Wall clock time and date at job start Wed Apr 1 2020 03:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39675 * 126.06841 * 2 1 4 4 C 1.38405 * 105.35938 * 179.84707 * 3 2 1 5 5 C 1.47160 * 126.88613 * 180.10383 * 4 3 2 6 6 O 1.21626 * 119.99963 * 184.67008 * 5 4 3 7 7 N 1.34781 * 119.99635 * 4.66362 * 5 4 3 8 8 C 1.46501 * 119.99753 * 184.46226 * 7 5 4 9 9 C 1.50693 * 109.47124 * 180.02562 * 8 7 5 10 10 C 1.40070 * 126.12792 * 259.69401 * 9 8 7 11 11 N 1.31018 * 108.25561 * 179.85345 * 10 9 8 12 12 N 1.39747 * 108.17517 * 0.60198 * 11 10 9 13 13 C 1.34653 * 126.12203 * 80.00098 * 9 8 7 14 14 C 1.51033 * 127.90995 * 359.65423 * 13 9 8 15 15 N 1.47505 * 106.99942 * 169.52657 * 14 13 9 16 16 C 1.36932 * 121.01282 * 222.90060 * 15 14 13 17 17 H 1.07997 * 120.00084 * 159.63009 * 16 15 14 18 18 C 1.38811 * 119.99910 * 339.63457 * 16 15 14 19 19 N 1.31620 * 120.00188 * 346.12102 * 18 16 15 20 20 Si 1.86801 * 120.00195 * 166.12245 * 18 16 15 21 21 H 1.48507 * 109.47025 * 89.99795 * 20 18 16 22 22 H 1.48503 * 109.47606 * 209.99556 * 20 18 16 23 23 H 1.48500 * 109.47217 * 330.00275 * 20 18 16 24 24 C 1.47084 * 117.97366 * 42.92515 * 15 14 13 25 25 C 1.46551 * 127.32000 * 179.18605 * 12 11 10 26 26 N 1.36599 * 106.23044 * 0.40798 * 4 3 2 27 27 C 1.46507 * 125.19132 * 179.73396 * 26 4 3 28 28 N 1.28439 * 109.62397 * 359.72939 * 26 4 3 29 29 H 1.08997 * 109.47266 * 269.71316 * 1 2 3 30 30 H 1.09007 * 109.47079 * 149.71770 * 1 2 3 31 31 H 1.08997 * 109.47341 * 29.72047 * 1 2 3 32 32 H 1.07995 * 127.31981 * 359.96506 * 3 2 1 33 33 H 0.96996 * 120.00440 * 4.46827 * 7 5 4 34 34 H 1.08999 * 109.47228 * 300.00532 * 8 7 5 35 35 H 1.09004 * 109.47107 * 60.00426 * 8 7 5 36 36 H 1.08001 * 125.87347 * 0.03985 * 10 9 8 37 37 H 1.09001 * 109.94932 * 288.89844 * 14 13 9 38 38 H 1.09001 * 109.94920 * 50.15744 * 14 13 9 39 39 H 0.97003 * 120.00229 * 180.02562 * 19 18 16 40 40 H 1.08999 * 109.51902 * 56.34273 * 24 15 14 41 41 H 1.09008 * 109.50963 * 176.49963 * 24 15 14 42 42 H 1.09002 * 109.51078 * 41.60253 * 25 12 11 43 43 H 1.09000 * 109.51141 * 281.45375 * 25 12 11 44 44 H 1.08990 * 109.47090 * 275.33245 * 27 26 4 45 45 H 1.09000 * 109.46588 * 35.32935 * 27 26 4 46 46 H 1.08997 * 109.46939 * 155.32612 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3293 1.1290 0.0000 4 6 3.6239 0.6396 0.0036 5 6 4.8664 1.4282 0.0071 6 8 5.9426 0.8678 -0.0757 7 7 4.8115 2.7716 0.1021 8 6 6.0405 3.5633 0.0074 9 6 5.7072 5.0265 0.1441 10 6 5.5885 5.9479 -0.9042 11 7 5.2868 7.1156 -0.3921 12 7 5.2177 6.9777 0.9968 13 6 5.4758 5.6837 1.2964 14 6 5.4862 5.1270 2.7003 15 7 5.4296 6.2780 3.6211 16 6 6.2169 6.3255 4.7404 17 1 6.4191 7.2725 5.2186 18 6 6.7553 5.1565 5.2604 19 7 6.3021 3.9877 4.8589 20 14 8.1228 5.2419 6.5300 21 1 7.5321 5.2818 7.8919 22 1 8.9922 4.0447 6.4025 23 1 8.9313 6.4670 6.3051 24 6 4.5012 7.3729 3.3005 25 6 4.9264 8.0245 1.9801 26 7 3.5173 -0.7222 -0.0039 27 6 4.6450 -1.6574 -0.0089 28 7 2.2775 -1.0578 -0.0057 29 1 -0.3633 -0.0051 1.0276 30 1 -0.3633 -0.8875 -0.5182 31 1 -0.3634 0.8924 -0.5095 32 1 2.0206 2.1639 -0.0005 33 1 3.9584 3.2141 0.2331 34 1 6.7237 3.2706 0.8047 35 1 6.5130 3.3867 -0.9590 36 1 5.7198 5.7323 -1.9543 37 1 4.6179 4.4859 2.8526 38 1 6.4021 4.5606 2.8690 39 1 6.6781 3.1708 5.2225 40 1 3.4907 6.9764 3.2020 41 1 4.5256 8.1160 4.0977 42 1 4.1196 8.6573 1.6101 43 1 5.8185 8.6291 2.1434 44 1 4.9857 -1.8102 -1.0329 45 1 5.4598 -1.2472 0.5877 46 1 4.3286 -2.6105 0.4149 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001069854492.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:26 Heat of formation + Delta-G solvation = 148.972169 kcal Electronic energy + Delta-G solvation = -30185.169237 eV Core-core repulsion = 26114.272172 eV Total energy + Delta-G solvation = -4070.897065 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.53278 -41.01652 -39.09308 -36.35653 -35.03153 -33.96286 -33.06087 -31.67372 -30.74732 -30.24952 -29.72852 -28.70422 -26.18427 -25.57595 -25.03239 -23.57967 -22.79165 -21.78734 -20.90763 -20.24481 -19.48812 -18.41719 -17.67859 -16.77699 -16.37999 -16.22900 -16.06250 -15.46399 -15.15053 -14.87673 -14.51746 -14.15178 -13.88988 -13.75958 -13.62859 -13.55542 -13.34678 -13.24167 -13.22683 -12.67492 -12.53165 -12.49612 -12.31394 -12.31286 -11.73441 -11.64373 -11.30134 -11.04915 -10.90753 -10.73156 -10.71461 -10.24051 -10.22124 -10.09651 -9.99234 -9.18439 -8.97082 -8.88499 -8.78446 -8.57123 -7.96845 -7.15387 -6.02441 -3.44211 1.30779 2.30996 2.44673 2.51933 2.92864 2.99032 3.27111 3.32705 3.35188 3.36398 3.65516 4.29088 4.41750 4.66089 4.91863 4.98972 5.04027 5.10766 5.15964 5.19172 5.33667 5.34457 5.46995 5.49609 5.52236 5.54080 5.57341 5.58333 5.68383 5.75167 5.82462 5.90786 6.07674 6.18291 6.33615 6.38192 6.46624 6.50704 6.58730 6.72032 6.91317 7.05339 7.17400 7.53965 7.57821 7.61806 8.04604 8.05950 8.20473 8.26800 8.90205 9.52265 10.02619 11.07548 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.009631 B = 0.003416 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2906.671149 B = 8194.843388 C = 9419.272349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.020 3.980 3 C -0.187 4.187 4 C -0.028 4.028 5 C 0.589 3.411 6 O -0.546 6.546 7 N -0.700 5.700 8 C 0.212 3.788 9 C -0.292 4.292 10 C 0.058 3.942 11 N -0.318 5.318 12 N -0.358 5.358 13 C 0.123 3.877 14 C 0.226 3.774 15 N -0.598 5.598 16 C -0.260 4.260 17 H 0.076 0.924 18 C 0.005 3.995 19 N -0.907 5.907 20 Si 0.910 3.090 21 H -0.285 1.285 22 H -0.287 1.287 23 H -0.279 1.279 24 C 0.129 3.871 25 C 0.113 3.887 26 N -0.259 5.259 27 C 0.090 3.910 28 N -0.282 5.282 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.160 0.840 33 H 0.403 0.597 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.176 0.824 37 H 0.055 0.945 38 H 0.121 0.879 39 H 0.260 0.740 40 H 0.036 0.964 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.107 0.893 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.749 -4.221 -10.388 13.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.136 4.136 3 C -0.216 4.216 4 C -0.156 4.156 5 C 0.374 3.626 6 O -0.424 6.424 7 N -0.350 5.350 8 C 0.089 3.911 9 C -0.304 4.304 10 C -0.129 4.129 11 N -0.138 5.138 12 N -0.139 5.139 13 C -0.009 4.009 14 C 0.099 3.901 15 N -0.321 5.321 16 C -0.388 4.388 17 H 0.093 0.907 18 C -0.194 4.194 19 N -0.552 5.552 20 Si 0.739 3.261 21 H -0.212 1.212 22 H -0.213 1.213 23 H -0.204 1.204 24 C 0.000 4.000 25 C -0.010 4.010 26 N -0.046 5.046 27 C -0.050 4.050 28 N -0.116 5.116 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.177 0.823 33 H 0.238 0.762 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.193 0.807 37 H 0.072 0.928 38 H 0.139 0.861 39 H 0.070 0.930 40 H 0.054 0.946 41 H 0.103 0.897 42 H 0.098 0.902 43 H 0.094 0.906 44 H 0.102 0.898 45 H 0.126 0.874 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.057 -4.652 -10.522 13.497 hybrid contribution 0.546 0.340 0.819 1.042 sum -6.511 -4.311 -9.703 12.455 Atomic orbital electron populations 1.20070 0.86522 1.02984 1.02796 1.21975 0.97055 0.88858 1.05725 1.22110 0.90357 1.00273 1.08903 1.21481 0.95904 0.85248 1.13008 1.16868 0.86376 0.82358 0.77021 1.90780 1.29723 1.70831 1.51083 1.45912 1.11900 1.04931 1.72283 1.19368 0.85120 0.84543 1.02057 1.19373 1.22663 0.96368 0.91993 1.23678 0.99576 0.90289 0.99378 1.77178 1.25361 1.22820 0.88425 1.48505 1.53452 1.07795 1.04149 1.22656 0.93957 0.84846 0.99468 1.20112 1.03894 0.88825 0.77261 1.44244 1.44191 1.18407 1.25243 1.19207 1.23269 0.93132 1.03238 0.90670 1.24974 1.00305 0.95259 0.98812 1.69893 1.42511 0.96907 1.45856 0.86174 0.81613 0.77349 0.80921 1.21185 1.21267 1.20408 1.21267 0.93174 0.92702 0.92810 1.22551 1.01395 0.88835 0.88251 1.45502 1.05049 1.04418 1.49600 1.22283 0.85624 0.92334 1.04765 1.73102 0.89517 1.27911 1.21081 0.90809 0.91191 0.90586 0.82288 0.76227 0.90355 0.91033 0.80722 0.92777 0.86129 0.93021 0.94553 0.89743 0.90159 0.90572 0.89798 0.87421 0.88967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 10.45 36.00 0.38 -0.20 16 2 C 0.02 0.25 7.22 -82.47 -0.60 -0.34 16 3 C -0.19 -2.39 10.44 -38.98 -0.41 -2.79 16 4 C -0.03 -0.40 6.96 -82.06 -0.57 -0.97 16 5 C 0.59 9.18 7.79 -12.64 -0.10 9.08 16 6 O -0.55 -9.67 14.88 5.25 0.08 -9.59 16 7 N -0.70 -10.10 5.53 -62.65 -0.35 -10.45 16 8 C 0.21 3.27 5.96 -5.20 -0.03 3.24 16 9 C -0.29 -4.87 5.46 -105.21 -0.57 -5.44 16 10 C 0.06 0.91 11.97 -17.21 -0.21 0.70 16 11 N -0.32 -5.71 12.61 30.70 0.39 -5.32 16 12 N -0.36 -6.68 4.03 -56.93 -0.23 -6.91 16 13 C 0.12 2.36 6.71 -82.16 -0.55 1.81 16 14 C 0.23 4.98 5.16 -4.48 -0.02 4.96 16 15 N -0.60 -13.65 3.03 -172.96 -0.52 -14.17 16 16 C -0.26 -6.54 9.72 -15.06 -0.15 -6.69 16 17 H 0.08 1.83 7.86 -52.49 -0.41 1.42 16 18 C 0.00 0.13 5.08 -17.43 -0.09 0.04 16 19 N -0.91 -24.38 10.69 55.49 0.59 -23.78 16 20 Si 0.91 20.61 29.58 -169.99 -5.03 15.58 16 21 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 24 C 0.13 2.34 6.49 -3.59 -0.02 2.32 16 25 C 0.11 1.88 7.44 -3.88 -0.03 1.85 16 26 N -0.26 -3.65 3.75 -63.88 -0.24 -3.88 16 27 C 0.09 1.00 10.61 59.85 0.64 1.63 16 28 N -0.28 -3.99 11.90 33.64 0.40 -3.59 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.16 1.63 7.61 -52.49 -0.40 1.23 16 33 H 0.40 5.30 7.53 -40.82 -0.31 5.00 16 34 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.18 2.11 8.06 -52.49 -0.42 1.69 16 37 H 0.05 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.12 3.02 6.11 -51.93 -0.32 2.71 16 39 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 40 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.08 1.41 7.93 -51.92 -0.41 0.99 16 42 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.11 1.30 6.73 -51.93 -0.35 0.95 16 46 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 384.48 15.07 5.79 5.79 Total: -1.00 -31.51 384.48 -7.85 -39.37 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -6.41 Total: 7.77 kcal Atomic # 6 Polarization: 11.52 SS G_CDS: -2.33 Total: 9.19 kcal Atomic # 7 Polarization: -68.16 SS G_CDS: 0.04 Total: -68.11 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.08 Total: -9.59 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.03 Total: 15.58 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.51 -7.85 -39.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069854492.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.339 kcal (2) G-P(sol) polarization free energy of solvation -31.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds