Wall clock time and date at job start Wed Apr 1 2020 02:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40176 * 119.82058 * 2 1 4 4 C 1.35677 * 119.27611 * 180.25369 * 3 2 1 5 5 C 1.50697 * 120.48988 * 179.72308 * 4 3 2 6 6 N 1.36176 * 119.02560 * 359.45638 * 4 3 2 7 7 N 1.40102 * 133.22977 * 180.14071 * 6 4 3 8 8 C 1.31990 * 106.92716 * 180.37251 * 7 6 4 9 9 C 1.48120 * 125.32674 * 180.02562 * 8 7 6 10 10 O 1.21532 * 119.99709 * 352.67264 * 9 8 7 11 11 N 1.34772 * 120.00425 * 172.68221 * 9 8 7 12 12 C 1.46506 * 119.99664 * 3.41364 * 11 9 8 13 13 C 1.46501 * 120.00379 * 183.41818 * 11 9 8 14 14 H 1.08998 * 110.64079 * 1.68589 * 13 11 9 15 15 C 1.55157 * 110.71949 * 125.02067 * 13 11 9 16 16 C 1.54916 * 101.57869 * 153.86482 * 15 13 11 17 17 N 1.47415 * 104.83466 * 322.99163 * 16 15 13 18 18 C 1.36939 * 125.65144 * 204.09662 * 17 16 15 19 19 H 1.08001 * 120.00536 * 180.02562 * 18 17 16 20 20 C 1.38814 * 119.99590 * 0.03316 * 18 17 16 21 21 N 1.31615 * 119.99866 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99710 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47518 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46940 * 120.00753 * 22 20 18 25 25 H 1.48503 * 109.47112 * 239.99965 * 22 20 18 26 26 C 1.47018 * 108.70473 * 24.12581 * 17 16 15 27 27 N 1.33468 * 109.35015 * 359.97438 * 8 7 6 28 28 C 1.32507 * 109.75461 * 0.02562 * 27 8 7 29 29 N 1.31258 * 119.82757 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.46734 * 90.00125 * 1 2 3 31 31 H 1.09000 * 109.46770 * 209.99122 * 1 2 3 32 32 H 1.08996 * 109.47020 * 329.99936 * 1 2 3 33 33 H 1.08004 * 120.36012 * 359.97438 * 3 2 1 34 34 H 1.09009 * 109.46811 * 90.00054 * 5 4 3 35 35 H 1.08999 * 109.47670 * 210.00064 * 5 4 3 36 36 H 1.09000 * 109.46888 * 330.00220 * 5 4 3 37 37 H 1.09003 * 109.46792 * 83.92818 * 12 11 9 38 38 H 1.09007 * 109.47058 * 203.92209 * 12 11 9 39 39 H 1.08994 * 109.47440 * 323.92208 * 12 11 9 40 40 H 1.09000 * 111.00620 * 271.93679 * 15 13 11 41 41 H 1.08997 * 111.00592 * 35.79581 * 15 13 11 42 42 H 1.08998 * 110.36411 * 204.15152 * 16 15 13 43 43 H 1.09004 * 110.45954 * 81.87769 * 16 15 13 44 44 H 0.97003 * 119.99511 * 179.97438 * 21 20 18 45 45 H 1.08998 * 109.88773 * 239.52672 * 26 17 16 46 46 H 1.09004 * 109.88481 * 118.36234 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2041 1.2161 0.0000 4 6 3.5608 1.2033 -0.0052 5 6 4.3377 2.4945 -0.0117 6 7 4.2102 0.0063 0.0009 7 7 5.5651 -0.3503 0.0007 8 6 5.6153 -1.6692 0.0005 9 6 6.8555 -2.4791 0.0007 10 8 7.9350 -1.9373 -0.1331 11 7 6.7867 -3.8169 0.1491 12 6 5.4823 -4.4782 0.2351 13 6 8.0163 -4.6098 0.2245 14 1 8.8933 -3.9644 0.1748 15 6 8.0360 -5.4707 1.5151 16 6 8.9547 -6.6442 1.0921 17 7 8.6177 -6.8970 -0.3205 18 6 8.8008 -8.0802 -0.9853 19 1 8.5205 -8.1645 -2.0249 20 6 9.3464 -9.1712 -0.3229 21 7 9.6873 -9.0686 0.9442 22 14 9.5968 -10.7849 -1.2299 23 1 9.1367 -10.6400 -2.6343 24 1 11.0382 -11.1420 -1.2160 25 1 8.8153 -11.8555 -0.5604 26 6 8.0531 -5.6684 -0.8978 27 7 4.3737 -2.1591 0.0011 28 6 3.4995 -1.1633 0.0012 29 7 2.1599 -1.1387 0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8901 0.5137 32 1 -0.3633 0.8899 0.5138 33 1 1.6670 2.1532 -0.0004 34 1 4.5290 2.8085 1.0146 35 1 5.2856 2.3458 -0.5288 36 1 3.7604 3.2633 -0.5252 37 1 5.0992 -4.6581 -0.7695 38 1 5.5904 -5.4285 0.7582 39 1 4.7867 -3.8404 0.7804 40 1 8.4687 -4.9165 2.3480 41 1 7.0361 -5.8271 1.7624 42 1 8.7449 -7.5269 1.6961 43 1 10.0030 -6.3608 1.1872 44 1 10.0683 -9.8312 1.4072 45 1 7.0432 -5.8593 -1.2605 46 1 8.6833 -5.3196 -1.7159 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033637277.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:51 Heat of formation + Delta-G solvation = 130.997648 kcal Electronic energy + Delta-G solvation = -29709.881040 eV Core-core repulsion = 25638.204542 eV Total energy + Delta-G solvation = -4071.676499 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.21127 -41.47001 -40.07643 -38.99430 -36.70535 -36.34963 -34.20266 -33.48341 -32.63398 -31.17453 -30.23334 -29.41644 -28.77267 -27.98181 -26.95893 -25.72989 -24.15832 -22.86564 -22.16771 -21.91622 -20.48424 -19.56022 -19.22028 -18.96887 -18.36976 -18.08542 -17.49624 -16.73619 -16.53843 -16.03352 -15.89109 -15.57627 -15.26515 -14.87425 -14.70263 -14.59466 -14.46694 -14.37857 -14.06274 -13.91735 -13.73443 -13.49062 -13.43009 -13.15836 -13.04272 -13.00113 -12.87631 -12.73701 -12.66485 -12.43727 -12.21908 -11.98493 -11.87001 -11.67809 -11.46909 -11.26543 -11.06157 -10.79622 -10.76507 -9.99030 -9.83930 -8.93214 -7.78541 -5.24239 -0.80126 -0.58139 0.49588 0.50455 1.42168 1.48174 1.48994 1.59595 1.79381 2.01453 2.20808 2.49263 2.69009 3.06755 3.12580 3.31888 3.64021 3.68702 3.78117 3.86911 3.99621 4.14754 4.17618 4.21680 4.27523 4.40803 4.50944 4.51985 4.53686 4.64285 4.72971 4.80968 4.81762 4.82748 4.88099 4.94666 4.97416 5.06945 5.16955 5.20230 5.33725 5.39758 5.44672 5.56417 5.75641 6.00386 6.21358 6.27561 6.48017 6.71891 7.08512 7.73285 8.37154 9.23722 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.023410 B = 0.002211 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.783143 B =12663.183649 C =13381.320905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.238 3.762 3 C -0.189 4.189 4 C 0.175 3.825 5 C -0.120 4.120 6 N -0.333 5.333 7 N -0.293 5.293 8 C 0.233 3.767 9 C 0.605 3.395 10 O -0.546 6.546 11 N -0.568 5.568 12 C 0.077 3.923 13 C 0.140 3.860 14 H 0.097 0.903 15 C -0.134 4.134 16 C 0.158 3.842 17 N -0.621 5.621 18 C -0.239 4.239 19 H 0.080 0.920 20 C -0.065 4.065 21 N -0.948 5.948 22 Si 0.984 3.016 23 H -0.268 1.268 24 H -0.292 1.292 25 H -0.288 1.288 26 C 0.131 3.869 27 N -0.518 5.518 28 C 0.433 3.567 29 N -0.492 5.492 30 H 0.113 0.887 31 H 0.082 0.918 32 H 0.130 0.870 33 H 0.235 0.765 34 H 0.108 0.892 35 H 0.066 0.934 36 H 0.142 0.858 37 H 0.060 0.940 38 H 0.078 0.922 39 H 0.107 0.893 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.084 0.916 43 H -0.008 1.008 44 H 0.249 0.751 45 H 0.039 0.961 46 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.505 28.234 0.491 37.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.076 3.924 3 C -0.212 4.212 4 C 0.060 3.940 5 C -0.176 4.176 6 N -0.115 5.115 7 N -0.128 5.128 8 C -0.051 4.051 9 C 0.388 3.612 10 O -0.422 6.422 11 N -0.299 5.299 12 C -0.065 4.065 13 C 0.036 3.964 14 H 0.115 0.885 15 C -0.173 4.173 16 C 0.032 3.968 17 N -0.348 5.348 18 C -0.368 4.368 19 H 0.098 0.902 20 C -0.257 4.257 21 N -0.597 5.597 22 Si 0.812 3.188 23 H -0.193 1.193 24 H -0.219 1.219 25 H -0.214 1.214 26 C 0.005 3.995 27 N -0.255 5.255 28 C 0.074 3.926 29 N -0.212 5.212 30 H 0.131 0.869 31 H 0.101 0.899 32 H 0.149 0.851 33 H 0.251 0.749 34 H 0.126 0.874 35 H 0.085 0.915 36 H 0.160 0.840 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.125 0.875 40 H 0.102 0.898 41 H 0.099 0.901 42 H 0.102 0.898 43 H 0.010 0.990 44 H 0.059 0.941 45 H 0.057 0.943 46 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -23.455 27.412 0.433 36.079 hybrid contribution 1.121 -0.601 -0.473 1.357 sum -22.334 26.811 -0.040 34.895 Atomic orbital electron populations 1.21157 0.82623 1.06601 1.06037 1.23070 1.00149 0.86348 0.82876 1.22398 0.89915 1.03072 1.05855 1.21898 0.93499 0.86095 0.92529 1.21231 1.00375 0.90017 1.05987 1.49120 1.06155 1.09446 1.46749 1.78695 0.91351 1.12746 1.30036 1.23705 0.92829 0.89799 0.98729 1.16578 0.84811 0.81963 0.77815 1.90797 1.28589 1.71875 1.50942 1.47625 1.09097 1.04537 1.68625 1.22308 0.81997 0.98934 1.03211 1.22068 0.86244 0.91517 0.96541 0.88461 1.23251 1.01522 0.96571 0.95937 1.21733 0.93314 0.96073 0.85637 1.44689 1.73330 1.07771 1.08964 1.19460 1.34753 0.87759 0.94778 0.90194 1.25646 1.01237 1.01583 0.97253 1.70019 1.49198 1.30376 1.10130 0.84936 0.76908 0.79073 0.77924 1.19288 1.21947 1.21440 1.21561 0.97023 0.86545 0.94366 1.71048 0.97544 1.27105 1.29764 1.23083 0.91124 0.81877 0.96544 1.68038 1.00198 1.31452 1.21510 0.86858 0.89908 0.85144 0.74861 0.87363 0.91514 0.84016 0.92119 0.90363 0.87504 0.89776 0.90081 0.89773 0.98971 0.94112 0.94344 0.96194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.01 10.19 71.24 0.73 0.72 16 2 C 0.24 2.26 6.83 43.12 0.29 2.55 16 3 C -0.19 -0.84 9.39 22.15 0.21 -0.63 16 4 C 0.17 2.19 6.86 41.29 0.28 2.48 16 5 C -0.12 -0.71 10.13 71.24 0.72 0.01 16 6 N -0.33 -8.22 3.91 -185.77 -0.73 -8.95 16 7 N -0.29 -9.53 12.68 -52.61 -0.67 -10.20 16 8 C 0.23 8.17 7.63 137.39 1.05 9.22 16 9 C 0.61 23.35 7.69 86.87 0.67 24.02 16 10 O -0.55 -23.90 16.45 -3.82 -0.06 -23.96 16 11 N -0.57 -20.86 2.88 -819.02 -2.36 -23.22 16 12 C 0.08 2.48 8.30 127.77 1.06 3.54 16 13 C 0.14 5.68 3.36 46.18 0.15 5.83 16 14 H 0.10 4.16 7.00 -2.39 -0.02 4.15 16 15 C -0.13 -5.39 6.59 31.99 0.21 -5.18 16 16 C 0.16 8.08 5.89 86.86 0.51 8.59 16 17 N -0.62 -33.55 3.39 -691.99 -2.35 -35.90 16 18 C -0.24 -13.82 10.27 84.03 0.86 -12.95 16 19 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16 20 C -0.06 -3.73 5.49 84.86 0.47 -3.27 16 21 N -0.95 -57.16 10.09 21.65 0.22 -56.94 16 22 Si 0.98 46.60 29.55 68.60 2.03 48.63 16 23 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 24 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 25 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 26 C 0.13 6.02 6.88 86.73 0.60 6.62 16 27 N -0.52 -16.91 7.66 -192.63 -1.48 -18.39 16 28 C 0.43 11.99 8.98 261.57 2.35 14.34 16 29 N -0.49 -10.48 10.40 -185.59 -1.93 -12.41 16 30 H 0.11 -0.25 8.14 -2.39 -0.02 -0.27 16 31 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 32 H 0.13 -0.96 8.09 -2.39 -0.02 -0.98 16 33 H 0.23 -1.85 8.06 -2.91 -0.02 -1.87 16 34 H 0.11 0.44 8.14 -2.38 -0.02 0.42 16 35 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.14 -0.41 8.09 -2.39 -0.02 -0.43 16 37 H 0.06 1.94 8.10 -2.39 -0.02 1.92 16 38 H 0.08 2.50 6.14 -2.38 -0.01 2.49 16 39 H 0.11 3.36 5.34 -2.39 -0.01 3.35 16 40 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 41 H 0.08 3.09 6.15 -2.39 -0.01 3.07 16 42 H 0.08 4.79 5.87 -2.39 -0.01 4.78 16 43 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 44 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 45 H 0.04 1.71 7.08 -2.39 -0.02 1.69 16 46 H 0.02 0.94 8.14 -2.38 -0.02 0.93 16 Total: -1.00 -85.53 375.84 3.86 -81.67 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: 1.02 Total: 3.75 kcal Atomic # 6 Polarization: 45.74 SS G_CDS: 10.16 Total: 55.91 kcal Atomic # 7 Polarization: -156.71 SS G_CDS: -9.29 Total: -166.00 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.06 Total: -23.96 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -85.53 3.86 -81.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033637277.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.668 kcal (2) G-P(sol) polarization free energy of solvation -85.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds