Wall clock time and date at job start Wed Apr 1 2020 02:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35686 * 120.48773 * 2 1 4 4 C 1.40168 * 119.27028 * 180.02562 * 3 2 1 5 5 N 1.31258 * 120.36208 * 0.02562 * 4 3 2 6 6 C 1.33989 * 120.87412 * 0.02562 * 5 4 3 7 7 N 1.32507 * 132.34202 * 180.31518 * 6 5 4 8 8 C 1.33460 * 109.75358 * 180.14577 * 7 6 5 9 9 C 1.48125 * 125.32225 * 179.81786 * 8 7 6 10 10 O 1.21522 * 120.00564 * 172.19808 * 9 8 7 11 11 N 1.34779 * 120.00262 * 352.19479 * 9 8 7 12 12 C 1.46932 * 120.62838 * 353.95296 * 11 9 8 13 13 C 1.53184 * 108.77801 * 126.36380 * 12 11 9 14 14 C 1.53047 * 109.31406 * 54.63547 * 13 12 11 15 15 H 1.08998 * 109.45141 * 178.61983 * 14 13 12 16 16 N 1.46497 * 109.45822 * 58.65286 * 14 13 12 17 17 C 1.36933 * 120.00148 * 84.93727 * 16 14 13 18 18 H 1.07999 * 119.99604 * 359.97438 * 17 16 14 19 19 C 1.38813 * 120.00262 * 179.72224 * 17 16 14 20 20 N 1.31614 * 119.99517 * 0.27562 * 19 17 16 21 21 Si 1.86801 * 119.99855 * 180.27284 * 19 17 16 22 22 H 1.48502 * 109.46744 * 90.00197 * 21 19 17 23 23 H 1.48497 * 109.46770 * 210.00112 * 21 19 17 24 24 H 1.48495 * 109.47438 * 329.99923 * 21 19 17 25 25 C 1.53039 * 109.53453 * 298.63285 * 14 13 12 26 26 H 1.08998 * 109.49779 * 301.41383 * 25 14 13 27 27 C 1.53007 * 109.49627 * 181.34549 * 25 14 13 28 28 C 1.46926 * 120.63457 * 173.92160 * 11 9 8 29 29 N 1.31987 * 109.35690 * 359.55535 * 8 7 6 30 30 N 1.36166 * 120.48534 * 180.02562 * 2 1 3 31 31 H 1.09010 * 109.46915 * 269.97499 * 1 2 3 32 32 H 1.09008 * 109.47366 * 29.96778 * 1 2 3 33 33 H 1.08993 * 109.47568 * 149.97489 * 1 2 3 34 34 H 1.07999 * 120.36004 * 0.05366 * 3 2 1 35 35 H 1.08004 * 119.81504 * 179.97438 * 4 3 2 36 36 H 1.09005 * 109.58235 * 246.15459 * 12 11 9 37 37 H 1.09003 * 109.58352 * 6.57303 * 12 11 9 38 38 H 1.09000 * 109.50283 * 294.68370 * 13 12 11 39 39 H 1.09004 * 109.50232 * 174.58313 * 13 12 11 40 40 H 0.97006 * 120.00099 * 264.93054 * 16 14 13 41 41 H 0.97009 * 119.99552 * 180.02562 * 20 19 17 42 42 H 1.09002 * 109.46872 * 60.00269 * 27 25 14 43 43 H 1.08999 * 109.46950 * 179.97438 * 27 25 14 44 44 H 1.08993 * 109.47008 * 300.00300 * 27 25 14 45 45 H 1.08996 * 109.58658 * 113.84875 * 28 11 9 46 46 H 1.08995 * 109.58583 * 353.42284 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.1693 0.0000 4 6 3.5968 1.1395 -0.0005 5 7 4.2360 -0.0069 -0.0016 6 6 3.5664 -1.1675 -0.0026 7 7 3.9688 -2.4300 0.0017 8 6 2.9090 -3.2412 -0.0051 9 6 2.9635 -4.7214 -0.0069 10 8 1.9432 -5.3673 0.1296 11 7 4.1447 -5.3522 -0.1601 12 6 5.3662 -4.5918 -0.4580 13 6 6.4373 -4.9549 0.5752 14 6 6.6304 -6.4730 0.5921 15 1 7.4095 -6.7319 1.3091 16 7 7.0244 -6.9297 -0.7429 17 6 8.3413 -6.8968 -1.1169 18 1 9.0894 -6.5338 -0.4277 19 6 8.7154 -7.3350 -2.3798 20 7 7.8036 -7.7769 -3.2198 21 14 10.5128 -7.2972 -2.8870 22 1 11.1573 -8.5842 -2.5217 23 1 10.6087 -7.0947 -4.3550 24 1 11.2013 -6.1827 -2.1877 25 6 5.3194 -7.1511 0.9967 26 1 5.0128 -6.7930 1.9794 27 6 5.5225 -8.6669 1.0458 28 6 4.2356 -6.8130 -0.0318 29 7 1.8047 -2.5183 -0.0042 30 7 2.1978 -1.1734 -0.0005 31 1 -0.3633 -0.0004 1.0278 32 1 -0.3634 0.8903 -0.5134 33 1 -0.3634 -0.8897 -0.5142 34 1 1.6693 2.1124 0.0009 35 1 4.1535 2.0649 -0.0010 36 1 5.7207 -4.8465 -1.4568 37 1 5.1540 -3.5240 -0.4046 38 1 6.1202 -4.6175 1.5620 39 1 7.3776 -4.4716 0.3098 40 1 6.3524 -7.2555 -1.3621 41 1 8.0651 -8.0834 -4.1023 42 1 6.2956 -8.9063 1.7760 43 1 4.5887 -9.1494 1.3345 44 1 5.8280 -9.0245 0.0626 45 1 4.4979 -7.2488 -0.9958 46 1 3.2775 -7.2107 0.3028 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036291297.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:01 Heat of formation + Delta-G solvation = 135.711890 kcal Electronic energy + Delta-G solvation = -30546.096200 eV Core-core repulsion = 26474.624127 eV Total energy + Delta-G solvation = -4071.472074 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.28127 -40.17614 -38.95620 -37.59071 -35.68246 -34.29742 -32.90285 -32.02357 -31.28509 -31.27305 -29.06886 -29.00315 -27.07459 -25.40372 -24.56100 -24.14782 -23.37741 -22.04779 -21.53613 -20.03876 -18.98500 -18.39409 -17.95761 -17.26752 -17.10439 -16.83980 -16.00596 -15.65234 -15.12775 -14.66808 -14.54253 -14.29313 -14.13649 -14.00454 -13.75151 -13.52404 -13.36489 -13.14254 -13.03720 -12.95475 -12.68358 -12.45924 -12.11840 -11.85987 -11.54771 -11.31426 -11.13002 -10.88432 -10.72091 -10.66887 -10.42294 -10.40903 -10.23313 -10.12285 -10.08561 -9.75730 -9.50125 -9.39243 -9.10679 -8.77444 -8.21242 -6.88245 -5.71322 -2.98853 -0.06055 0.26057 1.36750 1.60018 2.69242 2.87433 3.03030 3.34099 3.47208 3.52936 3.54117 3.60959 3.79222 4.19513 4.34815 4.60561 4.64615 4.73290 4.78711 4.81592 5.17546 5.27709 5.39395 5.45459 5.49129 5.54191 5.63707 5.72894 5.76192 5.80775 5.92786 5.99472 6.08382 6.16271 6.23100 6.35445 6.51237 6.57353 6.63464 6.78891 6.86770 6.89794 7.02620 7.08571 7.16790 7.40327 7.67446 7.76598 8.18814 8.47430 9.58845 10.16404 10.51544 11.51374 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.014142 B = 0.003021 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.489865 B = 9267.045287 C =10515.885404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.204 3.796 3 C -0.229 4.229 4 C 0.211 3.789 5 N -0.452 5.452 6 C 0.442 3.558 7 N -0.486 5.486 8 C 0.255 3.745 9 C 0.601 3.399 10 O -0.524 6.524 11 N -0.568 5.568 12 C 0.068 3.932 13 C -0.141 4.141 14 C 0.176 3.824 15 H 0.050 0.950 16 N -0.718 5.718 17 C -0.232 4.232 18 H 0.069 0.931 19 C -0.014 4.014 20 N -0.934 5.934 21 Si 0.904 3.096 22 H -0.292 1.292 23 H -0.293 1.293 24 H -0.283 1.283 25 C -0.108 4.108 26 H 0.066 0.934 27 C -0.136 4.136 28 C 0.119 3.881 29 N -0.271 5.271 30 N -0.328 5.328 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.175 0.825 35 H 0.193 0.807 36 H 0.080 0.920 37 H 0.140 0.860 38 H 0.046 0.954 39 H 0.074 0.926 40 H 0.383 0.617 41 H 0.254 0.746 42 H 0.054 0.946 43 H 0.043 0.957 44 H 0.071 0.929 45 H 0.082 0.918 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.672 20.161 8.593 26.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.086 3.914 3 C -0.254 4.254 4 C 0.025 3.975 5 N -0.166 5.166 6 C 0.083 3.917 7 N -0.220 5.220 8 C -0.029 4.029 9 C 0.382 3.618 10 O -0.398 6.398 11 N -0.299 5.299 12 C -0.054 4.054 13 C -0.182 4.182 14 C 0.066 3.934 15 H 0.068 0.932 16 N -0.361 5.361 17 C -0.364 4.364 18 H 0.087 0.913 19 C -0.210 4.210 20 N -0.582 5.582 21 Si 0.735 3.265 22 H -0.219 1.219 23 H -0.220 1.220 24 H -0.208 1.208 25 C -0.128 4.128 26 H 0.085 0.915 27 C -0.194 4.194 28 C -0.003 4.003 29 N -0.104 5.104 30 N -0.109 5.109 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.110 0.890 34 H 0.192 0.808 35 H 0.210 0.790 36 H 0.098 0.902 37 H 0.156 0.844 38 H 0.065 0.935 39 H 0.092 0.908 40 H 0.218 0.782 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.062 0.938 44 H 0.090 0.910 45 H 0.101 0.899 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.442 18.927 8.640 25.327 hybrid contribution 0.230 0.356 -0.624 0.754 sum -14.212 19.284 8.017 25.261 Atomic orbital electron populations 1.21098 0.86215 1.05731 1.05070 1.20967 0.96796 0.81959 0.91677 1.21837 0.95779 0.97888 1.09924 1.23654 0.91736 0.95866 0.86209 1.68119 1.36125 0.95024 1.17379 1.23169 0.78285 0.93999 0.96239 1.70824 1.26631 0.95986 1.28606 1.24366 0.85676 0.96886 0.95963 1.16407 0.84481 0.81854 0.79008 1.90806 1.33556 1.64673 1.50769 1.47977 1.07621 1.08328 1.65951 1.23006 0.82668 0.99626 1.00074 1.22411 0.98537 0.99960 0.97256 1.20276 0.92886 0.90933 0.89338 0.93180 1.42463 1.06310 1.76202 1.11107 1.19224 0.84704 1.35027 0.97417 0.91258 1.24693 0.97252 1.02164 0.96849 1.69653 1.31652 1.49324 1.07610 0.86234 0.85194 0.77549 0.77489 1.21931 1.21975 1.20835 1.21718 0.96249 0.96911 0.97929 0.91540 1.21664 1.00273 0.94076 1.03425 1.21816 0.99861 0.77875 1.00714 1.78882 1.19279 0.82807 1.29461 1.49087 1.09172 1.06365 1.46288 0.88433 0.88292 0.88975 0.80775 0.79026 0.90219 0.84389 0.93531 0.90781 0.78179 0.93636 0.92716 0.93757 0.90959 0.89949 0.89603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.57 10.13 36.00 0.36 -0.20 16 2 C 0.20 1.56 6.86 -81.58 -0.56 1.00 16 3 C -0.23 -0.98 9.72 -39.77 -0.39 -1.37 16 4 C 0.21 1.25 11.27 -17.07 -0.19 1.05 16 5 N -0.45 -5.27 10.48 -13.79 -0.14 -5.41 16 6 C 0.44 6.41 8.99 -323.04 -2.90 3.51 16 7 N -0.49 -8.27 7.56 -12.24 -0.09 -8.36 16 8 C 0.25 4.48 7.67 -156.80 -1.20 3.27 16 9 C 0.60 11.37 7.71 -12.20 -0.09 11.28 16 10 O -0.52 -10.78 16.52 5.35 0.09 -10.69 16 11 N -0.57 -10.52 2.97 -173.77 -0.52 -11.04 16 12 C 0.07 1.29 6.06 -3.71 -0.02 1.26 16 13 C -0.14 -2.64 5.78 -26.61 -0.15 -2.79 16 14 C 0.18 3.49 2.53 -67.89 -0.17 3.32 16 15 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 16 N -0.72 -17.25 3.64 -53.39 -0.19 -17.44 16 17 C -0.23 -6.27 9.93 -15.06 -0.15 -6.42 16 18 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 19 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 20 N -0.93 -27.85 13.06 55.49 0.72 -27.13 16 21 Si 0.90 22.41 29.55 -169.99 -5.02 17.39 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 C -0.11 -1.87 2.67 -90.49 -0.24 -2.11 16 26 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 27 C -0.14 -2.26 9.06 37.16 0.34 -1.93 16 28 C 0.12 2.14 5.40 -3.71 -0.02 2.12 16 29 N -0.27 -4.36 12.68 32.02 0.41 -3.95 16 30 N -0.33 -4.21 3.91 -10.07 -0.04 -4.25 16 31 H 0.10 0.35 8.14 -51.92 -0.42 -0.07 16 32 H 0.10 0.13 8.09 -51.92 -0.42 -0.29 16 33 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.17 -0.05 8.06 -52.49 -0.42 -0.47 16 35 H 0.19 0.24 8.06 -52.48 -0.42 -0.18 16 36 H 0.08 1.73 7.74 -51.93 -0.40 1.33 16 37 H 0.14 2.58 3.67 -79.37 -0.29 2.29 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 40 H 0.38 9.81 5.93 -40.82 -0.24 9.57 16 41 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.07 1.38 7.54 -51.93 -0.39 0.99 16 45 H 0.08 1.61 6.64 -51.93 -0.34 1.27 16 46 H 0.09 1.49 7.04 -51.93 -0.37 1.13 16 LS Contribution 374.92 15.07 5.65 5.65 Total: -1.00 -35.56 374.92 -10.86 -46.43 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -6.23 Total: 7.31 kcal Atomic # 6 Polarization: 17.00 SS G_CDS: -5.49 Total: 11.51 kcal Atomic # 7 Polarization: -77.73 SS G_CDS: 0.14 Total: -77.59 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.09 Total: -10.69 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.56 -10.86 -46.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036291297.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.137 kcal (2) G-P(sol) polarization free energy of solvation -35.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds