Wall clock time and date at job start Wed Apr 1 2020 02:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35678 * 120.48707 * 2 1 4 4 C 1.40172 * 119.27135 * 179.97438 * 3 2 1 5 5 N 1.31255 * 120.35991 * 0.02562 * 4 3 2 6 6 C 1.33990 * 120.88043 * 359.97438 * 5 4 3 7 7 N 1.32499 * 132.34872 * 180.31929 * 6 5 4 8 8 C 1.33469 * 109.75622 * 180.08308 * 7 6 5 9 9 C 1.48127 * 125.32110 * 179.88108 * 8 7 6 10 10 O 1.21528 * 119.99754 * 187.49499 * 9 8 7 11 11 N 1.34776 * 120.00131 * 7.49640 * 9 8 7 12 12 C 1.46926 * 120.63217 * 6.85704 * 11 9 8 13 13 C 1.53158 * 108.76838 * 233.58512 * 12 11 9 14 14 C 1.53036 * 109.32851 * 305.35545 * 13 12 11 15 15 H 1.09002 * 109.45922 * 181.38499 * 14 13 12 16 16 N 1.46496 * 109.46053 * 301.35791 * 14 13 12 17 17 C 1.36941 * 119.99758 * 275.02716 * 16 14 13 18 18 H 1.07995 * 120.00438 * 0.02562 * 17 16 14 19 19 C 1.38814 * 119.99851 * 179.97438 * 17 16 14 20 20 N 1.31622 * 120.00135 * 0.02562 * 19 17 16 21 21 Si 1.86791 * 120.00141 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47028 * 90.00212 * 21 19 17 23 23 H 1.48498 * 109.47164 * 330.00255 * 21 19 17 24 24 H 1.48506 * 109.47537 * 210.00005 * 21 19 17 25 25 C 1.53044 * 109.52680 * 61.37378 * 14 13 12 26 26 C 1.46924 * 120.63076 * 186.83208 * 11 9 8 27 27 H 1.09000 * 109.58780 * 246.20363 * 26 11 9 28 28 C 1.53002 * 109.58637 * 6.62842 * 26 11 9 29 29 N 1.31986 * 109.34966 * 359.61805 * 8 7 6 30 30 N 1.36175 * 120.48484 * 179.97438 * 2 1 3 31 31 H 1.08990 * 109.47741 * 270.02093 * 1 2 3 32 32 H 1.09007 * 109.47051 * 30.03046 * 1 2 3 33 33 H 1.09003 * 109.47350 * 150.01709 * 1 2 3 34 34 H 1.07996 * 120.36242 * 359.95514 * 3 2 1 35 35 H 1.07996 * 119.82188 * 180.02562 * 4 3 2 36 36 H 1.09000 * 109.58325 * 353.37742 * 12 11 9 37 37 H 1.09004 * 109.58290 * 113.65345 * 12 11 9 38 38 H 1.09001 * 109.47883 * 185.40080 * 13 12 11 39 39 H 1.09010 * 109.50037 * 65.32050 * 13 12 11 40 40 H 0.96995 * 120.00252 * 95.02986 * 16 14 13 41 41 H 0.97006 * 119.99781 * 359.97438 * 20 19 17 42 42 H 1.08999 * 109.49721 * 58.59181 * 25 14 13 43 43 H 1.08996 * 109.49509 * 178.69331 * 25 14 13 44 44 H 1.09004 * 109.47184 * 172.00679 * 28 26 11 45 45 H 1.08999 * 109.47257 * 292.01175 * 28 26 11 46 46 H 1.09003 * 109.47071 * 52.00900 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1692 0.0000 4 6 3.5967 1.1395 0.0005 5 7 4.2360 -0.0069 0.0005 6 6 3.5665 -1.1676 0.0005 7 7 3.9688 -2.4300 0.0060 8 6 2.9090 -3.2413 0.0013 9 6 2.9636 -4.7216 0.0026 10 8 1.9438 -5.3673 -0.1393 11 7 4.1440 -5.3523 0.1612 12 6 5.3607 -4.5940 0.4828 13 6 6.4442 -4.9430 -0.5419 14 6 6.6400 -6.4604 -0.5750 15 1 7.4280 -6.7094 -1.2858 16 7 7.0189 -6.9328 0.7589 17 6 8.3314 -6.9032 1.1485 18 1 9.0871 -6.5311 0.4727 19 6 8.6904 -7.3503 2.4127 20 7 7.7693 -7.8033 3.2367 21 14 10.4807 -7.3105 2.9440 22 1 10.7756 -6.0078 3.5929 23 1 11.3538 -7.4801 1.7549 24 1 10.7361 -8.4121 3.9067 25 6 5.3350 -7.1354 -1.0034 26 6 4.2386 -6.8113 0.0162 27 1 4.4902 -7.2585 0.9779 28 6 2.9003 -7.3656 -0.4761 29 7 1.8048 -2.5182 0.0011 30 7 2.1978 -1.1735 0.0005 31 1 -0.3634 0.0004 1.0275 32 1 -0.3633 0.8898 -0.5143 33 1 -0.3634 -0.8901 -0.5136 34 1 1.6693 2.1124 -0.0007 35 1 4.1536 2.0648 0.0010 36 1 5.1475 -3.5259 0.4399 37 1 5.7022 -4.8585 1.4836 38 1 7.3803 -4.4613 -0.2594 39 1 6.1382 -4.5940 -1.5282 40 1 6.3402 -7.2667 1.3661 41 1 6.8396 -7.8243 2.9607 42 1 5.0395 -6.7658 -1.9853 43 1 5.4816 -8.2145 -1.0493 44 1 3.0118 -8.4226 -0.7184 45 1 2.1492 -7.2492 0.3052 46 1 2.5863 -6.8201 -1.3661 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044845565.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:42 Heat of formation + Delta-G solvation = 150.935763 kcal Electronic energy + Delta-G solvation = -30774.996277 eV Core-core repulsion = 26704.184360 eV Total energy + Delta-G solvation = -4070.811917 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.30693 -40.45283 -39.06319 -37.47171 -35.70511 -34.41625 -33.04242 -31.99921 -31.65415 -31.31072 -29.03089 -28.77217 -27.05395 -25.61508 -24.62839 -23.91717 -23.33601 -22.27772 -21.66384 -20.18360 -19.08896 -18.56795 -18.08517 -17.21265 -17.15395 -16.77389 -15.98600 -15.86937 -15.28422 -14.72097 -14.58999 -14.31168 -14.14258 -13.95417 -13.78841 -13.59767 -13.45224 -13.24832 -13.03466 -12.99197 -12.96409 -12.66159 -12.10621 -11.93655 -11.81624 -11.57828 -11.29244 -10.94218 -10.67312 -10.57713 -10.44416 -10.33028 -10.17197 -10.09425 -9.94798 -9.62430 -9.22888 -9.13009 -9.08153 -8.79115 -8.22939 -6.96640 -6.03861 -3.03378 -0.08391 0.23592 1.34176 1.56885 2.65234 2.84467 2.98862 3.30438 3.55705 3.57542 3.60541 3.74260 3.75911 4.16069 4.31574 4.57562 4.70867 4.72509 4.76458 4.79700 5.12960 5.21889 5.25968 5.42687 5.44548 5.52280 5.58657 5.61569 5.69687 5.78222 5.80681 5.84481 5.97653 6.01038 6.16330 6.24809 6.40698 6.49264 6.54632 6.66546 6.75909 6.81489 6.88737 7.03714 7.13627 7.38209 7.62381 7.88410 8.17255 8.81222 9.28646 10.15021 10.30562 11.44254 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.013702 B = 0.003123 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.045673 B = 8962.589766 C =10330.856407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.204 3.796 3 C -0.229 4.229 4 C 0.212 3.788 5 N -0.452 5.452 6 C 0.442 3.558 7 N -0.488 5.488 8 C 0.251 3.749 9 C 0.602 3.398 10 O -0.513 6.513 11 N -0.567 5.567 12 C 0.070 3.930 13 C -0.139 4.139 14 C 0.176 3.824 15 H 0.051 0.949 16 N -0.733 5.733 17 C -0.326 4.326 18 H 0.065 0.935 19 C -0.047 4.047 20 N -0.945 5.945 21 Si 1.081 2.919 22 H -0.296 1.296 23 H -0.296 1.296 24 H -0.289 1.289 25 C -0.133 4.133 26 C 0.146 3.854 27 H 0.081 0.919 28 C -0.140 4.140 29 N -0.271 5.271 30 N -0.328 5.328 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.175 0.825 35 H 0.193 0.807 36 H 0.141 0.859 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.048 0.952 40 H 0.366 0.634 41 H 0.254 0.746 42 H 0.063 0.937 43 H 0.076 0.924 44 H 0.049 0.951 45 H 0.074 0.926 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.226 20.728 -9.061 27.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.086 3.914 3 C -0.254 4.254 4 C 0.026 3.974 5 N -0.167 5.167 6 C 0.083 3.917 7 N -0.222 5.222 8 C -0.033 4.033 9 C 0.383 3.617 10 O -0.388 6.388 11 N -0.298 5.298 12 C -0.052 4.052 13 C -0.180 4.180 14 C 0.066 3.934 15 H 0.069 0.931 16 N -0.377 5.377 17 C -0.457 4.457 18 H 0.083 0.917 19 C -0.244 4.244 20 N -0.591 5.591 21 Si 0.913 3.087 22 H -0.224 1.224 23 H -0.222 1.222 24 H -0.215 1.215 25 C -0.172 4.172 26 C 0.044 3.956 27 H 0.099 0.901 28 C -0.197 4.197 29 N -0.104 5.104 30 N -0.109 5.109 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.110 0.890 34 H 0.192 0.808 35 H 0.210 0.790 36 H 0.157 0.843 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.066 0.934 40 H 0.200 0.800 41 H 0.065 0.935 42 H 0.082 0.918 43 H 0.095 0.905 44 H 0.067 0.933 45 H 0.093 0.907 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.936 19.188 -8.025 25.036 hybrid contribution -1.758 0.779 -1.037 2.184 sum -15.694 19.967 -9.062 26.965 Atomic orbital electron populations 1.21096 0.86204 1.05687 1.05115 1.20968 0.96798 0.81957 0.91695 1.21839 0.95779 0.97901 1.09888 1.23659 0.91741 0.95866 0.86174 1.68119 1.36140 0.95032 1.17393 1.23159 0.78300 0.93995 0.96236 1.70811 1.26772 0.96027 1.28631 1.24570 0.85655 0.97116 0.95936 1.16511 0.84518 0.81673 0.79000 1.90870 1.34342 1.63264 1.50287 1.48049 1.07860 1.08071 1.65851 1.22959 0.82810 0.99808 0.99608 1.22371 0.98444 0.99803 0.97385 1.20188 0.93225 0.91195 0.88774 0.93067 1.42501 1.06357 1.76604 1.12216 1.20064 0.84787 1.39957 1.00863 0.91748 1.25710 1.06445 0.99378 0.92853 1.70858 1.01349 1.49455 1.37466 0.83208 0.74024 0.76281 0.75213 1.22421 1.22238 1.21544 1.22268 0.95571 1.01498 0.97897 1.21368 0.96505 0.77776 0.99978 0.90065 1.22228 0.95530 0.99041 1.02915 1.78867 1.19303 0.82805 1.29466 1.49088 1.09167 1.06372 1.46292 0.88397 0.88293 0.89009 0.80754 0.79006 0.84270 0.90691 0.90802 0.93379 0.80006 0.93505 0.91832 0.90540 0.93256 0.90666 0.91863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.56 10.13 36.01 0.36 -0.19 16 2 C 0.20 1.55 6.86 -81.58 -0.56 0.99 16 3 C -0.23 -0.98 9.72 -39.77 -0.39 -1.37 16 4 C 0.21 1.25 11.27 -17.07 -0.19 1.06 16 5 N -0.45 -5.29 10.48 -13.79 -0.14 -5.43 16 6 C 0.44 6.41 8.99 -323.04 -2.90 3.50 16 7 N -0.49 -8.29 7.57 -12.23 -0.09 -8.38 16 8 C 0.25 4.35 7.67 -156.79 -1.20 3.15 16 9 C 0.60 11.05 7.49 -12.20 -0.09 10.96 16 10 O -0.51 -9.90 12.68 5.34 0.07 -9.83 16 11 N -0.57 -10.37 2.97 -166.24 -0.49 -10.86 16 12 C 0.07 1.33 6.05 -3.73 -0.02 1.31 16 13 C -0.14 -2.66 5.78 -26.63 -0.15 -2.81 16 14 C 0.18 3.59 3.10 -67.89 -0.21 3.38 16 15 H 0.05 1.08 8.08 -51.93 -0.42 0.66 16 16 N -0.73 -18.11 4.31 -53.39 -0.23 -18.34 16 17 C -0.33 -9.08 9.93 -15.06 -0.15 -9.23 16 18 H 0.06 1.78 7.83 -52.49 -0.41 1.37 16 19 C -0.05 -1.35 5.50 -17.43 -0.10 -1.45 16 20 N -0.95 -29.39 13.70 55.49 0.76 -28.63 16 21 Si 1.08 26.31 29.92 -169.99 -5.09 21.22 16 22 H -0.30 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.30 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 C -0.13 -2.34 5.07 -26.61 -0.13 -2.47 16 26 C 0.15 2.60 3.19 -67.60 -0.22 2.38 16 27 H 0.08 1.58 6.64 -51.93 -0.34 1.24 16 28 C -0.14 -2.28 7.62 37.16 0.28 -1.99 16 29 N -0.27 -4.30 12.68 32.02 0.41 -3.89 16 30 N -0.33 -4.19 3.91 -10.07 -0.04 -4.23 16 31 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.10 0.12 8.09 -51.92 -0.42 -0.30 16 33 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.18 -0.05 8.06 -52.49 -0.42 -0.48 16 35 H 0.19 0.24 8.06 -52.49 -0.42 -0.18 16 36 H 0.14 2.62 3.69 -78.53 -0.29 2.33 16 37 H 0.07 1.64 7.74 -51.93 -0.40 1.24 16 38 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 39 H 0.05 0.85 8.14 -51.92 -0.42 0.42 16 40 H 0.37 9.37 4.89 -40.82 -0.20 9.17 16 41 H 0.25 7.79 6.78 -40.82 -0.28 7.52 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.07 1.30 6.67 -51.93 -0.35 0.95 16 46 H 0.06 1.06 6.83 -51.93 -0.35 0.70 16 LS Contribution 368.23 15.07 5.55 5.55 Total: -1.00 -36.72 368.23 -11.04 -47.76 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -6.06 Total: 7.84 kcal Atomic # 6 Polarization: 12.90 SS G_CDS: -5.67 Total: 7.22 kcal Atomic # 7 Polarization: -79.93 SS G_CDS: 0.17 Total: -79.76 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.07 Total: -9.83 kcal Atomic # 14 Polarization: 26.31 SS G_CDS: -5.09 Total: 21.22 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.72 -11.04 -47.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044845565.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.696 kcal (2) G-P(sol) polarization free energy of solvation -36.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds