Wall clock time and date at job start Wed Apr 1 2020 02:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35686 * 120.48773 * 2 1 4 4 C 1.40168 * 119.27028 * 180.02562 * 3 2 1 5 5 N 1.31258 * 120.36208 * 0.02562 * 4 3 2 6 6 C 1.33989 * 120.87412 * 0.02562 * 5 4 3 7 7 N 1.32507 * 132.34202 * 180.31518 * 6 5 4 8 8 C 1.33460 * 109.75358 * 180.14577 * 7 6 5 9 9 C 1.48125 * 125.32225 * 179.81786 * 8 7 6 10 10 O 1.21522 * 120.00564 * 172.19808 * 9 8 7 11 11 N 1.34779 * 120.00262 * 352.19479 * 9 8 7 12 12 C 1.46932 * 120.62838 * 353.95296 * 11 9 8 13 13 C 1.53184 * 108.77801 * 126.36380 * 12 11 9 14 14 C 1.53047 * 109.31406 * 54.63547 * 13 12 11 15 15 H 1.08998 * 109.45141 * 178.61983 * 14 13 12 16 16 N 1.46497 * 109.45822 * 58.65286 * 14 13 12 17 17 C 1.36933 * 120.00148 * 84.93727 * 16 14 13 18 18 H 1.07999 * 119.99604 * 359.97438 * 17 16 14 19 19 C 1.38813 * 120.00262 * 179.72224 * 17 16 14 20 20 N 1.31614 * 119.99517 * 0.27562 * 19 17 16 21 21 Si 1.86801 * 119.99855 * 180.27284 * 19 17 16 22 22 H 1.48502 * 109.46744 * 90.00197 * 21 19 17 23 23 H 1.48497 * 109.46770 * 210.00112 * 21 19 17 24 24 H 1.48495 * 109.47438 * 329.99923 * 21 19 17 25 25 C 1.53039 * 109.53453 * 298.63285 * 14 13 12 26 26 H 1.08998 * 109.49779 * 301.41383 * 25 14 13 27 27 C 1.53007 * 109.49627 * 181.34549 * 25 14 13 28 28 C 1.46926 * 120.63457 * 173.92160 * 11 9 8 29 29 N 1.31987 * 109.35690 * 359.55535 * 8 7 6 30 30 N 1.36166 * 120.48534 * 180.02562 * 2 1 3 31 31 H 1.09010 * 109.46915 * 269.97499 * 1 2 3 32 32 H 1.09008 * 109.47366 * 29.96778 * 1 2 3 33 33 H 1.08993 * 109.47568 * 149.97489 * 1 2 3 34 34 H 1.07999 * 120.36004 * 0.05366 * 3 2 1 35 35 H 1.08004 * 119.81504 * 179.97438 * 4 3 2 36 36 H 1.09005 * 109.58235 * 246.15459 * 12 11 9 37 37 H 1.09003 * 109.58352 * 6.57303 * 12 11 9 38 38 H 1.09000 * 109.50283 * 294.68370 * 13 12 11 39 39 H 1.09004 * 109.50232 * 174.58313 * 13 12 11 40 40 H 0.97006 * 120.00099 * 264.93054 * 16 14 13 41 41 H 0.97009 * 119.99552 * 180.02562 * 20 19 17 42 42 H 1.09002 * 109.46872 * 60.00269 * 27 25 14 43 43 H 1.08999 * 109.46950 * 179.97438 * 27 25 14 44 44 H 1.08993 * 109.47008 * 300.00300 * 27 25 14 45 45 H 1.08996 * 109.58658 * 113.84875 * 28 11 9 46 46 H 1.08995 * 109.58583 * 353.42284 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.1693 0.0000 4 6 3.5968 1.1395 -0.0005 5 7 4.2360 -0.0069 -0.0016 6 6 3.5664 -1.1675 -0.0026 7 7 3.9688 -2.4300 0.0017 8 6 2.9090 -3.2412 -0.0051 9 6 2.9635 -4.7214 -0.0069 10 8 1.9432 -5.3673 0.1296 11 7 4.1447 -5.3522 -0.1601 12 6 5.3662 -4.5918 -0.4580 13 6 6.4373 -4.9549 0.5752 14 6 6.6304 -6.4730 0.5921 15 1 7.4095 -6.7319 1.3091 16 7 7.0244 -6.9297 -0.7429 17 6 8.3413 -6.8968 -1.1169 18 1 9.0894 -6.5338 -0.4277 19 6 8.7154 -7.3350 -2.3798 20 7 7.8036 -7.7769 -3.2198 21 14 10.5128 -7.2972 -2.8870 22 1 11.1573 -8.5842 -2.5217 23 1 10.6087 -7.0947 -4.3550 24 1 11.2013 -6.1827 -2.1877 25 6 5.3194 -7.1511 0.9967 26 1 5.0128 -6.7930 1.9794 27 6 5.5225 -8.6669 1.0458 28 6 4.2356 -6.8130 -0.0318 29 7 1.8047 -2.5183 -0.0042 30 7 2.1978 -1.1734 -0.0005 31 1 -0.3633 -0.0004 1.0278 32 1 -0.3634 0.8903 -0.5134 33 1 -0.3634 -0.8897 -0.5142 34 1 1.6693 2.1124 0.0009 35 1 4.1535 2.0649 -0.0010 36 1 5.7207 -4.8465 -1.4568 37 1 5.1540 -3.5240 -0.4046 38 1 6.1202 -4.6175 1.5620 39 1 7.3776 -4.4716 0.3098 40 1 6.3524 -7.2555 -1.3621 41 1 8.0651 -8.0834 -4.1023 42 1 6.2956 -8.9063 1.7760 43 1 4.5887 -9.1494 1.3345 44 1 5.8280 -9.0245 0.0626 45 1 4.4979 -7.2488 -0.9958 46 1 3.2775 -7.2107 0.3028 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036291297.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:00 Heat of formation + Delta-G solvation = 113.885468 kcal Electronic energy + Delta-G solvation = -30547.042665 eV Core-core repulsion = 26474.624127 eV Total energy + Delta-G solvation = -4072.418538 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.21602 -41.53105 -39.93369 -39.10599 -36.45190 -35.94350 -34.56295 -33.12714 -32.80274 -32.25987 -30.94108 -29.51317 -28.38987 -26.96372 -25.62171 -25.28581 -25.10793 -23.11574 -22.91886 -21.29314 -20.05434 -19.64953 -19.29104 -18.94824 -18.20404 -17.97045 -17.18879 -16.71790 -16.51633 -16.26984 -15.93972 -15.63637 -15.21550 -15.10695 -14.99140 -14.74156 -14.49569 -14.30188 -14.24039 -13.91294 -13.85235 -13.55201 -13.34433 -13.00902 -12.96693 -12.85739 -12.71687 -12.62598 -12.44913 -12.19835 -12.10475 -11.94989 -11.70375 -11.59713 -11.20131 -11.14553 -11.00378 -10.97879 -10.53255 -9.94572 -9.75939 -8.90926 -7.87227 -5.13409 -0.77296 -0.52377 0.50844 0.52134 1.49475 1.50257 1.51077 1.58461 1.84071 2.10884 2.28927 2.60861 2.71219 3.14483 3.24562 3.46455 3.74474 3.83589 3.87489 4.07465 4.09663 4.10597 4.26992 4.29067 4.39637 4.45838 4.48031 4.49024 4.55919 4.60270 4.63478 4.76420 4.89352 4.95549 5.01118 5.10874 5.13076 5.14004 5.21558 5.25929 5.28357 5.44637 5.49609 5.60096 5.65614 6.07253 6.26173 6.34469 6.49222 6.76713 7.41585 8.17471 8.41856 9.36305 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.014142 B = 0.003021 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.489865 B = 9267.045287 C =10515.885404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.169 3.831 3 C -0.187 4.187 4 C 0.223 3.777 5 N -0.491 5.491 6 C 0.428 3.572 7 N -0.522 5.522 8 C 0.233 3.767 9 C 0.603 3.397 10 O -0.548 6.548 11 N -0.569 5.569 12 C 0.078 3.922 13 C -0.131 4.131 14 C 0.172 3.828 15 H 0.052 0.948 16 N -0.724 5.724 17 C -0.225 4.225 18 H 0.075 0.925 19 C -0.076 4.076 20 N -0.970 5.970 21 Si 0.966 3.034 22 H -0.290 1.290 23 H -0.301 1.301 24 H -0.271 1.271 25 C -0.098 4.098 26 H 0.087 0.913 27 C -0.129 4.129 28 C 0.122 3.878 29 N -0.291 5.291 30 N -0.328 5.328 31 H 0.107 0.893 32 H 0.141 0.859 33 H 0.064 0.936 34 H 0.237 0.763 35 H 0.246 0.754 36 H 0.044 0.956 37 H 0.150 0.850 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.373 0.627 41 H 0.247 0.753 42 H 0.062 0.938 43 H 0.068 0.932 44 H 0.041 0.959 45 H 0.060 0.940 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.378 24.243 10.198 30.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.053 3.947 3 C -0.210 4.210 4 C 0.042 3.958 5 N -0.208 5.208 6 C 0.069 3.931 7 N -0.258 5.258 8 C -0.050 4.050 9 C 0.386 3.614 10 O -0.424 6.424 11 N -0.299 5.299 12 C -0.043 4.043 13 C -0.171 4.171 14 C 0.063 3.937 15 H 0.070 0.930 16 N -0.365 5.365 17 C -0.357 4.357 18 H 0.093 0.907 19 C -0.268 4.268 20 N -0.622 5.622 21 Si 0.796 3.204 22 H -0.218 1.218 23 H -0.229 1.229 24 H -0.196 1.196 25 C -0.118 4.118 26 H 0.106 0.894 27 C -0.187 4.187 28 C 0.000 4.000 29 N -0.127 5.127 30 N -0.109 5.109 31 H 0.126 0.874 32 H 0.159 0.841 33 H 0.083 0.917 34 H 0.254 0.746 35 H 0.262 0.738 36 H 0.062 0.938 37 H 0.166 0.834 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.206 0.794 41 H 0.056 0.944 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.060 0.940 45 H 0.078 0.922 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.160 23.094 10.295 29.482 hybrid contribution 0.324 -0.532 -1.058 1.228 sum -14.836 22.562 9.237 28.539 Atomic orbital electron populations 1.21225 0.84076 1.06439 1.05912 1.21993 0.98654 0.81106 0.92932 1.22635 0.95115 0.98708 1.04544 1.24775 0.93181 0.95663 0.82223 1.68256 1.37054 0.95464 1.20031 1.23212 0.79115 0.94155 0.96606 1.70416 1.27335 0.97560 1.30490 1.23851 0.86616 0.96135 0.98435 1.16585 0.83938 0.82798 0.78106 1.90765 1.34097 1.65663 1.51882 1.47952 1.07533 1.08381 1.66023 1.22859 0.82880 1.00476 0.98133 1.22277 0.97896 0.98854 0.98106 1.20474 0.94238 0.91705 0.87282 0.93043 1.42572 1.05211 1.76171 1.12512 1.19579 0.85980 1.32939 0.97213 0.90715 1.25422 1.00885 1.03220 0.97276 1.69817 1.33366 1.51317 1.07682 0.85238 0.80984 0.77696 0.76462 1.21772 1.22851 1.19562 1.21650 0.94397 0.97327 0.98409 0.89437 1.21590 1.01783 0.93424 1.01902 1.21764 1.00489 0.77833 0.99896 1.78679 1.19320 0.84682 1.29970 1.49100 1.09229 1.06329 1.46274 0.87428 0.84055 0.91696 0.74645 0.73791 0.93792 0.83441 0.91569 0.91932 0.79363 0.94420 0.91890 0.91262 0.93980 0.92183 0.88770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.73 10.13 71.24 0.72 -0.01 16 2 C 0.17 2.08 6.86 41.29 0.28 2.36 16 3 C -0.19 -0.55 9.72 22.15 0.22 -0.33 16 4 C 0.22 1.57 11.27 85.25 0.96 2.53 16 5 N -0.49 -10.52 10.48 -197.54 -2.07 -12.59 16 6 C 0.43 12.35 8.99 261.57 2.35 14.70 16 7 N -0.52 -18.44 7.56 -192.62 -1.46 -19.90 16 8 C 0.23 8.60 7.67 137.40 1.05 9.66 16 9 C 0.60 23.97 7.71 86.87 0.67 24.64 16 10 O -0.55 -23.55 16.52 -3.79 -0.06 -23.61 16 11 N -0.57 -22.09 2.97 -821.98 -2.44 -24.54 16 12 C 0.08 3.13 6.06 86.36 0.52 3.66 16 13 C -0.13 -4.99 5.78 30.67 0.18 -4.81 16 14 C 0.17 6.90 2.53 45.02 0.11 7.01 16 15 H 0.05 2.07 8.08 -2.39 -0.02 2.05 16 16 N -0.72 -35.94 3.64 -322.81 -1.18 -37.11 16 17 C -0.22 -12.37 9.93 84.03 0.83 -11.54 16 18 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 19 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 20 N -0.97 -60.09 13.06 21.65 0.28 -59.81 16 21 Si 0.97 47.01 29.55 68.60 2.03 49.04 16 22 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 23 H -0.30 -14.96 7.11 99.48 0.71 -14.25 16 24 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 25 C -0.10 -3.40 2.67 -10.71 -0.03 -3.43 16 26 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 27 C -0.13 -4.25 9.06 71.98 0.65 -3.60 16 28 C 0.12 4.56 5.40 86.36 0.47 5.03 16 29 N -0.29 -9.72 12.68 -52.61 -0.67 -10.39 16 30 N -0.33 -8.26 3.91 -185.76 -0.73 -8.99 16 31 H 0.11 0.45 8.14 -2.38 -0.02 0.43 16 32 H 0.14 -0.38 8.09 -2.38 -0.02 -0.40 16 33 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.24 -2.20 8.06 -2.91 -0.02 -2.23 16 35 H 0.25 -1.04 8.06 -2.91 -0.02 -1.07 16 36 H 0.04 2.05 7.74 -2.38 -0.02 2.03 16 37 H 0.15 5.83 3.67 -56.57 -0.21 5.62 16 38 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 40 H 0.37 20.12 5.93 -92.70 -0.55 19.57 16 41 H 0.25 15.00 8.31 -92.70 -0.77 14.23 16 42 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.04 1.64 7.54 -2.39 -0.02 1.62 16 45 H 0.06 2.51 6.64 -2.39 -0.02 2.50 16 46 H 0.09 3.36 7.04 -2.39 -0.02 3.34 16 Total: -1.00 -84.93 374.92 3.45 -81.48 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: 0.28 Total: 24.47 kcal Atomic # 6 Polarization: 32.49 SS G_CDS: 9.46 Total: 41.95 kcal Atomic # 7 Polarization: -165.07 SS G_CDS: -8.26 Total: -173.33 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.06 Total: -23.61 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.04 kcal Total: -84.93 3.45 -81.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036291297.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.369 kcal (2) G-P(sol) polarization free energy of solvation -84.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds