Wall clock time and date at job start Wed Apr 1 2020 02:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35678 * 120.48707 * 2 1 4 4 C 1.40172 * 119.27135 * 179.97438 * 3 2 1 5 5 N 1.31255 * 120.35991 * 0.02562 * 4 3 2 6 6 C 1.33990 * 120.88043 * 359.97438 * 5 4 3 7 7 N 1.32499 * 132.34872 * 180.31929 * 6 5 4 8 8 C 1.33469 * 109.75622 * 180.08308 * 7 6 5 9 9 C 1.48127 * 125.32110 * 179.88108 * 8 7 6 10 10 O 1.21528 * 119.99754 * 187.49499 * 9 8 7 11 11 N 1.34776 * 120.00131 * 7.49640 * 9 8 7 12 12 C 1.46926 * 120.63217 * 6.85704 * 11 9 8 13 13 C 1.53158 * 108.76838 * 233.58512 * 12 11 9 14 14 C 1.53036 * 109.32851 * 305.35545 * 13 12 11 15 15 H 1.09002 * 109.45922 * 181.38499 * 14 13 12 16 16 N 1.46496 * 109.46053 * 301.35791 * 14 13 12 17 17 C 1.36941 * 119.99758 * 275.02716 * 16 14 13 18 18 H 1.07995 * 120.00438 * 0.02562 * 17 16 14 19 19 C 1.38814 * 119.99851 * 179.97438 * 17 16 14 20 20 N 1.31622 * 120.00135 * 0.02562 * 19 17 16 21 21 Si 1.86791 * 120.00141 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47028 * 90.00212 * 21 19 17 23 23 H 1.48498 * 109.47164 * 330.00255 * 21 19 17 24 24 H 1.48506 * 109.47537 * 210.00005 * 21 19 17 25 25 C 1.53044 * 109.52680 * 61.37378 * 14 13 12 26 26 C 1.46924 * 120.63076 * 186.83208 * 11 9 8 27 27 H 1.09000 * 109.58780 * 246.20363 * 26 11 9 28 28 C 1.53002 * 109.58637 * 6.62842 * 26 11 9 29 29 N 1.31986 * 109.34966 * 359.61805 * 8 7 6 30 30 N 1.36175 * 120.48484 * 179.97438 * 2 1 3 31 31 H 1.08990 * 109.47741 * 270.02093 * 1 2 3 32 32 H 1.09007 * 109.47051 * 30.03046 * 1 2 3 33 33 H 1.09003 * 109.47350 * 150.01709 * 1 2 3 34 34 H 1.07996 * 120.36242 * 359.95514 * 3 2 1 35 35 H 1.07996 * 119.82188 * 180.02562 * 4 3 2 36 36 H 1.09000 * 109.58325 * 353.37742 * 12 11 9 37 37 H 1.09004 * 109.58290 * 113.65345 * 12 11 9 38 38 H 1.09001 * 109.47883 * 185.40080 * 13 12 11 39 39 H 1.09010 * 109.50037 * 65.32050 * 13 12 11 40 40 H 0.96995 * 120.00252 * 95.02986 * 16 14 13 41 41 H 0.97006 * 119.99781 * 359.97438 * 20 19 17 42 42 H 1.08999 * 109.49721 * 58.59181 * 25 14 13 43 43 H 1.08996 * 109.49509 * 178.69331 * 25 14 13 44 44 H 1.09004 * 109.47184 * 172.00679 * 28 26 11 45 45 H 1.08999 * 109.47257 * 292.01175 * 28 26 11 46 46 H 1.09003 * 109.47071 * 52.00900 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1692 0.0000 4 6 3.5967 1.1395 0.0005 5 7 4.2360 -0.0069 0.0005 6 6 3.5665 -1.1676 0.0005 7 7 3.9688 -2.4300 0.0060 8 6 2.9090 -3.2413 0.0013 9 6 2.9636 -4.7216 0.0026 10 8 1.9438 -5.3673 -0.1393 11 7 4.1440 -5.3523 0.1612 12 6 5.3607 -4.5940 0.4828 13 6 6.4442 -4.9430 -0.5419 14 6 6.6400 -6.4604 -0.5750 15 1 7.4280 -6.7094 -1.2858 16 7 7.0189 -6.9328 0.7589 17 6 8.3314 -6.9032 1.1485 18 1 9.0871 -6.5311 0.4727 19 6 8.6904 -7.3503 2.4127 20 7 7.7693 -7.8033 3.2367 21 14 10.4807 -7.3105 2.9440 22 1 10.7756 -6.0078 3.5929 23 1 11.3538 -7.4801 1.7549 24 1 10.7361 -8.4121 3.9067 25 6 5.3350 -7.1354 -1.0034 26 6 4.2386 -6.8113 0.0162 27 1 4.4902 -7.2585 0.9779 28 6 2.9003 -7.3656 -0.4761 29 7 1.8048 -2.5182 0.0011 30 7 2.1978 -1.1735 0.0005 31 1 -0.3634 0.0004 1.0275 32 1 -0.3633 0.8898 -0.5143 33 1 -0.3634 -0.8901 -0.5136 34 1 1.6693 2.1124 -0.0007 35 1 4.1536 2.0648 0.0010 36 1 5.1475 -3.5259 0.4399 37 1 5.7022 -4.8585 1.4836 38 1 7.3803 -4.4613 -0.2594 39 1 6.1382 -4.5940 -1.5282 40 1 6.3402 -7.2667 1.3661 41 1 6.8396 -7.8243 2.9607 42 1 5.0395 -6.7658 -1.9853 43 1 5.4816 -8.2145 -1.0493 44 1 3.0118 -8.4226 -0.7184 45 1 2.1492 -7.2492 0.3052 46 1 2.5863 -6.8201 -1.3661 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044845565.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:41 Heat of formation + Delta-G solvation = 128.066654 kcal Electronic energy + Delta-G solvation = -30775.987956 eV Core-core repulsion = 26704.184360 eV Total energy + Delta-G solvation = -4071.803596 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.23600 -41.81928 -39.96578 -39.01929 -36.48088 -36.19511 -34.34907 -33.81497 -32.65984 -32.28162 -30.67201 -29.53585 -28.56126 -26.78674 -25.58367 -25.41780 -25.22447 -23.32168 -22.90250 -21.55476 -20.35690 -19.65206 -19.28749 -18.98254 -18.19244 -17.92792 -17.34894 -16.97524 -16.56545 -16.26346 -15.85838 -15.50234 -15.43025 -15.22505 -15.05227 -14.86016 -14.59297 -14.50090 -14.24096 -13.92625 -13.83934 -13.49883 -13.41604 -13.36332 -13.18758 -12.88201 -12.67205 -12.64616 -12.33867 -12.19454 -12.07457 -11.85594 -11.74273 -11.20110 -11.18484 -11.08316 -10.98637 -10.80591 -10.48827 -9.96663 -9.75922 -9.06435 -8.33829 -5.26838 -0.78930 -0.54526 0.49086 0.50636 1.47098 1.58968 1.69824 1.82760 1.83507 2.08500 2.26834 2.67389 2.73914 3.12759 3.22313 3.44548 3.67573 3.71430 3.81976 3.87743 3.99501 4.05768 4.21565 4.25836 4.26966 4.35373 4.38242 4.46472 4.50398 4.52404 4.55497 4.71646 4.79103 4.92359 4.94961 4.96529 5.06226 5.09820 5.11924 5.20315 5.22310 5.28806 5.35378 5.62195 5.66781 6.06424 6.23355 6.47874 6.53393 6.78238 7.13739 8.04456 8.16802 9.17699 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.013702 B = 0.003123 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.045673 B = 8962.589766 C =10330.856407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.169 3.831 3 C -0.187 4.187 4 C 0.223 3.777 5 N -0.492 5.492 6 C 0.427 3.573 7 N -0.526 5.526 8 C 0.229 3.771 9 C 0.603 3.397 10 O -0.528 6.528 11 N -0.569 5.569 12 C 0.081 3.919 13 C -0.128 4.128 14 C 0.171 3.829 15 H 0.050 0.950 16 N -0.741 5.741 17 C -0.319 4.319 18 H 0.067 0.933 19 C -0.108 4.108 20 N -0.978 5.978 21 Si 1.128 2.872 22 H -0.288 1.288 23 H -0.272 1.272 24 H -0.296 1.296 25 C -0.121 4.121 26 C 0.145 3.855 27 H 0.058 0.942 28 C -0.126 4.126 29 N -0.290 5.290 30 N -0.328 5.328 31 H 0.105 0.895 32 H 0.142 0.858 33 H 0.065 0.935 34 H 0.237 0.763 35 H 0.246 0.754 36 H 0.151 0.849 37 H 0.037 0.963 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.359 0.641 41 H 0.241 0.759 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.070 0.930 45 H 0.061 0.939 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.901 24.639 -10.497 31.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.053 3.947 3 C -0.210 4.210 4 C 0.042 3.958 5 N -0.209 5.209 6 C 0.069 3.931 7 N -0.262 5.262 8 C -0.054 4.054 9 C 0.385 3.615 10 O -0.404 6.404 11 N -0.300 5.300 12 C -0.041 4.041 13 C -0.169 4.169 14 C 0.062 3.938 15 H 0.068 0.932 16 N -0.384 5.384 17 C -0.451 4.451 18 H 0.085 0.915 19 C -0.299 4.299 20 N -0.627 5.627 21 Si 0.954 3.046 22 H -0.215 1.215 23 H -0.198 1.198 24 H -0.223 1.223 25 C -0.160 4.160 26 C 0.042 3.958 27 H 0.076 0.924 28 C -0.183 4.183 29 N -0.125 5.125 30 N -0.110 5.110 31 H 0.124 0.876 32 H 0.160 0.840 33 H 0.084 0.916 34 H 0.254 0.746 35 H 0.262 0.738 36 H 0.167 0.833 37 H 0.056 0.944 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.192 0.808 41 H 0.051 0.949 42 H 0.104 0.896 43 H 0.100 0.900 44 H 0.089 0.911 45 H 0.080 0.920 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.650 23.183 -9.517 29.028 hybrid contribution -1.675 -0.053 -0.650 1.798 sum -16.326 23.130 -10.167 30.081 Atomic orbital electron populations 1.21223 0.84038 1.06528 1.05834 1.21995 0.98661 0.81108 0.92914 1.22636 0.95101 0.98741 1.04558 1.24774 0.93202 0.95651 0.82221 1.68251 1.37113 0.95499 1.20070 1.23200 0.79161 0.94145 0.96629 1.70405 1.27578 0.97627 1.30569 1.24108 0.86531 0.96502 0.98294 1.16648 0.84045 0.82529 0.78249 1.90842 1.34585 1.64093 1.50874 1.47994 1.07717 1.08120 1.66180 1.22783 0.83162 1.00685 0.97492 1.22219 0.97743 0.98571 0.98329 1.20399 0.94666 0.92076 0.86647 0.93214 1.42649 1.05295 1.76758 1.13734 1.20382 0.86110 1.37928 1.00633 0.91527 1.27088 1.09541 0.99719 0.93502 1.70969 1.01133 1.52173 1.38442 0.82600 0.70249 0.76199 0.75545 1.21520 1.19761 1.22254 1.22155 0.93674 1.01586 0.98577 1.21361 0.97618 0.77747 0.99043 0.92444 1.22073 0.93958 1.00112 1.02131 1.78663 1.19310 0.84612 1.29964 1.49106 1.09198 1.06380 1.46278 0.87645 0.83958 0.91559 0.74633 0.73806 0.83348 0.94429 0.92297 0.91375 0.80832 0.94866 0.89627 0.89985 0.91147 0.91976 0.92082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 10.13 71.24 0.72 0.00 16 2 C 0.17 2.08 6.86 41.29 0.28 2.36 16 3 C -0.19 -0.56 9.72 22.15 0.22 -0.35 16 4 C 0.22 1.62 11.27 85.25 0.96 2.58 16 5 N -0.49 -10.67 10.48 -197.54 -2.07 -12.74 16 6 C 0.43 12.39 8.99 261.57 2.35 14.74 16 7 N -0.53 -18.63 7.57 -192.62 -1.46 -20.09 16 8 C 0.23 8.36 7.67 137.40 1.05 9.42 16 9 C 0.60 23.30 7.49 86.87 0.65 23.95 16 10 O -0.53 -21.28 12.68 -3.80 -0.05 -21.33 16 11 N -0.57 -21.87 2.97 -798.15 -2.37 -24.25 16 12 C 0.08 3.27 6.05 86.35 0.52 3.79 16 13 C -0.13 -5.01 5.78 30.66 0.18 -4.84 16 14 C 0.17 7.07 3.10 45.02 0.14 7.21 16 15 H 0.05 2.08 8.08 -2.39 -0.02 2.07 16 16 N -0.74 -37.92 4.31 -322.82 -1.39 -39.31 16 17 C -0.32 -18.14 9.93 84.03 0.83 -17.31 16 18 H 0.07 3.70 7.83 -2.91 -0.02 3.68 16 19 C -0.11 -6.39 5.50 84.86 0.47 -5.93 16 20 N -0.98 -62.91 13.70 21.65 0.30 -62.62 16 21 Si 1.13 53.61 29.92 68.60 2.05 55.66 16 22 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 23 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 24 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 25 C -0.12 -4.25 5.07 30.67 0.16 -4.10 16 26 C 0.14 5.34 3.19 44.98 0.14 5.49 16 27 H 0.06 2.40 6.64 -2.39 -0.02 2.38 16 28 C -0.13 -4.14 7.62 71.98 0.55 -3.60 16 29 N -0.29 -9.56 12.68 -52.60 -0.67 -10.23 16 30 N -0.33 -8.24 3.91 -185.76 -0.73 -8.97 16 31 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.14 -0.42 8.09 -2.38 -0.02 -0.44 16 33 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.24 -2.18 8.06 -2.91 -0.02 -2.21 16 35 H 0.25 -0.99 8.06 -2.91 -0.02 -1.01 16 36 H 0.15 5.94 3.69 -54.91 -0.20 5.74 16 37 H 0.04 1.77 7.74 -2.38 -0.02 1.76 16 38 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 40 H 0.36 19.37 4.89 -92.71 -0.45 18.92 16 41 H 0.24 15.57 6.78 -92.70 -0.63 14.94 16 42 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 43 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 44 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 45 H 0.06 2.21 6.67 -2.39 -0.02 2.20 16 46 H 0.06 2.04 6.83 -2.39 -0.02 2.03 16 Total: -1.00 -87.43 368.23 3.36 -84.07 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: 0.53 Total: 26.36 kcal Atomic # 6 Polarization: 24.22 SS G_CDS: 9.22 Total: 33.44 kcal Atomic # 7 Polarization: -169.81 SS G_CDS: -8.39 Total: -178.20 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.05 Total: -21.33 kcal Atomic # 14 Polarization: 53.61 SS G_CDS: 2.05 Total: 55.66 kcal Total: -87.43 3.36 -84.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044845565.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.136 kcal (2) G-P(sol) polarization free energy of solvation -87.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds