Wall clock time and date at job start Wed Apr 1 2020 02:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99991 * 2 1 4 4 H 1.48503 * 109.47290 * 275.57421 * 3 2 1 5 5 H 1.48504 * 109.47275 * 35.57327 * 3 2 1 6 6 H 1.48502 * 109.47295 * 155.57214 * 3 2 1 7 7 C 1.38808 * 120.00531 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99982 * 336.35276 * 7 2 1 9 9 N 1.36938 * 120.00610 * 156.34247 * 7 2 1 10 10 C 1.50170 * 120.53950 * 140.23348 * 9 7 2 11 11 C 1.46244 * 107.53010 * 109.56988 * 10 9 7 12 12 C 1.52524 * 114.27574 * 58.40770 * 11 10 9 13 13 C 1.50123 * 105.42028 * 270.59180 * 12 11 10 14 14 H 1.09001 * 109.20361 * 337.38708 * 13 12 11 15 15 N 1.46495 * 109.21072 * 218.02971 * 13 12 11 16 16 C 1.34779 * 119.99897 * 154.99829 * 15 13 12 17 17 O 1.21281 * 119.99900 * 359.97438 * 16 15 13 18 18 C 1.50703 * 119.99984 * 179.97438 * 16 15 13 19 19 C 1.50697 * 109.47232 * 180.02562 * 18 16 15 20 20 N 1.32612 * 125.18164 * 270.00085 * 19 18 16 21 21 C 1.32831 * 109.75434 * 180.02562 * 20 19 18 22 22 N 1.33824 * 132.50197 * 179.97438 * 21 20 19 23 23 C 1.31352 * 120.85964 * 180.02562 * 22 21 20 24 24 C 1.40041 * 120.31484 * 359.97438 * 23 22 21 25 25 C 1.35779 * 119.24214 * 0.27426 * 24 23 22 26 26 N 1.35983 * 119.01936 * 359.45869 * 25 24 23 27 27 N 1.31179 * 125.18720 * 89.99714 * 19 18 16 28 28 C 1.54841 * 110.81520 * 97.68403 * 13 12 11 29 29 C 1.43440 * 120.53501 * 320.21595 * 9 7 2 30 30 H 0.96999 * 120.00168 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.84516 * 350.06376 * 10 9 7 32 32 H 1.08997 * 109.89613 * 229.10906 * 10 9 7 33 33 H 1.08989 * 108.52197 * 297.16368 * 11 10 9 34 34 H 1.08999 * 108.39593 * 179.55997 * 11 10 9 35 35 H 1.09003 * 110.24643 * 151.62096 * 12 11 10 36 36 H 1.08998 * 110.25116 * 29.56734 * 12 11 10 37 37 H 0.97003 * 119.99806 * 334.99739 * 15 13 12 38 38 H 1.08999 * 109.47057 * 59.99879 * 18 16 15 39 39 H 1.09002 * 109.47148 * 300.00139 * 18 16 15 40 40 H 1.08001 * 119.83726 * 180.02562 * 23 22 21 41 41 H 1.08001 * 120.37407 * 180.02562 * 24 23 22 42 42 H 1.07993 * 120.49159 * 179.72713 * 25 24 23 43 43 H 1.08999 * 109.36201 * 81.34108 * 28 13 12 44 44 H 1.08998 * 109.36256 * 200.92832 * 28 13 12 45 45 H 1.08999 * 108.15787 * 33.30584 * 29 9 7 46 46 H 1.09000 * 108.15662 * 150.08070 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3799 2.1145 -1.3935 5 1 1.5115 2.6159 0.8145 6 1 3.6017 1.4091 0.5790 7 6 2.0103 -1.2021 0.0005 8 1 1.5384 -2.0980 0.3761 9 7 3.2934 -1.2521 -0.4753 10 6 4.3320 -2.0868 0.2172 11 6 4.6339 -3.2242 -0.6511 12 6 5.1378 -2.8379 -2.0379 13 6 3.9073 -2.7088 -2.8882 14 1 3.0997 -3.2879 -2.4403 15 7 4.1898 -3.2312 -4.2273 16 6 3.1838 -3.6922 -4.9968 17 8 2.0449 -3.6750 -4.5803 18 6 3.4743 -4.2291 -6.3747 19 6 2.1884 -4.6764 -7.0209 20 7 1.6728 -5.8951 -6.9332 21 6 0.5361 -5.9519 -7.6181 22 7 -0.3417 -6.9389 -7.8327 23 6 -1.4144 -6.7394 -8.5641 24 6 -1.6581 -5.4834 -9.1335 25 6 -0.7703 -4.4773 -8.9255 26 7 0.3276 -4.7143 -8.1591 27 7 1.4086 -3.9197 -7.7557 28 6 3.4694 -1.2279 -3.0010 29 6 3.6670 -0.5084 -1.6435 30 1 -0.4850 0.8400 0.0004 31 1 3.9445 -2.4427 1.1718 32 1 5.2336 -1.4966 0.3809 33 1 3.7298 -3.8221 -0.7654 34 1 5.3933 -3.8363 -0.1648 35 1 5.7893 -3.6173 -2.4331 36 1 5.6683 -1.8867 -1.9952 37 1 5.1008 -3.2453 -4.5603 38 1 4.1567 -5.0757 -6.2984 39 1 3.9320 -3.4470 -6.9804 40 1 -2.1122 -7.5476 -8.7262 41 1 -2.5400 -5.3181 -9.7347 42 1 -0.9360 -3.5020 -9.3587 43 1 4.0686 -0.7310 -3.7639 44 1 2.4178 -1.1826 -3.2841 45 1 3.0854 0.4134 -1.6597 46 1 4.7200 -0.2415 -1.5539 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052932360.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:01 Heat of formation + Delta-G solvation = 107.113017 kcal Electronic energy + Delta-G solvation = -29882.071268 eV Core-core repulsion = 25809.359054 eV Total energy + Delta-G solvation = -4072.712214 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.01744 -41.18842 -39.95266 -39.32099 -36.36029 -35.66197 -34.62753 -33.63102 -33.13068 -32.29043 -31.83658 -30.31902 -28.02691 -25.96093 -25.65726 -25.16904 -24.71988 -22.90390 -21.90181 -21.21633 -21.07277 -19.51412 -19.17430 -18.53780 -18.38270 -17.74611 -17.44646 -17.21215 -16.88816 -16.31928 -16.14765 -15.68591 -15.49661 -15.24206 -14.99195 -14.73802 -14.66134 -14.25308 -14.18872 -13.87234 -13.76981 -13.73968 -13.59640 -13.38875 -13.16487 -13.10914 -12.69188 -12.41332 -12.23158 -12.08087 -11.78722 -11.63030 -11.49381 -11.40725 -11.27958 -11.09058 -11.05419 -10.66218 -10.58844 -10.04522 -9.94073 -8.68548 -8.23161 -5.62926 -0.53222 -0.36095 0.84064 1.28175 1.28918 1.37189 1.50862 1.57760 2.10119 2.32538 2.40941 2.41166 2.78905 2.99108 3.34361 3.35028 3.47520 3.78788 3.85888 3.94761 4.01685 4.13088 4.18421 4.26507 4.37396 4.38599 4.41448 4.52247 4.57418 4.69061 4.81896 4.83293 4.89937 4.96855 5.00577 5.05966 5.09560 5.17261 5.25674 5.34498 5.38986 5.39430 5.59258 5.63066 5.93456 6.14880 6.35137 6.57804 6.75856 7.01197 7.30529 7.63458 8.07195 8.97385 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.014091 B = 0.002662 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.649244 B =10514.026103 C =11548.014849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.026 4.026 3 Si 0.954 3.046 4 H -0.280 1.280 5 H -0.307 1.307 6 H -0.246 1.246 7 C -0.258 4.258 8 H 0.023 0.977 9 N -0.613 5.613 10 C 0.133 3.867 11 C -0.129 4.129 12 C -0.106 4.106 13 C 0.166 3.834 14 H 0.037 0.963 15 N -0.704 5.704 16 C 0.512 3.488 17 O -0.592 6.592 18 C -0.042 4.042 19 C 0.282 3.718 20 N -0.561 5.561 21 C 0.418 3.582 22 N -0.497 5.497 23 C 0.212 3.788 24 C -0.189 4.189 25 C 0.141 3.859 26 N -0.334 5.334 27 N -0.352 5.352 28 C -0.141 4.141 29 C 0.145 3.855 30 H 0.262 0.738 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.026 0.974 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.423 0.577 38 H 0.160 0.840 39 H 0.160 0.840 40 H 0.241 0.759 41 H 0.234 0.766 42 H 0.212 0.788 43 H 0.088 0.912 44 H 0.005 0.995 45 H 0.014 0.986 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.031 -10.342 -23.762 27.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.221 4.221 3 Si 0.782 3.218 4 H -0.207 1.207 5 H -0.235 1.235 6 H -0.170 1.170 7 C -0.388 4.388 8 H 0.040 0.960 9 N -0.337 5.337 10 C 0.011 3.989 11 C -0.168 4.168 12 C -0.143 4.143 13 C 0.062 3.938 14 H 0.055 0.945 15 N -0.357 5.357 16 C 0.297 3.703 17 O -0.471 6.471 18 C -0.084 4.084 19 C 0.001 3.999 20 N -0.294 5.294 21 C 0.058 3.942 22 N -0.213 5.213 23 C 0.029 3.971 24 C -0.213 4.213 25 C 0.006 3.994 26 N -0.113 5.113 27 N -0.184 5.184 28 C -0.183 4.183 29 C 0.018 3.982 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.045 0.955 34 H 0.107 0.893 35 H 0.124 0.876 36 H 0.111 0.889 37 H 0.262 0.738 38 H 0.178 0.822 39 H 0.178 0.822 40 H 0.257 0.743 41 H 0.250 0.750 42 H 0.228 0.772 43 H 0.106 0.894 44 H 0.024 0.976 45 H 0.032 0.968 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.902 -10.512 -22.848 26.363 hybrid contribution -0.959 1.447 -0.141 1.741 sum 6.943 -9.066 -22.989 25.669 Atomic orbital electron populations 1.70078 1.08217 1.27481 1.53956 1.26265 0.95634 1.01946 0.98306 0.85658 0.79825 0.79240 0.77086 1.20682 1.23549 1.16970 1.18540 0.89365 0.92507 1.38375 0.95952 1.44348 1.06932 1.56683 1.25768 1.20673 0.91210 0.92157 0.94849 1.20774 1.00270 0.98930 0.96841 1.21302 0.95213 1.04085 0.93743 1.20836 0.98208 0.93001 0.81794 0.94497 1.46043 1.10631 1.62659 1.16364 1.20773 0.84977 0.77160 0.87372 1.90807 1.24172 1.57225 1.74932 1.20220 0.90629 1.05921 0.91635 1.24052 0.96912 0.86445 0.92506 1.70536 1.09576 1.22570 1.26747 1.22963 0.94428 0.83133 0.93716 1.68112 1.04908 1.27956 1.20364 1.24674 0.89766 0.98948 0.83679 1.22689 1.02434 0.91473 1.04674 1.23158 0.82197 1.04670 0.89419 1.48838 1.17677 1.11231 1.33575 1.78323 0.98694 1.15811 1.25574 1.23114 0.98902 0.96754 0.99520 1.20761 0.98617 0.92811 0.86023 0.92963 0.92861 0.91473 0.95501 0.89294 0.87642 0.88862 0.73810 0.82241 0.82238 0.74293 0.74996 0.77155 0.89399 0.97574 0.96792 0.90715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -64.23 13.97 21.65 0.30 -63.93 16 2 C -0.03 -1.59 5.28 84.86 0.45 -1.14 16 3 Si 0.95 48.46 25.26 68.60 1.73 50.19 16 4 H -0.28 -13.73 6.73 99.48 0.67 -13.06 16 5 H -0.31 -15.67 7.11 99.48 0.71 -14.97 16 6 H -0.25 -11.46 7.11 99.48 0.71 -10.75 16 7 C -0.26 -15.69 9.92 84.03 0.83 -14.85 16 8 H 0.02 1.56 8.06 -2.91 -0.02 1.54 16 9 N -0.61 -29.56 2.14 -707.81 -1.51 -31.07 16 10 C 0.13 4.95 6.11 83.58 0.51 5.46 16 11 C -0.13 -4.00 5.20 28.36 0.15 -3.85 16 12 C -0.11 -2.66 5.34 29.51 0.16 -2.50 16 13 C 0.17 5.72 2.22 44.69 0.10 5.82 16 14 H 0.04 1.73 6.27 -2.39 -0.01 1.71 16 15 N -0.70 -18.35 4.97 -443.96 -2.21 -20.55 16 16 C 0.51 16.87 7.77 87.66 0.68 17.55 16 17 O -0.59 -28.55 15.70 -3.03 -0.05 -28.60 16 18 C -0.04 -0.99 6.33 29.10 0.18 -0.80 16 19 C 0.28 9.32 6.59 138.69 0.91 10.23 16 20 N -0.56 -20.60 11.25 -191.24 -2.15 -22.75 16 21 C 0.42 13.50 8.99 261.60 2.35 15.85 16 22 N -0.50 -12.55 10.48 -197.63 -2.07 -14.62 16 23 C 0.21 2.31 11.27 85.20 0.96 3.27 16 24 C -0.19 -1.19 10.06 22.14 0.22 -0.97 16 25 C 0.14 2.09 11.32 83.48 0.94 3.04 16 26 N -0.33 -9.40 3.91 -197.70 -0.77 -10.17 16 27 N -0.35 -11.60 12.78 -51.45 -0.66 -12.26 16 28 C -0.14 -5.63 5.98 31.87 0.19 -5.44 16 29 C 0.15 6.24 4.22 87.60 0.37 6.61 16 30 H 0.26 16.60 8.31 -92.71 -0.77 15.83 16 31 H 0.05 2.09 7.99 -2.39 -0.02 2.07 16 32 H 0.07 2.07 8.13 -2.39 -0.02 2.05 16 33 H 0.03 1.04 6.93 -2.39 -0.02 1.02 16 34 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.11 1.84 7.85 -2.39 -0.02 1.82 16 36 H 0.09 2.07 6.28 -2.39 -0.01 2.05 16 37 H 0.42 6.19 8.48 -92.71 -0.79 5.40 16 38 H 0.16 2.54 8.14 -2.39 -0.02 2.53 16 39 H 0.16 2.39 8.14 -2.39 -0.02 2.37 16 40 H 0.24 -0.10 8.06 -2.91 -0.02 -0.13 16 41 H 0.23 -1.31 8.06 -2.91 -0.02 -1.33 16 42 H 0.21 1.61 8.06 -2.91 -0.02 1.59 16 43 H 0.09 2.80 8.12 -2.39 -0.02 2.78 16 44 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 45 H 0.01 0.69 3.40 -2.39 -0.01 0.68 16 46 H 0.07 2.56 6.88 -2.39 -0.02 2.54 16 Total: -1.00 -109.26 371.43 1.84 -107.42 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: 0.21 Total: 8.08 kcal Atomic # 6 Polarization: 29.25 SS G_CDS: 9.02 Total: 38.26 kcal Atomic # 7 Polarization: -166.29 SS G_CDS: -9.07 Total: -175.36 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -0.05 Total: -28.60 kcal Atomic # 14 Polarization: 48.46 SS G_CDS: 1.73 Total: 50.19 kcal Total: -109.26 1.84 -107.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052932360.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 214.536 kcal (2) G-P(sol) polarization free energy of solvation -109.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -107.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds