solvation = 131.510227 kcal Electronic energy + Delta-G solvation = -31043.283292 eV Core-core repulsion = 26971.629021 eV Total energy + Delta-G solvation = -4071.654271 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.23627 -41.55280 -39.99766 -39.02211 -36.98680 -35.85547 -33.99786 -33.40400 -32.99398 -32.01506 -30.69483 -29.86664 -28.07000 -27.53204 -25.92341 -25.46230 -24.80117 -23.24996 -22.70034 -21.33679 -20.28805 -19.79218 -19.42751 -18.79074 -18.44938 -17.87284 -17.39739 -16.93690 -16.45823 -16.27117 -15.78971 -15.44773 -15.30843 -15.12187 -14.78057 -14.74573 -14.58864 -14.43739 -14.28796 -14.04615 -13.88708 -13.68204 -13.49503 -13.28867 -12.98141 -12.86793 -12.76595 -12.53047 -12.29070 -12.22231 -12.18142 -11.99241 -11.83364 -11.71120 -11.49059 -11.32925 -11.05497 -10.74556 -10.64803 -10.09033 -9.93758 -8.79830 -7.86911 -5.36615 -1.10939 -0.47394 0.42832 1.10625 1.39692 1.45871 1.48421 1.50941 1.54711 2.12309 2.20591 2.48279 2.59385 2.94242 3.27222 3.44156 3.48577 3.69308 3.76066 3.87389 3.88194 3.91673 4.10262 4.17057 4.24976 4.43731 4.52890 4.64040 4.67234 4.68857 4.69502 4.71949 4.75098 4.84854 4.86734 4.93118 4.99204 5.11550 5.18482 5.22768 5.28302 5.31085 5.45500 5.60285 5.66198 5.99543 6.18824 6.29820 6.58435 6.69967 7.11199 7.81402 8.25871 9.16202 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.018166 B = 0.003012 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.932298 B = 9293.684300 C =10081.151997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.266 3.734 3 N -0.545 5.545 4 C 0.428 3.572 5 N -0.464 5.464 6 C 0.236 3.764 7 C -0.137 4.137 8 C 0.133 3.867 9 C 0.553 3.447 10 O -0.550 6.550 11 N -0.577 5.577 12 C 0.124 3.876 13 C -0.123 4.123 14 C -0.120 4.120 15 C 0.170 3.830 16 H 0.053 0.947 17 N -0.604 5.604 18 C 0.177 3.823 19 C -0.271 4.271 20 H 0.069 0.931 21 C -0.047 4.047 22 N -0.935 5.935 23 Si 0.969 3.031 24 H -0.276 1.276 25 H -0.295 1.295 26 H -0.277 1.277 27 C 0.115 3.885 28 N -0.322 5.322 29 N -0.347 5.347 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.107 0.893 33 H 0.260 0.740 34 H 0.211 0.789 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.102 0.898 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.063 0.937 41 H -0.002 1.002 42 H 0.020 0.980 43 H 0.035 0.965 44 H 0.249 0.751 45 H 0.058 0.942 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.820 23.469 1.539 23.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.014 4.014 3 N -0.279 5.279 4 C 0.068 3.932 5 N -0.179 5.179 6 C 0.050 3.950 7 C -0.163 4.163 8 C 0.013 3.987 9 C 0.338 3.662 10 O -0.428 6.428 11 N -0.307 5.307 12 C 0.002 3.998 13 C -0.161 4.161 14 C -0.160 4.160 15 C 0.062 3.938 16 H 0.072 0.928 17 N -0.326 5.326 18 C 0.032 3.968 19 C -0.401 4.401 20 H 0.087 0.913 21 C -0.243 4.243 22 N -0.580 5.580 23 Si 0.797 3.203 24 H -0.201 1.201 25 H -0.221 1.221 26 H -0.202 1.202 27 C -0.009 4.009 28 N -0.104 5.104 29 N -0.180 5.180 30 H 0.122 0.878 31 H 0.121 0.879 32 H 0.125 0.875 33 H 0.275 0.725 34 H 0.227 0.773 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.121 0.879 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.016 0.984 42 H 0.038 0.962 43 H 0.053 0.947 44 H 0.058 0.942 45 H 0.076 0.924 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.320 23.472 1.093 23.731 hybrid contribution 0.864 -2.117 -0.201 2.295 sum -2.457 21.355 0.891 21.514 Atomic orbital electron populations 1.20479 0.79783 1.06091 1.05637 1.25415 1.00203 0.84085 0.91683 1.70702 0.97086 1.29419 1.30668 1.23135 0.94424 0.78379 0.97269 1.67960 0.96129 1.36546 1.17259 1.24661 0.95716 0.91372 0.83216 1.22835 0.98251 0.95744 0.99428 1.20801 0.83837 0.93142 1.00883 1.17994 0.81431 0.85636 0.81143 1.90875 1.39152 1.70360 1.42423 1.48199 1.37883 1.07250 1.37385 1.22046 0.94069 0.95371 0.88307 1.21930 1.03281 0.95133 0.95768 1.21905 0.99395 0.94734 0.99924 1.20758 0.97877 0.83236 0.91969 0.92834 1.44110 1.11040 1.00230 1.77238 1.20503 0.85207 0.94550 0.96557 1.19491 1.04154 0.94446 1.21979 0.91288 1.25819 1.00758 1.00592 0.97140 1.70220 1.44275 1.17241 1.26280 0.85327 0.78983 0.77915 0.78118 1.20138 1.22092 1.20234 1.22228 1.01412 0.76792 1.00509 1.48970 1.06046 1.09009 1.46325 1.78812 0.83329 1.21415 1.34459 0.87831 0.87906 0.87455 0.72466 0.77257 0.89809 0.90955 0.87942 0.91526 0.91650 0.91806 0.98380 0.96151 0.94665 0.94171 0.92361 0.91928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.82 10.51 71.24 0.75 -0.07 16 2 C 0.27 6.24 8.09 138.69 1.12 7.36 16 3 N -0.54 -14.63 11.24 -191.24 -2.15 -16.78 16 4 C 0.43 10.98 9.00 261.60 2.35 13.33 16 5 N -0.46 -9.15 10.45 -197.68 -2.07 -11.21 16 6 C 0.24 2.36 11.26 85.24 0.96 3.32 16 7 C -0.14 -1.98 9.70 22.43 0.22 -1.76 16 8 C 0.13 3.27 5.67 40.56 0.23 3.50 16 9 C 0.55 17.84 7.38 86.75 0.64 18.48 16 10 O -0.55 -21.52 16.38 -3.90 -0.06 -21.59 16 11 N -0.58 -18.58 2.97 -822.44 -2.44 -21.03 16 12 C 0.12 3.21 4.50 86.36 0.39 3.60 16 13 C -0.12 -2.91 6.08 30.67 0.19 -2.73 16 14 C -0.12 -3.73 5.12 30.62 0.16 -3.57 16 15 C 0.17 6.78 2.74 45.07 0.12 6.90 16 16 H 0.05 2.25 7.88 -2.39 -0.02 2.23 16 17 N -0.60 -29.83 2.81 -702.33 -1.97 -31.80 16 18 C 0.18 8.58 7.94 127.77 1.01 9.60 16 19 C -0.27 -14.83 9.55 84.03 0.80 -14.03 16 20 H 0.07 3.67 7.84 -2.91 -0.02 3.65 16 21 C -0.05 -2.65 5.05 84.86 0.43 -2.22 16 22 N -0.93 -55.53 10.89 21.65 0.24 -55.30 16 23 Si 0.97 45.03 29.58 68.60 2.03 47.06 16 24 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 25 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 26 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 27 C 0.11 4.51 5.80 86.37 0.50 5.01 16 28 N -0.32 -8.43 2.79 -187.16 -0.52 -8.95 16 29 N -0.35 -9.30 9.31 -51.45 -0.48 -9.77 16 30 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.26 -0.66 8.06 -2.91 -0.02 -0.69 16 34 H 0.21 1.87 8.06 -2.91 -0.02 1.85 16 35 H 0.08 2.18 7.54 -2.39 -0.02 2.16 16 36 H 0.07 1.82 4.78 -2.39 -0.01 1.81 16 37 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.06 1.96 6.71 -2.39 -0.02 1.94 16 41 H 0.00 -0.11 7.49 -2.39 -0.02 -0.13 16 42 H 0.02 1.05 7.26 -2.39 -0.02 1.04 16 43 H 0.03 1.43 6.45 -2.39 -0.02 1.42 16 44 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 45 H 0.06 2.73 7.00 -2.39 -0.02 2.71 16 46 H 0.06 2.52 7.51 -2.38 -0.02 2.50 16 Total: -1.00 -79.62 369.87 3.45 -76.17 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: 1.01 Total: 6.48 kcal Atomic # 6 Polarization: 36.85 SS G_CDS: 9.87 Total: 46.72 kcal Atomic # 7 Polarization: -145.45 SS G_CDS: -9.40 Total: -154.84 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.06 Total: -21.59 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -79.62 3.45 -76.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027647771.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.678 kcal (2) G-P(sol) polarization free energy of solvation -79.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds