Wall clock time and date at job start Wed Apr 1 2020 02:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35673 * 120.48619 * 2 1 4 4 C 1.40178 * 119.27310 * 179.97438 * 3 2 1 5 5 N 1.31259 * 120.35581 * 0.02562 * 4 3 2 6 6 C 1.33989 * 120.87924 * 359.97438 * 5 4 3 7 7 N 1.32500 * 132.34278 * 180.02562 * 6 5 4 8 8 C 1.33469 * 109.75381 * 180.02562 * 7 6 5 9 9 C 1.48128 * 125.32397 * 180.02562 * 8 7 6 10 10 O 1.21525 * 119.99817 * 187.45029 * 9 8 7 11 11 N 1.34770 * 119.99888 * 7.45501 * 9 8 7 12 12 C 1.46926 * 120.63400 * 7.54686 * 11 9 8 13 13 C 1.53626 * 108.54300 * 126.37012 * 12 11 9 14 14 C 1.53043 * 109.24232 * 54.85805 * 13 12 11 15 15 H 1.09006 * 109.45321 * 58.52994 * 14 13 12 16 16 N 1.46491 * 109.45900 * 178.48613 * 14 13 12 17 17 C 1.36936 * 120.00704 * 275.06854 * 16 14 13 18 18 H 1.08007 * 119.99800 * 0.02562 * 17 16 14 19 19 C 1.38811 * 120.00524 * 179.97438 * 17 16 14 20 20 N 1.31620 * 119.99953 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00121 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46911 * 60.00111 * 21 19 17 23 23 H 1.48496 * 109.47289 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47228 * 300.00331 * 21 19 17 25 25 C 1.53041 * 109.53813 * 298.51233 * 14 13 12 26 26 C 1.46925 * 120.62896 * 187.83242 * 11 9 8 27 27 H 1.08995 * 109.59214 * 113.79514 * 26 11 9 28 28 C 1.53005 * 109.58744 * 353.36796 * 26 11 9 29 29 N 1.31987 * 109.35189 * 359.97438 * 8 7 6 30 30 N 1.36172 * 120.48593 * 179.72472 * 2 1 3 31 31 H 1.08997 * 109.47132 * 89.99742 * 1 2 3 32 32 H 1.08996 * 109.46954 * 329.99653 * 1 2 3 33 33 H 1.09000 * 109.46935 * 209.99941 * 1 2 3 34 34 H 1.08006 * 120.36597 * 0.02562 * 3 2 1 35 35 H 1.07996 * 119.81822 * 179.97438 * 4 3 2 36 36 H 1.09001 * 109.58488 * 246.20424 * 12 11 9 37 37 H 1.09002 * 109.58328 * 6.62918 * 12 11 9 38 38 H 1.08998 * 109.63669 * 294.86350 * 13 12 11 39 39 H 1.08996 * 109.42812 * 174.72425 * 13 12 11 40 40 H 0.97007 * 120.00098 * 95.07279 * 16 14 13 41 41 H 0.96997 * 119.99977 * 180.02562 * 20 19 17 42 42 H 1.08998 * 109.49158 * 301.40870 * 25 14 13 43 43 H 1.09003 * 109.52200 * 181.33280 * 25 14 13 44 44 H 1.08989 * 109.46935 * 60.14330 * 28 26 11 45 45 H 1.09002 * 109.46805 * 180.14610 * 28 26 11 46 46 H 1.08999 * 109.47033 * 300.13839 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1692 0.0000 4 6 3.5968 1.1395 0.0005 5 7 4.2360 -0.0069 0.0005 6 6 3.5665 -1.1676 0.0005 7 7 3.9689 -2.4300 0.0010 8 6 2.9091 -3.2413 0.0002 9 6 2.9636 -4.7215 0.0009 10 8 1.9432 -5.3672 -0.1364 11 7 4.1447 -5.3523 0.1539 12 6 5.3600 -4.5958 0.4849 13 6 5.9974 -5.2186 1.7364 14 6 6.2333 -6.7109 1.4927 15 1 6.8798 -6.8393 0.6245 16 7 6.8742 -7.3022 2.6699 17 6 8.2349 -7.2429 2.8111 18 1 8.8357 -6.7597 2.0547 19 6 8.8421 -7.8027 3.9267 20 7 8.1099 -8.3911 4.8487 21 14 10.6984 -7.7223 4.1189 22 1 11.1318 -6.3023 4.1493 23 1 11.0943 -8.3883 5.3857 24 1 11.3450 -8.4128 2.9741 25 6 4.8938 -7.4060 1.2382 26 6 4.2428 -6.8087 -0.0133 27 1 4.8538 -7.0359 -0.8868 28 6 2.8432 -7.3995 -0.1951 29 7 1.8048 -2.5183 -0.0002 30 7 2.1979 -1.1735 0.0056 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3633 0.8899 0.5139 33 1 -0.3633 -0.8900 0.5138 34 1 1.6693 2.1124 0.0004 35 1 4.1535 2.0649 0.0001 36 1 6.0603 -4.6463 -0.3488 37 1 5.1003 -3.5561 0.6843 38 1 5.3311 -5.0900 2.5893 39 1 6.9492 -4.7284 1.9405 40 1 6.3346 -7.7360 3.3494 41 1 8.5342 -8.7820 5.6285 42 1 4.2379 -7.2569 2.0959 43 1 5.0596 -8.4728 1.0882 44 1 2.3779 -6.9659 -1.0802 45 1 2.9180 -8.4802 -0.3163 46 1 2.2367 -7.1735 0.6820 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044845567.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:49 Heat of formation + Delta-G solvation = 124.497574 kcal Electronic energy + Delta-G solvation = -30173.820732 eV Core-core repulsion = 26101.862369 eV Total energy + Delta-G solvation = -4071.958363 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.18914 -41.72407 -39.89738 -38.80187 -36.45071 -36.21206 -34.26768 -33.72894 -32.63625 -32.23188 -31.05987 -29.51495 -28.51003 -26.69965 -25.93710 -25.35203 -24.47455 -23.28789 -22.65441 -21.62437 -20.64230 -19.66999 -19.15080 -18.95101 -18.06385 -17.95411 -17.13204 -16.74436 -16.57858 -16.47524 -15.58749 -15.52425 -15.39300 -15.19848 -14.87074 -14.73672 -14.58485 -14.32819 -14.13317 -13.90132 -13.75827 -13.55231 -13.35671 -13.31593 -13.11758 -12.91980 -12.78393 -12.66189 -12.54211 -12.21847 -12.08128 -12.07159 -11.76571 -11.41652 -11.24045 -11.09139 -10.95141 -10.77240 -10.53280 -9.91901 -9.74826 -8.99970 -7.92300 -5.21313 -0.75482 -0.51681 0.53405 0.55033 1.47907 1.51196 1.51747 1.57007 1.87417 2.11868 2.29694 2.57388 2.71355 3.16535 3.24637 3.40542 3.70072 3.74340 3.84885 4.02793 4.08502 4.11390 4.24569 4.28006 4.30465 4.41646 4.49110 4.53699 4.54714 4.58916 4.62543 4.70776 4.83096 4.94806 4.97697 5.01370 5.09343 5.11493 5.15622 5.23271 5.29963 5.39333 5.46824 5.53328 5.66307 6.08478 6.24604 6.29094 6.51215 6.83003 7.34941 8.09821 8.34071 9.31232 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.014112 B = 0.002717 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.605048 B =10302.426585 C =11801.383628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.169 3.831 3 C -0.188 4.188 4 C 0.223 3.777 5 N -0.491 5.491 6 C 0.426 3.574 7 N -0.523 5.523 8 C 0.227 3.773 9 C 0.604 3.396 10 O -0.527 6.527 11 N -0.574 5.574 12 C 0.091 3.909 13 C -0.135 4.135 14 C 0.174 3.826 15 H 0.053 0.947 16 N -0.737 5.737 17 C -0.236 4.236 18 H 0.078 0.922 19 C -0.079 4.079 20 N -0.973 5.973 21 Si 0.973 3.027 22 H -0.278 1.278 23 H -0.298 1.298 24 H -0.276 1.276 25 C -0.122 4.122 26 C 0.150 3.850 27 H 0.099 0.901 28 C -0.128 4.128 29 N -0.294 5.294 30 N -0.329 5.329 31 H 0.107 0.893 32 H 0.140 0.860 33 H 0.064 0.936 34 H 0.235 0.765 35 H 0.245 0.755 36 H 0.081 0.919 37 H 0.132 0.868 38 H 0.037 0.963 39 H 0.063 0.937 40 H 0.370 0.630 41 H 0.250 0.750 42 H 0.050 0.950 43 H 0.082 0.918 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.802 25.738 -14.479 33.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.053 3.947 3 C -0.212 4.212 4 C 0.041 3.959 5 N -0.208 5.208 6 C 0.067 3.933 7 N -0.259 5.259 8 C -0.056 4.056 9 C 0.387 3.613 10 O -0.403 6.403 11 N -0.306 5.306 12 C -0.032 4.032 13 C -0.176 4.176 14 C 0.065 3.935 15 H 0.071 0.929 16 N -0.375 5.375 17 C -0.368 4.368 18 H 0.096 0.904 19 C -0.270 4.270 20 N -0.624 5.624 21 Si 0.802 3.198 22 H -0.204 1.204 23 H -0.224 1.224 24 H -0.202 1.202 25 C -0.161 4.161 26 C 0.048 3.952 27 H 0.117 0.883 28 C -0.186 4.186 29 N -0.130 5.130 30 N -0.111 5.111 31 H 0.126 0.874 32 H 0.158 0.842 33 H 0.083 0.917 34 H 0.252 0.748 35 H 0.261 0.739 36 H 0.099 0.901 37 H 0.149 0.851 38 H 0.055 0.945 39 H 0.082 0.918 40 H 0.202 0.798 41 H 0.058 0.942 42 H 0.069 0.931 43 H 0.101 0.899 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.587 24.564 -14.592 33.037 hybrid contribution 0.277 -0.390 0.956 1.069 sum -16.310 24.173 -13.636 32.192 Atomic orbital electron populations 1.21214 0.84170 1.06381 1.05877 1.21956 0.98598 0.81194 0.92934 1.22621 0.95174 0.98721 1.04682 1.24750 0.93129 0.95706 0.82317 1.68242 1.37060 0.95490 1.20017 1.23202 0.79095 0.94243 0.96747 1.70694 1.27726 0.97404 1.30113 1.24200 0.86493 0.96720 0.98219 1.16640 0.84174 0.82346 0.78183 1.90866 1.34754 1.63936 1.50713 1.48042 1.07786 1.08527 1.66212 1.22787 0.84903 0.98467 0.97031 1.22514 0.99792 0.98592 0.96677 1.20424 0.92410 0.90913 0.89726 0.92917 1.42629 1.03988 1.67758 1.23166 1.19604 0.84549 1.28969 1.03673 0.90417 1.25570 1.02236 1.01842 0.97396 1.69826 1.35788 1.44622 1.12115 0.85219 0.80350 0.77664 0.76597 1.20436 1.22399 1.20233 1.22159 0.96090 1.00617 0.97262 1.21520 0.98861 0.76762 0.98073 0.88292 1.22125 0.93485 0.99930 1.03022 1.78677 1.19595 0.84606 1.30074 1.49117 1.09280 1.06383 1.46301 0.87442 0.84201 0.91696 0.74811 0.73899 0.90051 0.85089 0.94453 0.91845 0.79811 0.94153 0.93127 0.89940 0.91402 0.91252 0.93126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 10.13 71.24 0.72 0.08 16 2 C 0.17 1.92 6.86 41.29 0.28 2.21 16 3 C -0.19 -0.42 9.72 22.15 0.22 -0.20 16 4 C 0.22 1.36 11.27 85.25 0.96 2.32 16 5 N -0.49 -9.79 10.48 -197.54 -2.07 -11.86 16 6 C 0.43 11.49 8.99 261.57 2.35 13.84 16 7 N -0.52 -16.94 7.65 -192.62 -1.47 -18.41 16 8 C 0.23 7.66 7.63 137.40 1.05 8.71 16 9 C 0.60 21.17 7.61 86.87 0.66 21.83 16 10 O -0.53 -19.75 12.49 -3.79 -0.05 -19.80 16 11 N -0.57 -18.94 2.97 -797.24 -2.36 -21.30 16 12 C 0.09 2.99 6.09 86.51 0.53 3.52 16 13 C -0.13 -5.24 5.67 30.82 0.17 -5.06 16 14 C 0.17 7.15 2.73 45.02 0.12 7.27 16 15 H 0.05 2.14 8.08 -2.38 -0.02 2.12 16 16 N -0.74 -38.36 5.12 -322.81 -1.65 -40.02 16 17 C -0.24 -13.34 9.93 84.03 0.83 -12.50 16 18 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 19 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 20 N -0.97 -61.08 13.06 21.65 0.28 -60.80 16 21 Si 0.97 47.05 29.55 68.60 2.03 49.08 16 22 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 23 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 24 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 25 C -0.12 -4.35 4.84 30.67 0.15 -4.20 16 26 C 0.15 4.61 3.49 44.98 0.16 4.77 16 27 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 28 C -0.13 -3.79 7.60 71.98 0.55 -3.25 16 29 N -0.29 -9.19 12.68 -52.60 -0.67 -9.85 16 30 N -0.33 -7.80 3.91 -185.77 -0.73 -8.53 16 31 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.14 -0.43 8.09 -2.39 -0.02 -0.45 16 33 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.24 -2.29 8.06 -2.91 -0.02 -2.31 16 35 H 0.25 -1.23 8.06 -2.91 -0.02 -1.25 16 36 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.13 4.51 4.15 -21.65 -0.09 4.42 16 38 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 40 H 0.37 20.94 7.80 -92.70 -0.72 20.22 16 41 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 42 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 44 H 0.07 2.07 6.54 -2.39 -0.02 2.06 16 45 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.05 1.69 6.95 -2.39 -0.02 1.67 16 Total: -1.00 -85.33 374.41 2.75 -82.58 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: 0.22 Total: 23.73 kcal Atomic # 6 Polarization: 25.97 SS G_CDS: 9.22 Total: 35.19 kcal Atomic # 7 Polarization: -162.10 SS G_CDS: -8.67 Total: -170.77 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.05 Total: -19.80 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -85.33 2.75 -82.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044845567.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.078 kcal (2) G-P(sol) polarization free energy of solvation -85.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds