Wall clock time and date at job start Wed Apr 1 2020 03:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.40174 * 120.36585 * 2 1 4 4 N 1.31252 * 120.35626 * 179.97438 * 3 2 1 5 5 C 1.33986 * 120.88474 * 359.97438 * 4 3 2 6 6 N 1.32502 * 132.34944 * 180.36157 * 5 4 3 7 7 C 1.33467 * 109.75651 * 180.10031 * 6 5 4 8 8 C 1.48122 * 125.32671 * 179.82074 * 7 6 5 9 9 O 1.21517 * 120.00511 * 172.22931 * 8 7 6 10 10 N 1.34782 * 119.99661 * 352.23075 * 8 7 6 11 11 C 1.46921 * 120.63282 * 353.42928 * 10 8 7 12 12 C 1.53188 * 108.77725 * 233.58247 * 11 10 8 13 13 C 1.53038 * 109.31428 * 305.36574 * 12 11 10 14 14 H 1.08994 * 109.44816 * 301.35041 * 13 12 11 15 15 N 1.46504 * 109.46261 * 181.37950 * 13 12 11 16 16 C 1.36936 * 119.99685 * 84.93105 * 15 13 12 17 17 H 1.08009 * 120.00139 * 359.97438 * 16 15 13 18 18 C 1.38813 * 120.00298 * 180.02562 * 16 15 13 19 19 N 1.31613 * 119.99536 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00332 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47316 * 89.99729 * 20 18 16 22 22 H 1.48502 * 109.47227 * 209.99854 * 20 18 16 23 23 H 1.48504 * 109.46893 * 329.99551 * 20 18 16 24 24 C 1.53041 * 109.53852 * 61.36021 * 13 12 11 25 25 C 1.46933 * 120.62775 * 173.40211 * 10 8 7 26 26 H 1.08996 * 109.58571 * 246.20225 * 25 10 8 27 27 C 1.52996 * 109.58707 * 6.63028 * 25 10 8 28 28 N 1.31984 * 109.35185 * 359.56226 * 7 6 5 29 29 N 1.36878 * 120.22104 * 359.97438 * 5 4 3 30 30 C 1.35686 * 120.36167 * 179.97438 * 2 1 3 31 31 H 1.09004 * 109.47230 * 270.02413 * 1 2 3 32 32 H 1.08995 * 109.46736 * 30.02534 * 1 2 3 33 33 H 1.08993 * 109.47029 * 150.02632 * 1 2 3 34 34 H 1.07997 * 119.81746 * 359.95805 * 3 2 1 35 35 H 1.09005 * 109.58290 * 353.37190 * 11 10 8 36 36 H 1.08999 * 109.58792 * 113.79562 * 11 10 8 37 37 H 1.09005 * 109.49514 * 65.31293 * 12 11 10 38 38 H 1.08998 * 109.50230 * 185.41198 * 12 11 10 39 39 H 0.96990 * 120.00464 * 264.93274 * 15 13 12 40 40 H 0.97006 * 119.99944 * 180.02562 * 19 18 16 41 41 H 1.09001 * 109.49822 * 178.68400 * 24 13 12 42 42 H 1.09006 * 109.52287 * 58.60379 * 24 13 12 43 43 H 1.09000 * 109.47096 * 55.83899 * 27 25 10 44 44 H 1.09000 * 109.46931 * 175.84634 * 27 25 10 45 45 H 1.09003 * 109.46971 * 295.84087 * 27 25 10 46 46 H 1.07996 * 120.48700 * 0.04134 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2157 1.2094 0.0000 4 7 3.5282 1.2092 0.0005 5 6 4.2157 0.0592 0.0015 6 7 5.5143 -0.2043 0.0084 7 6 5.7065 -1.5251 0.0039 8 6 7.0258 -2.1986 0.0054 9 8 7.0925 -3.4040 0.1433 10 7 8.1523 -1.4742 -0.1462 11 6 8.0839 -0.0399 -0.4568 12 6 8.9262 0.2348 -1.7065 13 6 10.3455 -0.2937 -1.4865 14 1 10.7823 0.1919 -0.6140 15 7 11.1629 -0.0033 -2.6671 16 6 11.7755 1.2149 -2.7929 17 1 11.6556 1.9619 -2.0220 18 6 12.5496 1.4904 -3.9118 19 7 12.6952 0.5804 -4.8514 20 14 13.3857 3.1519 -4.0831 21 1 14.7370 3.0917 -3.4701 22 1 13.5099 3.4976 -5.5220 23 1 12.5750 4.1875 -3.3935 24 6 10.2988 -1.8062 -1.2582 25 6 9.4721 -2.1040 -0.0034 26 1 9.9780 -1.6977 0.8724 27 6 9.3043 -3.6167 0.1533 28 7 4.5373 -2.1373 0.0036 29 7 3.5542 -1.1390 0.0026 30 6 2.1929 -1.1708 0.0005 31 1 -0.3634 0.0004 1.0277 32 1 -0.3632 0.8897 -0.5142 33 1 -0.3633 -0.8902 -0.5134 34 1 1.6787 2.1465 -0.0007 35 1 7.0484 0.2444 -0.6442 36 1 8.4766 0.5348 0.3821 37 1 8.4795 -0.2684 -2.5641 38 1 8.9624 1.3082 -1.8922 39 1 11.2703 -0.6739 -3.3596 40 1 13.2365 0.7726 -5.6331 41 1 11.3120 -2.1855 -1.1248 42 1 9.8395 -2.2907 -2.1199 43 1 8.7389 -4.0090 -0.6919 44 1 10.2858 -4.0897 0.1850 45 1 8.7687 -3.8289 1.0787 46 1 1.6668 -2.1139 0.0003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044642203.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:55 Heat of formation + Delta-G solvation = 125.054238 kcal Electronic energy + Delta-G solvation = -29989.716786 eV Core-core repulsion = 25917.782562 eV Total energy + Delta-G solvation = -4071.934224 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.20818 -41.73573 -40.03963 -38.82032 -36.32041 -35.88025 -34.56900 -33.78065 -33.42997 -32.12453 -31.10054 -28.74170 -28.19847 -26.48712 -26.06569 -25.15564 -24.51572 -23.86246 -22.77257 -21.63170 -20.63512 -19.56123 -19.20811 -19.09163 -18.04203 -17.95461 -17.16905 -16.76457 -16.68112 -16.49581 -15.59007 -15.52126 -15.41364 -15.15050 -14.88154 -14.73703 -14.58251 -14.30940 -14.02974 -13.85896 -13.61301 -13.56766 -13.31890 -13.12589 -13.05533 -13.02340 -12.84844 -12.68182 -12.63614 -12.17673 -12.08979 -12.05899 -11.76842 -11.41209 -11.26663 -11.11019 -10.85779 -10.76118 -10.52537 -9.89431 -9.75419 -8.99814 -7.92394 -5.21293 -0.78543 -0.57746 0.51444 0.53180 1.48114 1.49883 1.50683 1.58256 1.85175 2.08513 2.23708 2.57305 2.71581 3.10722 3.33301 3.40659 3.70197 3.70985 3.77904 3.91215 4.03671 4.09520 4.15969 4.25848 4.31198 4.41355 4.54100 4.59942 4.63699 4.71312 4.81140 4.83390 4.94080 4.95473 5.00596 5.01954 5.05678 5.09920 5.17641 5.28696 5.39432 5.41830 5.46957 5.53716 5.66553 6.07539 6.20600 6.29115 6.45738 6.82284 7.35007 8.09852 8.34089 9.31287 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.013372 B = 0.002662 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.436774 B =10514.635037 C =12192.394025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.149 4.149 3 C 0.224 3.776 4 N -0.478 5.478 5 C 0.418 3.582 6 N -0.519 5.519 7 C 0.228 3.772 8 C 0.604 3.396 9 O -0.527 6.527 10 N -0.573 5.573 11 C 0.088 3.912 12 C -0.135 4.135 13 C 0.173 3.827 14 H 0.053 0.947 15 N -0.737 5.737 16 C -0.234 4.234 17 H 0.078 0.922 18 C -0.079 4.079 19 N -0.972 5.972 20 Si 0.972 3.028 21 H -0.287 1.287 22 H -0.298 1.298 23 H -0.268 1.268 24 C -0.123 4.123 25 C 0.150 3.850 26 H 0.099 0.901 27 C -0.128 4.128 28 N -0.295 5.295 29 N -0.324 5.324 30 C 0.136 3.864 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.088 0.912 34 H 0.242 0.758 35 H 0.134 0.866 36 H 0.081 0.919 37 H 0.037 0.963 38 H 0.064 0.936 39 H 0.371 0.629 40 H 0.249 0.751 41 H 0.082 0.918 42 H 0.050 0.950 43 H 0.053 0.947 44 H 0.068 0.932 45 H 0.064 0.936 46 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.814 -1.138 14.407 34.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.156 4.156 3 C 0.040 3.960 4 N -0.194 5.194 5 C 0.060 3.940 6 N -0.256 5.256 7 C -0.056 4.056 8 C 0.387 3.613 9 O -0.403 6.403 10 N -0.305 5.305 11 C -0.034 4.034 12 C -0.176 4.176 13 C 0.065 3.935 14 H 0.071 0.929 15 N -0.376 5.376 16 C -0.366 4.366 17 H 0.096 0.904 18 C -0.271 4.271 19 N -0.623 5.623 20 Si 0.802 3.198 21 H -0.214 1.214 22 H -0.225 1.225 23 H -0.193 1.193 24 C -0.162 4.162 25 C 0.048 3.952 26 H 0.117 0.883 27 C -0.186 4.186 28 N -0.131 5.131 29 N -0.104 5.104 30 C 0.002 3.998 31 H 0.118 0.882 32 H 0.124 0.876 33 H 0.107 0.893 34 H 0.258 0.742 35 H 0.151 0.849 36 H 0.099 0.901 37 H 0.056 0.944 38 H 0.082 0.918 39 H 0.202 0.798 40 H 0.058 0.942 41 H 0.101 0.899 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -29.668 -1.518 14.544 33.076 hybrid contribution 0.426 -0.037 -0.954 1.046 sum -29.242 -1.556 13.590 32.283 Atomic orbital electron populations 1.20862 0.83261 1.06170 1.05163 1.21248 1.01380 0.90401 1.02564 1.24684 0.86628 1.01587 0.83124 1.68243 1.11033 1.21210 1.18871 1.23132 0.89534 0.83964 0.97402 1.70675 1.11726 1.13323 1.29835 1.24199 0.95022 0.88132 0.98208 1.16635 0.81125 0.85369 0.78215 1.90870 1.85418 1.13270 1.50711 1.48051 1.04811 1.11080 1.66570 1.22738 1.05119 0.78339 0.97214 1.22433 0.97228 1.01199 0.96715 1.20429 0.89767 0.93569 0.89744 0.92903 1.42638 1.57602 1.15283 1.22036 1.19637 1.21481 0.92524 1.02984 0.90394 1.25571 1.02644 1.01641 0.97267 1.69833 1.45610 1.35673 1.11211 0.85148 0.78538 0.79885 0.76270 1.21389 1.22489 1.19308 1.22161 1.00410 0.96332 0.97278 1.21516 0.80645 0.94876 0.98165 0.88333 1.22113 1.01041 0.92308 1.03099 1.78741 0.95448 1.08553 1.30322 1.49037 1.08267 1.07647 1.45443 1.22938 0.77475 1.04279 0.95142 0.88225 0.87563 0.89293 0.74212 0.84896 0.90072 0.94443 0.91784 0.79798 0.94179 0.89925 0.93069 0.92804 0.91320 0.91665 0.77024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.50 10.03 71.24 0.71 1.21 16 2 C -0.15 -0.59 5.87 -19.98 -0.12 -0.71 16 3 C 0.22 1.59 10.96 85.25 0.93 2.52 16 4 N -0.48 -9.54 10.48 -197.54 -2.07 -11.61 16 5 C 0.42 11.16 8.99 261.57 2.35 13.51 16 6 N -0.52 -16.66 7.63 -192.62 -1.47 -18.13 16 7 C 0.23 7.63 7.63 137.40 1.05 8.68 16 8 C 0.60 21.07 7.62 86.87 0.66 21.73 16 9 O -0.53 -19.69 12.48 -3.77 -0.05 -19.74 16 10 N -0.57 -18.81 2.97 -798.11 -2.37 -21.19 16 11 C 0.09 2.90 6.09 86.36 0.53 3.42 16 12 C -0.13 -5.21 5.66 30.67 0.17 -5.03 16 13 C 0.17 7.10 2.73 45.02 0.12 7.22 16 14 H 0.05 2.14 8.08 -2.39 -0.02 2.12 16 15 N -0.74 -38.26 5.12 -322.81 -1.65 -39.91 16 16 C -0.23 -13.20 9.93 84.03 0.83 -12.37 16 17 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 18 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 19 N -0.97 -60.97 13.06 21.65 0.28 -60.68 16 20 Si 0.97 47.00 29.55 68.60 2.03 49.03 16 21 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 22 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 23 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 24 C -0.12 -4.35 4.84 30.67 0.15 -4.20 16 25 C 0.15 4.59 3.49 44.97 0.16 4.75 16 26 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 27 C -0.13 -3.78 7.59 71.98 0.55 -3.24 16 28 N -0.30 -9.18 12.78 -52.61 -0.67 -9.85 16 29 N -0.32 -7.56 3.91 -197.58 -0.77 -8.33 16 30 C 0.14 1.47 10.97 83.43 0.92 2.38 16 31 H 0.10 -0.68 8.14 -2.38 -0.02 -0.70 16 32 H 0.11 -0.89 8.10 -2.39 -0.02 -0.91 16 33 H 0.09 -0.54 8.09 -2.39 -0.02 -0.56 16 34 H 0.24 -0.87 8.06 -2.91 -0.02 -0.89 16 35 H 0.13 4.53 4.10 -26.18 -0.11 4.43 16 36 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 38 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 39 H 0.37 20.88 7.80 -92.72 -0.72 20.16 16 40 H 0.25 15.19 8.31 -92.70 -0.77 14.42 16 41 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 42 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 43 H 0.05 1.80 6.70 -2.39 -0.02 1.79 16 44 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.06 1.96 6.80 -2.39 -0.02 1.95 16 46 H 0.21 0.84 8.06 -2.91 -0.02 0.81 16 Total: -1.00 -83.45 374.25 2.94 -80.51 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: 0.20 Total: 24.20 kcal Atomic # 6 Polarization: 26.23 SS G_CDS: 9.48 Total: 35.71 kcal Atomic # 7 Polarization: -160.98 SS G_CDS: -8.73 Total: -169.71 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.05 Total: -19.74 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -83.45 2.94 -80.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044642203.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.566 kcal (2) G-P(sol) polarization free energy of solvation -83.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds