Wall clock time and date at job start Wed Apr 1 2020 02:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40179 * 119.82038 * 2 1 4 4 C 1.35680 * 119.27102 * 180.02562 * 3 2 1 5 5 C 1.50692 * 120.48628 * 179.97438 * 4 3 2 6 6 N 1.36174 * 119.02868 * 0.02562 * 4 3 2 7 7 N 1.40099 * 133.22310 * 179.97438 * 6 4 3 8 8 C 1.31990 * 106.92282 * 180.02562 * 7 6 4 9 9 C 1.48130 * 125.32570 * 179.97438 * 8 7 6 10 10 O 1.21521 * 119.99613 * 359.97438 * 9 8 7 11 11 N 1.34770 * 120.00008 * 179.97438 * 9 8 7 12 12 C 1.46503 * 119.99651 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47114 * 174.81137 * 12 11 9 14 14 H 1.08994 * 110.00212 * 57.07746 * 13 12 11 15 15 C 1.54335 * 109.87803 * 295.98613 * 13 12 11 16 16 C 1.55153 * 102.94194 * 218.38817 * 15 13 12 17 17 C 1.54910 * 101.58124 * 35.50106 * 16 15 13 18 18 N 1.47014 * 109.88529 * 178.18215 * 13 12 11 19 19 C 1.36941 * 125.64744 * 298.30652 * 18 13 12 20 20 H 1.08005 * 119.99686 * 345.39102 * 19 18 13 21 21 C 1.38808 * 120.00386 * 165.38394 * 19 18 13 22 22 N 1.31620 * 119.99667 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00255 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46782 * 90.00140 * 23 21 19 25 25 H 1.48499 * 109.46884 * 209.99830 * 23 21 19 26 26 H 1.48495 * 109.46743 * 330.00182 * 23 21 19 27 27 N 1.33468 * 109.35042 * 0.22394 * 8 7 6 28 28 C 1.32496 * 109.75866 * 359.62363 * 27 8 7 29 29 N 1.31260 * 119.82146 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.46937 * 89.99847 * 1 2 3 31 31 H 1.08994 * 109.47004 * 209.99614 * 1 2 3 32 32 H 1.08999 * 109.47238 * 329.99961 * 1 2 3 33 33 H 1.07998 * 120.36394 * 0.04650 * 3 2 1 34 34 H 1.08999 * 109.47591 * 270.02581 * 5 4 3 35 35 H 1.09002 * 109.47198 * 30.02365 * 5 4 3 36 36 H 1.09002 * 109.47673 * 150.02410 * 5 4 3 37 37 H 0.96998 * 120.00479 * 0.02562 * 11 9 8 38 38 H 1.08998 * 109.47132 * 54.80990 * 12 11 9 39 39 H 1.08998 * 109.47123 * 294.80603 * 12 11 9 40 40 H 1.09000 * 110.71819 * 336.75239 * 15 13 12 41 41 H 1.09005 * 110.71638 * 100.02713 * 15 13 12 42 42 H 1.08998 * 111.00596 * 153.57869 * 16 15 13 43 43 H 1.08998 * 111.00503 * 277.43372 * 16 15 13 44 44 H 1.09007 * 110.36506 * 81.82890 * 17 16 15 45 45 H 1.08997 * 110.37126 * 204.04008 * 17 16 15 46 46 H 0.96999 * 119.99917 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2041 1.2162 0.0000 4 6 3.5609 1.2032 -0.0005 5 6 4.3378 2.4944 -0.0011 6 7 4.2102 0.0062 -0.0016 7 7 5.5651 -0.3503 -0.0028 8 6 5.6152 -1.6693 -0.0040 9 6 6.8555 -2.4792 -0.0061 10 8 7.9396 -1.9302 -0.0073 11 7 6.7815 -3.8249 -0.0067 12 6 8.0082 -4.6259 -0.0093 13 6 7.6500 -6.1077 0.1210 14 1 6.9783 -6.4012 -0.6855 15 6 6.9766 -6.3668 1.4854 16 6 7.5575 -7.7433 1.9038 17 6 9.0016 -7.6526 1.3505 18 7 8.8722 -6.9234 0.0757 19 6 9.7454 -6.9950 -0.9767 20 1 9.4543 -6.6189 -1.9464 21 6 11.0047 -7.5507 -0.7974 22 7 11.3593 -8.0094 0.3843 23 14 12.1960 -7.6477 -2.2329 24 1 13.0200 -6.4130 -2.2765 25 1 13.0813 -8.8278 -2.0626 26 1 11.4339 -7.7792 -3.5005 27 7 4.3737 -2.1591 -0.0085 28 6 3.4994 -1.1635 -0.0021 29 7 2.1598 -1.1388 -0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5137 32 1 -0.3634 0.8900 0.5138 33 1 1.6671 2.1532 0.0008 34 1 4.5243 2.8058 -1.0289 35 1 3.7629 3.2646 0.5131 36 1 5.2881 2.3469 0.5120 37 1 5.9162 -4.2631 -0.0061 38 1 8.6377 -4.3291 0.8296 39 1 8.5464 -4.4630 -0.9430 40 1 7.2540 -5.5963 2.2048 41 1 5.8934 -6.4223 1.3764 42 1 7.5607 -7.8527 2.9882 43 1 7.0090 -8.5585 1.4320 44 1 9.6383 -7.0994 2.0410 45 1 9.4057 -8.6503 1.1794 46 1 12.2391 -8.3981 0.5096 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028297480.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:34 Heat of formation + Delta-G solvation = 100.520733 kcal Electronic energy + Delta-G solvation = -29201.208150 eV Core-core repulsion = 25128.210073 eV Total energy + Delta-G solvation = -4072.998077 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.20097 -41.18456 -40.00817 -39.24474 -36.57763 -35.99339 -34.44425 -33.58880 -32.67596 -31.49478 -30.64328 -30.13274 -28.78974 -27.18630 -26.45971 -24.95779 -24.13775 -22.80964 -22.09000 -21.59129 -21.18659 -19.77092 -19.31966 -18.85265 -18.20314 -18.10487 -17.39191 -16.68907 -16.55700 -16.14018 -15.93150 -15.69973 -15.26463 -15.02835 -14.93539 -14.70243 -14.50637 -14.20700 -13.99185 -13.85155 -13.67402 -13.47514 -13.43425 -13.04174 -13.03870 -12.87884 -12.85929 -12.70732 -12.66885 -12.02350 -11.96760 -11.77945 -11.74111 -11.60816 -11.50304 -11.42025 -11.13559 -10.81700 -10.69123 -10.30504 -9.98265 -8.87675 -7.88999 -5.27002 -0.80697 -0.58683 0.49385 0.50759 1.43794 1.46807 1.53436 1.55659 1.83646 2.04435 2.21415 2.47795 2.80815 3.10394 3.15757 3.30452 3.67918 3.75072 3.90886 3.94387 3.99743 4.17647 4.23948 4.27013 4.40494 4.42367 4.50298 4.51172 4.64297 4.69142 4.80988 4.81998 4.87263 4.88837 4.97627 5.05125 5.07656 5.12701 5.19586 5.24051 5.34637 5.45722 5.51071 5.65994 5.77744 6.05992 6.21687 6.28082 6.54896 6.81994 7.08242 7.74344 8.40781 9.21966 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.018976 B = 0.002202 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.171550 B =12709.863528 C =13548.178135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.238 3.762 3 C -0.188 4.188 4 C 0.174 3.826 5 C -0.120 4.120 6 N -0.333 5.333 7 N -0.295 5.295 8 C 0.231 3.769 9 C 0.606 3.394 10 O -0.549 6.549 11 N -0.675 5.675 12 C 0.127 3.873 13 C 0.148 3.852 14 H 0.054 0.946 15 C -0.116 4.116 16 C -0.132 4.132 17 C 0.174 3.826 18 N -0.608 5.608 19 C -0.242 4.242 20 H 0.078 0.922 21 C -0.059 4.059 22 N -0.944 5.944 23 Si 0.973 3.027 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.268 1.268 27 N -0.526 5.526 28 C 0.436 3.564 29 N -0.492 5.492 30 H 0.114 0.886 31 H 0.083 0.917 32 H 0.131 0.869 33 H 0.236 0.764 34 H 0.107 0.893 35 H 0.143 0.857 36 H 0.065 0.935 37 H 0.421 0.579 38 H 0.050 0.950 39 H 0.048 0.952 40 H 0.064 0.936 41 H 0.100 0.900 42 H 0.083 0.917 43 H 0.071 0.929 44 H -0.006 1.006 45 H 0.039 0.961 46 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.286 23.287 1.279 37.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.076 3.924 3 C -0.212 4.212 4 C 0.059 3.941 5 C -0.176 4.176 6 N -0.115 5.115 7 N -0.131 5.131 8 C -0.053 4.053 9 C 0.386 3.614 10 O -0.424 6.424 11 N -0.328 5.328 12 C 0.002 3.998 13 C 0.041 3.959 14 H 0.071 0.929 15 C -0.154 4.154 16 C -0.170 4.170 17 C 0.049 3.951 18 N -0.332 5.332 19 C -0.371 4.371 20 H 0.096 0.904 21 C -0.253 4.253 22 N -0.592 5.592 23 Si 0.801 3.199 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.193 1.193 27 N -0.262 5.262 28 C 0.076 3.924 29 N -0.211 5.211 30 H 0.132 0.868 31 H 0.102 0.898 32 H 0.149 0.851 33 H 0.252 0.748 34 H 0.126 0.874 35 H 0.161 0.839 36 H 0.084 0.916 37 H 0.259 0.741 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.083 0.917 41 H 0.118 0.882 42 H 0.102 0.898 43 H 0.090 0.910 44 H 0.012 0.988 45 H 0.057 0.943 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -27.861 22.632 1.230 35.915 hybrid contribution 1.591 0.100 -0.659 1.725 sum -26.269 22.731 0.571 34.744 Atomic orbital electron populations 1.21163 0.82488 1.06660 1.06081 1.23095 1.00199 0.86299 0.82814 1.22410 0.89844 1.03126 1.05804 1.21903 0.93538 0.86038 0.92592 1.21232 1.00380 0.90070 1.05967 1.49093 1.06125 1.09469 1.46858 1.78706 0.91404 1.12997 1.29954 1.23812 0.92868 0.89872 0.98726 1.16557 0.84578 0.82565 0.77703 1.90829 1.28462 1.72297 1.50851 1.45627 1.11721 1.03950 1.71454 1.21994 0.84917 0.92115 1.00797 1.21323 0.89245 0.87367 0.97969 0.92871 1.22613 1.00598 0.97352 0.94823 1.22873 0.96188 0.97161 1.00817 1.21281 0.92901 0.95375 0.85537 1.44737 1.25040 1.48483 1.14982 1.19322 0.93370 1.35020 0.89369 0.90444 1.25700 0.98664 1.01665 0.99261 1.70140 1.20256 1.45946 1.22870 0.85168 0.78889 0.76701 0.79136 1.21726 1.21721 1.19255 1.70680 0.97485 1.28425 1.29628 1.22836 0.91065 0.81749 0.96744 1.68043 1.00047 1.31472 1.21583 0.86798 0.89837 0.85099 0.74769 0.87442 0.83899 0.91568 0.74094 0.93180 0.93338 0.91713 0.88189 0.89832 0.91001 0.98805 0.94269 0.94245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.02 10.19 71.24 0.73 0.75 16 2 C 0.24 2.27 6.83 43.12 0.29 2.57 16 3 C -0.19 -0.87 9.39 22.15 0.21 -0.66 16 4 C 0.17 2.28 6.86 41.29 0.28 2.56 16 5 C -0.12 -0.79 10.13 71.23 0.72 -0.07 16 6 N -0.33 -8.46 3.91 -185.77 -0.73 -9.19 16 7 N -0.30 -9.90 12.67 -52.60 -0.67 -10.56 16 8 C 0.23 8.26 7.92 137.40 1.09 9.34 16 9 C 0.61 23.73 7.84 86.87 0.68 24.41 16 10 O -0.55 -25.39 17.07 -3.78 -0.06 -25.45 16 11 N -0.68 -24.05 5.32 -465.70 -2.48 -26.53 16 12 C 0.13 5.31 5.07 86.38 0.44 5.75 16 13 C 0.15 6.09 3.23 45.35 0.15 6.23 16 14 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 15 C -0.12 -3.90 6.07 31.79 0.19 -3.71 16 16 C -0.13 -4.82 7.08 31.99 0.23 -4.59 16 17 C 0.17 8.70 5.41 86.86 0.47 9.17 16 18 N -0.61 -31.51 3.13 -668.25 -2.09 -33.59 16 19 C -0.24 -13.79 9.77 84.03 0.82 -12.97 16 20 H 0.08 4.29 7.83 -2.91 -0.02 4.26 16 21 C -0.06 -3.44 5.47 84.86 0.46 -2.98 16 22 N -0.94 -57.92 10.58 21.65 0.23 -57.69 16 23 Si 0.97 47.37 29.55 68.60 2.03 49.40 16 24 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 25 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 26 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 27 N -0.53 -17.50 10.89 -192.62 -2.10 -19.59 16 28 C 0.44 12.33 8.99 261.57 2.35 14.68 16 29 N -0.49 -10.56 10.40 -185.59 -1.93 -12.49 16 30 H 0.11 -0.29 8.14 -2.39 -0.02 -0.31 16 31 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.13 -1.00 8.09 -2.39 -0.02 -1.02 16 33 H 0.24 -1.84 8.06 -2.91 -0.02 -1.87 16 34 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.14 -0.36 8.09 -2.39 -0.02 -0.38 16 36 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.42 12.98 7.99 -92.71 -0.74 12.24 16 38 H 0.05 2.32 8.09 -2.39 -0.02 2.30 16 39 H 0.05 2.25 7.94 -2.39 -0.02 2.23 16 40 H 0.06 2.19 7.82 -2.39 -0.02 2.17 16 41 H 0.10 2.65 8.14 -2.38 -0.02 2.63 16 42 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 43 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 44 H -0.01 -0.34 8.06 -2.38 -0.02 -0.36 16 45 H 0.04 2.19 6.93 -2.39 -0.02 2.17 16 46 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -88.48 387.39 1.59 -86.88 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: 0.28 Total: 8.33 kcal Atomic # 6 Polarization: 41.38 SS G_CDS: 9.11 Total: 50.49 kcal Atomic # 7 Polarization: -159.90 SS G_CDS: -9.76 Total: -169.66 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.06 Total: -25.45 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.40 kcal Total: -88.48 1.59 -86.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028297480.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.404 kcal (2) G-P(sol) polarization free energy of solvation -88.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds