Wall clock time and date at job start Wed Apr 1 2020 03:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40193 * 126.58890 * 2 1 4 4 N 1.28671 * 109.51131 * 180.02562 * 3 2 1 5 5 C 1.35329 * 109.99779 * 359.97438 * 4 3 2 6 6 C 1.39910 * 133.26865 * 180.02562 * 5 4 3 7 7 C 1.39431 * 118.09584 * 179.97438 * 6 5 4 8 8 C 1.47722 * 120.34631 * 179.97438 * 7 6 5 9 9 O 1.21567 * 120.00254 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99643 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99734 * 180.27827 * 10 8 7 12 12 C 1.52996 * 109.46181 * 59.72328 * 11 10 8 13 13 C 1.53039 * 109.46034 * 299.74388 * 11 10 8 14 14 C 1.53164 * 109.33102 * 301.36508 * 13 11 10 15 15 N 1.46925 * 108.76621 * 305.35499 * 14 13 11 16 16 C 1.36938 * 120.62659 * 233.63392 * 15 14 13 17 17 H 1.07998 * 119.99905 * 151.81009 * 16 15 14 18 18 C 1.38809 * 120.00043 * 331.80550 * 16 15 14 19 19 N 1.31620 * 119.99917 * 343.08253 * 18 16 15 20 20 Si 1.86808 * 120.00053 * 163.08405 * 18 16 15 21 21 H 1.48502 * 109.46988 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46809 * 119.99956 * 20 18 16 23 23 H 1.48500 * 109.46564 * 240.00005 * 20 18 16 24 24 C 1.46918 * 118.74114 * 53.60482 * 15 14 13 25 25 C 1.53044 * 109.45842 * 179.69704 * 11 10 8 26 26 C 1.40113 * 119.29833 * 0.25626 * 7 6 5 27 27 N 1.31265 * 121.14868 * 359.48195 * 26 7 6 28 28 C 1.32714 * 121.79972 * 0.51798 * 27 26 7 29 29 H 1.09003 * 109.47276 * 89.97492 * 1 2 3 30 30 H 1.08999 * 109.46850 * 209.97523 * 1 2 3 31 31 H 1.08996 * 109.47234 * 329.97117 * 1 2 3 32 32 H 1.07996 * 120.94871 * 359.97438 * 6 5 4 33 33 H 0.97002 * 120.00374 * 359.97438 * 10 8 7 34 34 H 1.08999 * 109.47647 * 59.99980 * 12 11 10 35 35 H 1.08999 * 109.46768 * 180.02562 * 12 11 10 36 36 H 1.09004 * 109.46925 * 299.99523 * 12 11 10 37 37 H 1.09010 * 109.49053 * 61.30016 * 13 11 10 38 38 H 1.08992 * 109.50104 * 181.39369 * 13 11 10 39 39 H 1.08994 * 109.58969 * 185.56480 * 14 13 11 40 40 H 1.09002 * 109.70655 * 65.20820 * 14 13 11 41 41 H 0.97006 * 119.99658 * 179.97438 * 19 18 16 42 42 H 1.09006 * 109.58850 * 186.60742 * 24 15 14 43 43 H 1.09006 * 109.70689 * 66.25331 * 24 15 14 44 44 H 1.09003 * 109.49744 * 178.60882 * 25 11 10 45 45 H 1.09005 * 109.49461 * 298.66711 * 25 11 10 46 46 H 1.08001 * 119.42413 * 179.72708 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3006 1.1257 0.0000 4 7 3.5306 0.7478 -0.0005 5 6 3.5996 -0.6037 -0.0004 6 6 4.6658 -1.5096 -0.0003 7 6 4.3699 -2.8721 0.0005 8 6 5.4573 -3.8720 0.0000 9 8 6.6174 -3.5085 -0.0015 10 7 5.1633 -5.1873 0.0002 11 6 6.2416 -6.1789 0.0059 12 6 7.1038 -5.9872 1.2552 13 6 7.1068 -5.9985 -1.2434 14 6 6.2338 -6.1567 -2.4919 15 7 5.5382 -7.4489 -2.4215 16 6 5.6231 -8.3441 -3.4544 17 1 5.5293 -9.4024 -3.2607 18 6 5.8294 -7.8912 -4.7502 19 7 5.6149 -6.6271 -5.0475 20 14 6.4117 -9.0758 -6.0720 21 1 6.5769 -10.4299 -5.4853 22 1 5.4081 -9.1297 -7.1652 23 1 7.7122 -8.6095 -6.6164 24 6 4.7503 -7.7627 -1.2218 25 6 5.6402 -7.5862 0.0126 26 6 3.0304 -3.2828 -0.0044 27 7 2.0519 -2.4079 0.0006 28 6 2.2824 -1.1009 0.0002 29 1 -0.3634 0.0004 -1.0277 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3633 0.8897 0.5143 32 1 5.6888 -1.1633 -0.0008 33 1 4.2376 -5.4774 0.0011 34 1 6.4877 -6.1153 2.1452 35 1 7.9065 -6.7247 1.2593 36 1 7.5320 -4.9848 1.2508 37 1 7.5536 -5.0042 -1.2359 38 1 7.8946 -6.7517 -1.2524 39 1 6.8613 -6.1275 -3.3827 40 1 5.5023 -5.3497 -2.5336 41 1 5.7595 -6.3105 -5.9530 42 1 4.3989 -8.7932 -1.2746 43 1 3.8964 -7.0884 -1.1561 44 1 6.4417 -8.3246 -0.0081 45 1 5.0433 -7.7225 0.9145 46 1 2.7989 -4.3378 -0.0083 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045505099.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:53 Heat of formation + Delta-G solvation = 101.543144 kcal Electronic energy + Delta-G solvation = -30593.392333 eV Core-core repulsion = 26520.438591 eV Total energy + Delta-G solvation = -4072.953742 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.52560 -41.59867 -39.81707 -38.62520 -36.16060 -35.95413 -33.87818 -33.33268 -32.69506 -31.56035 -31.25992 -29.01974 -28.70174 -26.24232 -25.83138 -25.38283 -23.87448 -22.88529 -22.61640 -22.07558 -20.28309 -19.75620 -19.08649 -18.77268 -17.84335 -17.62225 -17.23272 -16.80707 -16.24132 -15.98026 -15.64676 -15.33135 -15.12321 -14.98762 -14.82684 -14.71313 -14.54575 -14.32700 -14.10967 -14.01824 -13.90268 -13.67315 -13.23759 -13.16083 -12.92868 -12.82202 -12.78342 -12.54852 -12.49611 -12.16311 -12.06559 -11.90512 -11.69797 -11.46547 -11.25230 -10.95462 -10.50038 -10.49762 -10.47249 -10.15169 -9.89057 -8.60539 -7.83136 -5.27510 -0.98140 -0.55342 0.68072 0.85353 1.46086 1.49373 1.58311 1.68841 2.03493 2.53400 2.54374 2.61326 2.97050 3.06991 3.32239 3.39238 3.52375 3.66173 3.79270 3.93613 4.12666 4.14307 4.20693 4.30696 4.31488 4.56956 4.60388 4.60542 4.68476 4.75863 4.78834 4.87146 4.91798 4.97222 5.03043 5.13339 5.22804 5.25412 5.28386 5.43304 5.45838 5.57763 5.67090 5.71039 5.83782 6.27244 6.43276 6.57221 6.61975 7.19745 7.24354 7.93399 8.43197 9.22107 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.013312 B = 0.003010 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.878179 B = 9301.619694 C =10259.300417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.376 5.376 3 N 0.000 5.000 4 N -0.220 5.220 5 C -0.089 4.089 6 C 0.078 3.922 7 C -0.203 4.203 8 C 0.572 3.428 9 O -0.559 6.559 10 N -0.695 5.695 11 C 0.189 3.811 12 C -0.152 4.152 13 C -0.140 4.140 14 C 0.191 3.809 15 N -0.608 5.608 16 C -0.254 4.254 17 H 0.070 0.930 18 C -0.052 4.052 19 N -0.934 5.934 20 Si 0.959 3.041 21 H -0.264 1.264 22 H -0.294 1.294 23 H -0.297 1.297 24 C 0.138 3.862 25 C -0.125 4.125 26 C 0.223 3.777 27 N -0.486 5.486 28 C 0.276 3.724 29 H 0.098 0.902 30 H 0.111 0.889 31 H 0.121 0.879 32 H 0.165 0.835 33 H 0.408 0.592 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.037 0.963 40 H -0.003 1.003 41 H 0.245 0.755 42 H 0.059 0.941 43 H 0.029 0.971 44 H 0.073 0.927 45 H 0.102 0.898 46 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.845 7.064 16.358 20.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.173 5.173 3 N 0.019 4.981 4 N -0.099 5.099 5 C -0.216 4.216 6 C 0.047 3.953 7 C -0.212 4.212 8 C 0.359 3.641 9 O -0.438 6.438 10 N -0.347 5.347 11 C 0.104 3.896 12 C -0.210 4.210 13 C -0.180 4.180 14 C 0.065 3.935 15 N -0.331 5.331 16 C -0.384 4.384 17 H 0.087 0.913 18 C -0.248 4.248 19 N -0.580 5.580 20 Si 0.788 3.212 21 H -0.188 1.188 22 H -0.222 1.222 23 H -0.224 1.224 24 C 0.013 3.987 25 C -0.164 4.164 26 C 0.048 3.952 27 N -0.200 5.200 28 C 0.032 3.968 29 H 0.116 0.884 30 H 0.130 0.870 31 H 0.139 0.861 32 H 0.182 0.818 33 H 0.246 0.754 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.056 0.944 40 H 0.015 0.985 41 H 0.054 0.946 42 H 0.078 0.922 43 H 0.047 0.953 44 H 0.092 0.908 45 H 0.120 0.880 46 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -10.017 8.725 16.222 20.967 hybrid contribution 0.704 -0.992 -1.506 1.936 sum -9.313 7.733 14.716 19.055 Atomic orbital electron populations 1.22546 0.69186 1.07264 1.05967 1.50352 1.09576 1.01467 1.55910 1.81660 0.94032 1.07047 1.15362 1.74837 1.11886 1.10503 1.12722 1.20527 0.95004 0.91395 1.14640 1.21120 0.99239 0.89853 0.85079 1.20740 0.95657 0.93768 1.11007 1.17786 0.87626 0.82629 0.76075 1.90726 1.21212 1.80747 1.51164 1.45884 1.10822 1.04520 1.73500 1.20228 0.86883 0.87945 0.94577 1.22131 0.99953 1.02739 0.96200 1.22389 0.98551 1.00911 0.96164 1.20331 0.92715 0.85842 0.94565 1.44287 1.55285 1.16971 1.16588 1.19541 1.43260 0.89226 0.86390 0.91282 1.25733 1.02329 0.97514 0.99187 1.70197 1.52963 1.16111 1.18774 0.85331 0.77051 0.79389 0.79439 1.18788 1.22178 1.22425 1.21119 0.92522 0.99077 0.86011 1.22234 1.00812 0.94016 0.99305 1.23513 0.85606 1.00036 0.86004 1.66755 1.36765 0.98094 1.18386 1.19775 0.89030 0.89628 0.98392 0.88379 0.87009 0.86072 0.81788 0.75364 0.90757 0.91342 0.92437 0.92207 0.92641 0.94430 0.98529 0.94575 0.92243 0.95327 0.90835 0.88011 0.77581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.91 11.54 127.77 1.47 2.39 16 2 N -0.38 -7.90 4.10 -366.46 -1.50 -9.40 16 3 N 0.00 0.01 13.71 37.02 0.51 0.51 16 4 N -0.22 -6.20 12.40 -52.14 -0.65 -6.85 16 5 C -0.09 -2.41 7.27 39.63 0.29 -2.13 16 6 C 0.08 2.02 9.75 22.96 0.22 2.24 16 7 C -0.20 -4.98 5.88 -20.03 -0.12 -5.09 16 8 C 0.57 16.30 7.19 86.75 0.62 16.93 16 9 O -0.56 -19.45 12.61 -3.93 -0.05 -19.50 16 10 N -0.70 -17.77 4.06 -425.75 -1.73 -19.49 16 11 C 0.19 5.38 0.66 3.63 0.00 5.38 16 12 C -0.15 -3.75 8.40 71.98 0.60 -3.15 16 13 C -0.14 -5.36 4.67 30.66 0.14 -5.22 16 14 C 0.19 9.05 5.04 86.35 0.44 9.49 16 15 N -0.61 -28.22 2.99 -699.17 -2.09 -30.31 16 16 C -0.25 -13.34 9.58 84.03 0.81 -12.54 16 17 H 0.07 3.51 7.88 -2.91 -0.02 3.49 16 18 C -0.05 -2.89 4.92 84.86 0.42 -2.47 16 19 N -0.93 -55.17 11.20 21.65 0.24 -54.92 16 20 Si 0.96 44.60 29.59 68.60 2.03 46.63 16 21 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 22 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 23 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 24 C 0.14 4.70 6.24 86.36 0.54 5.24 16 25 C -0.12 -3.24 4.96 30.67 0.15 -3.09 16 26 C 0.22 4.55 10.69 85.23 0.91 5.46 16 27 N -0.49 -10.91 10.37 -191.98 -1.99 -12.90 16 28 C 0.28 6.76 8.05 134.01 1.08 7.84 16 29 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.16 4.16 7.71 -2.91 -0.02 4.13 16 33 H 0.41 8.21 5.30 -92.71 -0.49 7.71 16 34 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.06 1.66 6.15 -2.39 -0.01 1.65 16 37 H 0.06 2.43 6.21 -2.38 -0.01 2.42 16 38 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.04 2.11 6.06 -2.39 -0.01 2.10 16 40 H 0.00 -0.17 7.74 -2.39 -0.02 -0.19 16 41 H 0.25 14.22 8.31 -92.70 -0.77 13.45 16 42 H 0.06 1.99 7.93 -2.38 -0.02 1.98 16 43 H 0.03 0.90 6.94 -2.38 -0.02 0.89 16 44 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.10 1.85 8.14 -2.38 -0.02 1.83 16 46 H 0.21 2.80 6.39 -2.91 -0.02 2.78 16 Total: -1.00 -73.34 368.97 2.89 -70.45 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 0.54 Total: 14.51 kcal Atomic # 6 Polarization: 13.70 SS G_CDS: 7.58 Total: 21.28 kcal Atomic # 7 Polarization: -126.15 SS G_CDS: -7.21 Total: -133.36 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.05 Total: -19.50 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -73.34 2.89 -70.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045505099.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.989 kcal (2) G-P(sol) polarization free energy of solvation -73.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds