Wall clock time and date at job start Wed Apr 1 2020 03:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39675 * 126.06841 * 2 1 4 4 C 1.38405 * 105.35938 * 179.84707 * 3 2 1 5 5 C 1.47160 * 126.88613 * 180.10383 * 4 3 2 6 6 O 1.21626 * 119.99963 * 184.67008 * 5 4 3 7 7 N 1.34781 * 119.99635 * 4.66362 * 5 4 3 8 8 C 1.46501 * 119.99753 * 184.46226 * 7 5 4 9 9 C 1.50693 * 109.47124 * 180.02562 * 8 7 5 10 10 C 1.40070 * 126.12792 * 259.69401 * 9 8 7 11 11 N 1.31018 * 108.25561 * 179.85345 * 10 9 8 12 12 N 1.39747 * 108.17517 * 0.60198 * 11 10 9 13 13 C 1.34653 * 126.12203 * 80.00098 * 9 8 7 14 14 C 1.51033 * 127.90995 * 359.65423 * 13 9 8 15 15 N 1.47505 * 106.99942 * 169.52657 * 14 13 9 16 16 C 1.36932 * 121.01282 * 222.90060 * 15 14 13 17 17 H 1.07997 * 120.00084 * 159.63009 * 16 15 14 18 18 C 1.38811 * 119.99910 * 339.63457 * 16 15 14 19 19 N 1.31620 * 120.00188 * 346.12102 * 18 16 15 20 20 Si 1.86801 * 120.00195 * 166.12245 * 18 16 15 21 21 H 1.48507 * 109.47025 * 89.99795 * 20 18 16 22 22 H 1.48503 * 109.47606 * 209.99556 * 20 18 16 23 23 H 1.48500 * 109.47217 * 330.00275 * 20 18 16 24 24 C 1.47084 * 117.97366 * 42.92515 * 15 14 13 25 25 C 1.46551 * 127.32000 * 179.18605 * 12 11 10 26 26 N 1.36599 * 106.23044 * 0.40798 * 4 3 2 27 27 C 1.46507 * 125.19132 * 179.73396 * 26 4 3 28 28 N 1.28439 * 109.62397 * 359.72939 * 26 4 3 29 29 H 1.08997 * 109.47266 * 269.71316 * 1 2 3 30 30 H 1.09007 * 109.47079 * 149.71770 * 1 2 3 31 31 H 1.08997 * 109.47341 * 29.72047 * 1 2 3 32 32 H 1.07995 * 127.31981 * 359.96506 * 3 2 1 33 33 H 0.96996 * 120.00440 * 4.46827 * 7 5 4 34 34 H 1.08999 * 109.47228 * 300.00532 * 8 7 5 35 35 H 1.09004 * 109.47107 * 60.00426 * 8 7 5 36 36 H 1.08001 * 125.87347 * 0.03985 * 10 9 8 37 37 H 1.09001 * 109.94932 * 288.89844 * 14 13 9 38 38 H 1.09001 * 109.94920 * 50.15744 * 14 13 9 39 39 H 0.97003 * 120.00229 * 180.02562 * 19 18 16 40 40 H 1.08999 * 109.51902 * 56.34273 * 24 15 14 41 41 H 1.09008 * 109.50963 * 176.49963 * 24 15 14 42 42 H 1.09002 * 109.51078 * 41.60253 * 25 12 11 43 43 H 1.09000 * 109.51141 * 281.45375 * 25 12 11 44 44 H 1.08990 * 109.47090 * 275.33245 * 27 26 4 45 45 H 1.09000 * 109.46588 * 35.32935 * 27 26 4 46 46 H 1.08997 * 109.46939 * 155.32612 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3293 1.1290 0.0000 4 6 3.6239 0.6396 0.0036 5 6 4.8664 1.4282 0.0071 6 8 5.9426 0.8678 -0.0757 7 7 4.8115 2.7716 0.1021 8 6 6.0405 3.5633 0.0074 9 6 5.7072 5.0265 0.1441 10 6 5.5885 5.9479 -0.9042 11 7 5.2868 7.1156 -0.3921 12 7 5.2177 6.9777 0.9968 13 6 5.4758 5.6837 1.2964 14 6 5.4862 5.1270 2.7003 15 7 5.4296 6.2780 3.6211 16 6 6.2169 6.3255 4.7404 17 1 6.4191 7.2725 5.2186 18 6 6.7553 5.1565 5.2604 19 7 6.3021 3.9877 4.8589 20 14 8.1228 5.2419 6.5300 21 1 7.5321 5.2818 7.8919 22 1 8.9922 4.0447 6.4025 23 1 8.9313 6.4670 6.3051 24 6 4.5012 7.3729 3.3005 25 6 4.9264 8.0245 1.9801 26 7 3.5173 -0.7222 -0.0039 27 6 4.6450 -1.6574 -0.0089 28 7 2.2775 -1.0578 -0.0057 29 1 -0.3633 -0.0051 1.0276 30 1 -0.3633 -0.8875 -0.5182 31 1 -0.3634 0.8924 -0.5095 32 1 2.0206 2.1639 -0.0005 33 1 3.9584 3.2141 0.2331 34 1 6.7237 3.2706 0.8047 35 1 6.5130 3.3867 -0.9590 36 1 5.7198 5.7323 -1.9543 37 1 4.6179 4.4859 2.8526 38 1 6.4021 4.5606 2.8690 39 1 6.6781 3.1708 5.2225 40 1 3.4907 6.9764 3.2020 41 1 4.5256 8.1160 4.0977 42 1 4.1196 8.6573 1.6101 43 1 5.8185 8.6291 2.1434 44 1 4.9857 -1.8102 -1.0329 45 1 5.4598 -1.2472 0.5877 46 1 4.3286 -2.6105 0.4149 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001069854492.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:25 Heat of formation + Delta-G solvation = 128.082135 kcal Electronic energy + Delta-G solvation = -30186.075097 eV Core-core repulsion = 26114.272172 eV Total energy + Delta-G solvation = -4071.802925 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.54761 -42.41127 -40.34185 -37.97611 -36.30504 -34.97216 -34.61831 -33.10835 -32.08112 -31.75700 -30.54220 -30.08943 -27.84908 -26.60982 -26.31507 -25.14987 -24.00161 -23.25921 -21.97656 -21.61180 -20.67418 -19.86791 -18.80054 -18.55957 -17.60967 -17.39846 -17.34169 -16.74095 -16.62661 -16.26155 -15.93740 -15.49773 -15.37022 -15.09843 -14.91641 -14.79521 -14.67375 -14.32564 -14.11244 -14.06326 -13.90900 -13.32514 -13.27740 -13.22142 -13.13603 -13.07866 -12.93972 -12.73896 -12.61216 -12.33054 -12.01037 -11.90919 -11.70619 -11.61789 -11.26474 -10.79744 -10.33703 -10.04166 -9.97814 -9.82321 -9.39367 -8.98759 -7.97065 -5.39311 0.20714 0.93261 1.34582 1.45543 1.48778 1.54180 1.55880 1.62771 1.73899 2.15337 2.44153 2.46564 3.21800 3.43806 3.51516 3.56053 3.62439 3.85058 4.04168 4.15954 4.20471 4.25327 4.28740 4.31057 4.38889 4.42066 4.48122 4.61636 4.65954 4.75707 4.79561 4.89560 4.91053 4.94671 5.02520 5.05917 5.14032 5.25394 5.34126 5.42824 5.56566 5.58168 5.76110 5.77629 6.11032 6.19564 6.42801 6.82196 6.99956 7.00443 7.09691 7.66714 8.15437 9.11052 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.009631 B = 0.003416 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2906.671149 B = 8194.843388 C = 9419.272349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.013 3.987 3 C -0.182 4.182 4 C -0.052 4.052 5 C 0.589 3.411 6 O -0.573 6.573 7 N -0.691 5.691 8 C 0.219 3.781 9 C -0.277 4.277 10 C 0.069 3.931 11 N -0.327 5.327 12 N -0.367 5.367 13 C 0.098 3.902 14 C 0.244 3.756 15 N -0.618 5.618 16 C -0.263 4.263 17 H 0.082 0.918 18 C -0.046 4.046 19 N -0.934 5.934 20 Si 0.966 3.034 21 H -0.283 1.283 22 H -0.297 1.297 23 H -0.271 1.271 24 C 0.128 3.872 25 C 0.117 3.883 26 N -0.269 5.269 27 C 0.087 3.913 28 N -0.298 5.298 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.183 0.817 33 H 0.410 0.590 34 H 0.049 0.951 35 H 0.092 0.908 36 H 0.216 0.784 37 H 0.032 0.968 38 H 0.084 0.916 39 H 0.251 0.749 40 H 0.042 0.958 41 H 0.099 0.901 42 H 0.113 0.887 43 H 0.076 0.924 44 H 0.096 0.904 45 H 0.093 0.907 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.926 -2.931 -11.794 15.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.143 4.143 3 C -0.211 4.211 4 C -0.180 4.180 5 C 0.375 3.625 6 O -0.454 6.454 7 N -0.342 5.342 8 C 0.096 3.904 9 C -0.289 4.289 10 C -0.117 4.117 11 N -0.147 5.147 12 N -0.148 5.148 13 C -0.033 4.033 14 C 0.117 3.883 15 N -0.341 5.341 16 C -0.392 4.392 17 H 0.100 0.900 18 C -0.241 4.241 19 N -0.581 5.581 20 Si 0.795 3.205 21 H -0.209 1.209 22 H -0.223 1.223 23 H -0.196 1.196 24 C 0.001 3.999 25 C -0.006 4.006 26 N -0.056 5.056 27 C -0.053 4.053 28 N -0.133 5.133 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.115 0.885 32 H 0.200 0.800 33 H 0.246 0.754 34 H 0.068 0.932 35 H 0.110 0.890 36 H 0.233 0.767 37 H 0.050 0.950 38 H 0.102 0.898 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.117 0.883 42 H 0.131 0.869 43 H 0.094 0.906 44 H 0.114 0.886 45 H 0.111 0.889 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -8.263 -3.314 -11.932 14.887 hybrid contribution 0.856 -0.033 1.211 1.483 sum -7.407 -3.347 -10.722 13.454 Atomic orbital electron populations 1.20219 0.83894 1.04400 1.03698 1.22649 0.98733 0.88335 1.04611 1.22477 0.89596 1.01532 1.07525 1.21485 0.95993 0.85761 1.14796 1.17046 0.86517 0.82525 0.76431 1.90760 1.30820 1.71326 1.52460 1.45766 1.11891 1.04657 1.71876 1.19251 0.85130 0.84049 1.02020 1.19480 1.21024 0.96777 0.91646 1.24264 0.97724 0.88913 1.00805 1.77176 1.25905 1.23773 0.87840 1.48687 1.53756 1.07614 1.04786 1.22269 0.96483 0.85975 0.98586 1.19522 1.01126 0.88472 0.79174 1.44482 1.45215 1.19518 1.24917 1.19560 1.22991 0.93236 1.03431 0.89988 1.25643 1.02387 0.95172 1.00916 1.70064 1.43681 0.97099 1.47221 0.85287 0.79280 0.76925 0.79030 1.20940 1.22343 1.19581 1.21440 0.92424 0.91709 0.94330 1.22533 1.02494 0.88442 0.87116 1.45773 1.05534 1.04591 1.49704 1.22401 0.84794 0.92627 1.05449 1.73101 0.89721 1.28787 1.21651 0.90043 0.90525 0.88470 0.80021 0.75373 0.93239 0.88988 0.76739 0.95031 0.89778 0.93956 0.94022 0.88253 0.86939 0.90592 0.88597 0.88884 0.87017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.98 10.45 71.24 0.74 -0.24 16 2 C 0.01 0.30 7.22 43.05 0.31 0.62 16 3 C -0.18 -4.42 10.44 22.66 0.24 -4.19 16 4 C -0.05 -1.50 6.96 40.79 0.28 -1.21 16 5 C 0.59 18.57 7.79 86.59 0.67 19.24 16 6 O -0.57 -20.87 14.88 -4.11 -0.06 -20.93 16 7 N -0.69 -19.85 5.53 -470.37 -2.60 -22.46 16 8 C 0.22 6.71 5.96 85.63 0.51 7.22 16 9 C -0.28 -8.92 5.46 -20.24 -0.11 -9.03 16 10 C 0.07 1.98 11.97 85.26 1.02 3.00 16 11 N -0.33 -10.84 12.61 -56.79 -0.72 -11.56 16 12 N -0.37 -13.07 4.03 -334.03 -1.35 -14.42 16 13 C 0.10 3.75 6.71 41.31 0.28 4.03 16 14 C 0.24 11.11 5.16 85.55 0.44 11.55 16 15 N -0.62 -28.39 3.03 -701.13 -2.12 -30.52 16 16 C -0.26 -13.32 9.72 84.03 0.82 -12.50 16 17 H 0.08 3.94 7.86 -2.91 -0.02 3.92 16 18 C -0.05 -2.42 5.08 84.86 0.43 -1.98 16 19 N -0.93 -52.19 10.69 21.65 0.23 -51.96 16 20 Si 0.97 43.07 29.58 68.60 2.03 45.10 16 21 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 22 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16 23 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 24 C 0.13 4.49 6.49 86.35 0.56 5.05 16 25 C 0.12 3.63 7.44 86.46 0.64 4.27 16 26 N -0.27 -7.55 3.75 -356.02 -1.33 -8.89 16 27 C 0.09 1.94 10.61 127.77 1.36 3.30 16 28 N -0.30 -8.24 11.90 -47.49 -0.57 -8.80 16 29 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.08 1.08 8.14 -2.38 -0.02 1.07 16 31 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.18 3.35 7.61 -2.91 -0.02 3.33 16 33 H 0.41 10.52 7.53 -92.71 -0.70 9.82 16 34 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.09 2.45 8.14 -2.38 -0.02 2.43 16 36 H 0.22 4.22 8.06 -2.91 -0.02 4.20 16 37 H 0.03 1.54 8.14 -2.39 -0.02 1.53 16 38 H 0.08 4.45 6.11 -2.39 -0.01 4.43 16 39 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 40 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.10 3.14 7.93 -2.38 -0.02 3.12 16 42 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 43 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 44 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.09 2.36 6.73 -2.39 -0.02 2.34 16 46 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -69.15 384.48 2.03 -67.12 By element: Atomic # 1 Polarization: 27.86 SS G_CDS: 0.32 Total: 28.18 kcal Atomic # 6 Polarization: 20.92 SS G_CDS: 8.20 Total: 29.12 kcal Atomic # 7 Polarization: -140.14 SS G_CDS: -8.45 Total: -148.59 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.06 Total: -20.93 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -69.15 2.03 -67.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069854492.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.202 kcal (2) G-P(sol) polarization free energy of solvation -69.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds