Wall clock time and date at job start Wed Apr 1 2020 03:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32459 * 125.18487 * 2 1 4 4 C 1.32872 * 109.80898 * 180.12140 * 3 2 1 5 5 N 1.33730 * 132.44209 * 179.24466 * 4 3 2 6 6 C 1.31207 * 121.19607 * 180.02562 * 5 4 3 7 7 C 1.40097 * 120.45476 * 359.97438 * 6 5 4 8 8 C 1.37001 * 119.05400 * 0.02562 * 7 6 5 9 9 C 1.47710 * 120.63827 * 179.97438 * 8 7 6 10 10 O 1.21568 * 119.99832 * 33.55235 * 9 8 7 11 11 N 1.34777 * 120.00140 * 213.54871 * 9 8 7 12 12 C 1.46922 * 120.62884 * 6.40944 * 11 9 8 13 13 C 1.53199 * 108.76343 * 126.40914 * 12 11 9 14 14 C 1.53040 * 109.31239 * 54.65291 * 13 12 11 15 15 H 1.09000 * 109.46023 * 58.63100 * 14 13 12 16 16 N 1.46508 * 109.45697 * 178.60375 * 14 13 12 17 17 C 1.36929 * 119.99840 * 275.02624 * 16 14 13 18 18 H 1.08008 * 120.00031 * 0.02562 * 17 16 14 19 19 C 1.38813 * 120.00058 * 180.02562 * 17 16 14 20 20 N 1.31616 * 119.99828 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99995 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47262 * 90.00489 * 21 19 17 23 23 H 1.48502 * 109.47657 * 330.00157 * 21 19 17 24 24 H 1.48505 * 109.47480 * 210.00046 * 21 19 17 25 25 C 1.53040 * 109.52876 * 298.61619 * 14 13 12 26 26 C 1.46929 * 120.63097 * 186.43159 * 11 9 8 27 27 H 1.09002 * 109.58723 * 113.79615 * 26 11 9 28 28 C 1.53004 * 109.70283 * 353.44779 * 26 11 9 29 29 N 1.36690 * 107.18061 * 359.49735 * 4 3 2 30 30 N 1.31353 * 125.18683 * 179.35671 * 2 1 3 31 31 H 1.09006 * 109.46766 * 270.64839 * 1 2 3 32 32 H 1.09002 * 109.46917 * 30.64266 * 1 2 3 33 33 H 1.08998 * 109.47407 * 150.65010 * 1 2 3 34 34 H 1.08004 * 119.77342 * 180.02562 * 6 5 4 35 35 H 1.08001 * 120.48017 * 179.97438 * 7 6 5 36 36 H 1.08999 * 109.58688 * 246.19660 * 12 11 9 37 37 H 1.08998 * 109.59043 * 6.48788 * 12 11 9 38 38 H 1.09001 * 109.50394 * 294.69593 * 13 12 11 39 39 H 1.08994 * 109.48957 * 174.59996 * 13 12 11 40 40 H 0.96994 * 120.00014 * 95.02814 * 16 14 13 41 41 H 0.97005 * 120.00156 * 0.02562 * 20 19 17 42 42 H 1.08997 * 109.49987 * 181.32841 * 25 14 13 43 43 H 1.09009 * 109.49688 * 301.42213 * 25 14 13 44 44 H 1.09003 * 109.46764 * 303.69014 * 28 26 11 45 45 H 1.09004 * 109.47444 * 63.68872 * 28 26 11 46 46 H 1.08999 * 109.47029 * 183.69288 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2703 1.0826 0.0000 4 6 3.5514 0.7303 -0.0026 5 7 4.6832 1.4425 -0.0167 6 6 5.8562 0.8545 -0.0166 7 6 5.9499 -0.5432 -0.0011 8 6 4.7995 -1.2870 0.0135 9 6 4.8575 -2.7629 0.0296 10 8 5.7613 -3.3293 0.6128 11 7 3.9085 -3.4816 -0.6024 12 6 2.8909 -2.8162 -1.4273 13 6 2.8923 -3.4533 -2.8206 14 6 2.7014 -4.9657 -2.6857 15 1 1.7624 -5.1687 -2.1708 16 7 2.6689 -5.5742 -4.0181 17 6 1.4948 -5.6203 -4.7212 18 1 0.5928 -5.2076 -4.2938 19 6 1.4639 -6.1972 -5.9834 20 7 2.5630 -6.7005 -6.5040 21 14 -0.1379 -6.2607 -6.9423 22 1 -0.2673 -5.0356 -7.7715 23 1 -1.2791 -6.3403 -5.9953 24 1 -0.1409 -7.4567 -7.8226 25 6 3.8616 -5.5583 -1.8828 26 6 3.8715 -4.9452 -0.4790 27 1 2.9705 -5.2441 0.0567 28 6 5.1061 -5.4299 0.2838 29 7 3.5945 -0.6359 0.0071 30 7 2.2639 -1.0735 0.0121 31 1 -0.3633 0.0116 1.0277 32 1 -0.3633 0.8842 -0.5238 33 1 -0.3634 -0.8957 -0.5037 34 1 6.7557 1.4523 -0.0278 35 1 6.9152 -1.0276 -0.0014 36 1 1.9099 -2.9416 -0.9691 37 1 3.1233 -1.7544 -1.5085 38 1 3.8430 -3.2491 -3.3131 39 1 2.0782 -3.0351 -3.4124 40 1 3.4790 -5.9444 -4.4020 41 1 3.3946 -6.6685 -6.0056 42 1 3.7375 -6.6385 -1.8071 43 1 4.8032 -5.3340 -2.3843 44 1 6.0061 -5.0794 -0.2214 45 1 5.0832 -5.0361 1.3000 46 1 5.1086 -6.5194 0.3163 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044818108.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:31 Heat of formation + Delta-G solvation = 145.098928 kcal Electronic energy + Delta-G solvation = -31245.074068 eV Core-core repulsion = 27174.009046 eV Total energy + Delta-G solvation = -4071.065021 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.32339 -41.83854 -40.08242 -38.95681 -36.67544 -36.15308 -33.99019 -33.81260 -33.26174 -32.12756 -30.94351 -29.88806 -28.51919 -26.77580 -25.92668 -25.27565 -24.83029 -23.51093 -22.36730 -21.90857 -20.60887 -19.72780 -19.45793 -19.28613 -18.41809 -17.92230 -17.30163 -16.91946 -16.46349 -16.41438 -15.94776 -15.62847 -15.43390 -15.09197 -14.92627 -14.77460 -14.75442 -14.60736 -14.18740 -14.05933 -13.81413 -13.60685 -13.35185 -13.30293 -13.14581 -12.93532 -12.77332 -12.64723 -12.46015 -12.20200 -12.09097 -11.88902 -11.77913 -11.47774 -11.27993 -11.23682 -10.95257 -10.72340 -10.52773 -10.04960 -9.85359 -9.16630 -8.40951 -5.35821 -1.14361 -0.49796 0.46541 1.06516 1.42531 1.52616 1.57058 1.67075 1.81178 2.09668 2.21083 2.55400 2.68806 2.91365 3.36945 3.42185 3.49222 3.58508 3.68197 3.76511 3.79420 3.91018 4.04335 4.12290 4.16482 4.36979 4.42378 4.46559 4.57873 4.60616 4.64551 4.65401 4.69932 4.74117 4.81908 4.84262 4.86887 4.99327 5.04838 5.12356 5.23482 5.25254 5.28488 5.46533 5.57627 5.98622 6.17170 6.47289 6.60757 6.67243 7.05744 7.95607 8.07575 9.10802 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.011800 B = 0.003502 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.261288 B = 7992.967953 C = 9320.147112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.260 3.740 3 N -0.548 5.548 4 C 0.425 3.575 5 N -0.466 5.466 6 C 0.230 3.770 7 C -0.133 4.133 8 C 0.121 3.879 9 C 0.559 3.441 10 O -0.520 6.520 11 N -0.579 5.579 12 C 0.137 3.863 13 C -0.141 4.141 14 C 0.182 3.818 15 H 0.045 0.955 16 N -0.747 5.747 17 C -0.328 4.328 18 H 0.067 0.933 19 C -0.102 4.102 20 N -0.976 5.976 21 Si 1.127 2.873 22 H -0.287 1.287 23 H -0.271 1.271 24 H -0.294 1.294 25 C -0.123 4.123 26 C 0.150 3.850 27 H 0.087 0.913 28 C -0.125 4.125 29 N -0.325 5.325 30 N -0.340 5.340 31 H 0.109 0.891 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.258 0.742 35 H 0.217 0.783 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.042 0.958 39 H 0.056 0.944 40 H 0.359 0.641 41 H 0.244 0.756 42 H 0.079 0.921 43 H 0.057 0.943 44 H 0.062 0.938 45 H 0.065 0.935 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.834 14.453 18.073 23.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.019 4.019 3 N -0.282 5.282 4 C 0.065 3.935 5 N -0.182 5.182 6 C 0.045 3.955 7 C -0.158 4.158 8 C 0.001 3.999 9 C 0.344 3.656 10 O -0.397 6.397 11 N -0.310 5.310 12 C 0.013 3.987 13 C -0.182 4.182 14 C 0.073 3.927 15 H 0.063 0.937 16 N -0.389 5.389 17 C -0.460 4.460 18 H 0.085 0.915 19 C -0.294 4.294 20 N -0.624 5.624 21 Si 0.952 3.048 22 H -0.214 1.214 23 H -0.196 1.196 24 H -0.220 1.220 25 C -0.162 4.162 26 C 0.048 3.952 27 H 0.105 0.895 28 C -0.182 4.182 29 N -0.107 5.107 30 N -0.173 5.173 31 H 0.127 0.873 32 H 0.121 0.879 33 H 0.117 0.883 34 H 0.274 0.726 35 H 0.233 0.767 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.190 0.810 41 H 0.054 0.946 42 H 0.098 0.902 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.484 14.233 17.081 22.682 hybrid contribution 1.193 -0.439 0.859 1.534 sum 5.676 13.794 17.940 23.331 Atomic orbital electron populations 1.20476 0.80069 1.05819 1.05782 1.25420 1.00203 0.84346 0.91955 1.70678 0.97296 1.29573 1.30604 1.23099 0.94356 0.78670 0.97340 1.67943 0.96235 1.36780 1.17207 1.24692 0.95578 0.91865 0.83386 1.22860 0.98539 0.95462 0.98960 1.21243 0.83427 0.94356 1.00895 1.17784 0.82611 0.84915 0.80249 1.90920 1.34453 1.69051 1.45257 1.48149 1.28337 1.07859 1.46664 1.22229 0.91970 0.95416 0.89050 1.22551 1.00749 0.98829 0.96050 1.20288 0.96671 0.90511 0.85206 0.93663 1.42632 1.08400 1.71166 1.16657 1.20374 0.89379 1.35399 1.00820 0.91520 1.27133 1.06772 0.98558 0.96902 1.70965 1.00185 1.50615 1.40657 0.82629 0.71059 0.76319 0.74786 1.21357 1.19638 1.22025 1.22163 0.98414 1.00782 0.94794 1.21432 1.01106 0.76913 0.95738 0.89484 1.22102 0.95781 1.00167 1.00197 1.49060 1.06192 1.09001 1.46425 1.79029 0.83511 1.20646 1.34067 0.87253 0.87878 0.88313 0.72628 0.76666 0.89380 0.90623 0.93935 0.92531 0.80960 0.94569 0.90224 0.92408 0.91858 0.91576 0.91704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.01 10.51 71.24 0.75 -0.26 16 2 C 0.26 6.60 8.09 138.68 1.12 7.72 16 3 N -0.55 -15.77 11.24 -191.24 -2.15 -17.92 16 4 C 0.43 11.41 8.99 261.61 2.35 13.76 16 5 N -0.47 -9.64 10.45 -197.70 -2.07 -11.70 16 6 C 0.23 2.29 11.26 85.24 0.96 3.25 16 7 C -0.13 -1.68 9.64 22.43 0.22 -1.46 16 8 C 0.12 2.69 5.99 40.56 0.24 2.93 16 9 C 0.56 14.47 7.40 86.75 0.64 15.11 16 10 O -0.52 -13.98 12.22 -3.93 -0.05 -14.03 16 11 N -0.58 -16.02 2.97 -798.56 -2.37 -18.39 16 12 C 0.14 4.05 4.24 86.37 0.37 4.41 16 13 C -0.14 -5.05 5.66 30.67 0.17 -4.87 16 14 C 0.18 7.06 2.73 45.02 0.12 7.18 16 15 H 0.05 1.81 8.08 -2.39 -0.02 1.79 16 16 N -0.75 -37.12 5.12 -322.80 -1.65 -38.77 16 17 C -0.33 -18.17 9.93 84.04 0.83 -17.34 16 18 H 0.07 3.60 7.83 -2.91 -0.02 3.58 16 19 C -0.10 -5.89 5.50 84.86 0.47 -5.43 16 20 N -0.98 -60.86 13.70 21.65 0.30 -60.56 16 21 Si 1.13 51.64 29.92 68.60 2.05 53.69 16 22 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 23 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 24 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 25 C -0.12 -3.92 4.84 30.67 0.15 -3.77 16 26 C 0.15 4.06 3.48 44.97 0.16 4.22 16 27 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 28 C -0.13 -3.08 7.60 71.98 0.55 -2.53 16 29 N -0.32 -8.48 2.82 -187.17 -0.53 -9.01 16 30 N -0.34 -9.27 7.90 -51.44 -0.41 -9.68 16 31 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.26 -0.65 8.06 -2.91 -0.02 -0.67 16 35 H 0.22 1.27 7.98 -2.91 -0.02 1.24 16 36 H 0.09 2.61 7.14 -2.39 -0.02 2.59 16 37 H 0.08 2.29 4.28 -2.39 -0.01 2.28 16 38 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.36 18.75 6.63 -92.71 -0.61 18.14 16 41 H 0.24 15.16 6.77 -92.70 -0.63 14.53 16 42 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 43 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 44 H 0.06 1.69 6.74 -2.39 -0.02 1.67 16 45 H 0.07 1.68 6.77 -2.39 -0.02 1.66 16 46 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -78.85 367.09 2.78 -76.07 By element: Atomic # 1 Polarization: 26.82 SS G_CDS: 0.56 Total: 27.37 kcal Atomic # 6 Polarization: 13.83 SS G_CDS: 9.10 Total: 22.93 kcal Atomic # 7 Polarization: -157.15 SS G_CDS: -8.88 Total: -166.03 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.05 Total: -14.03 kcal Atomic # 14 Polarization: 51.64 SS G_CDS: 2.05 Total: 53.69 kcal Total: -78.85 2.78 -76.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044818108.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 221.168 kcal (2) G-P(sol) polarization free energy of solvation -78.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds