Wall clock time and date at job start Wed Apr 1 2020 03:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.35034 * 126.38572 * 2 1 4 4 H 0.97000 * 124.88488 * 0.05267 * 3 2 1 5 5 N 1.28474 * 110.23033 * 180.02562 * 3 2 1 6 6 C 1.31816 * 110.07144 * 359.73533 * 5 3 2 7 7 C 1.47705 * 126.51789 * 180.25499 * 6 5 3 8 8 O 1.21574 * 120.00150 * 180.17702 * 7 6 5 9 9 N 1.34775 * 120.00013 * 0.18119 * 7 6 5 10 10 C 1.46502 * 120.00103 * 179.97438 * 9 7 6 11 11 C 1.50700 * 109.47083 * 180.02562 * 10 9 7 12 12 C 1.40075 * 126.12638 * 259.68871 * 11 10 9 13 13 N 1.31005 * 108.25640 * 179.97438 * 12 11 10 14 14 N 1.39745 * 108.17815 * 0.52689 * 13 12 11 15 15 C 1.34641 * 126.13029 * 80.00204 * 11 10 9 16 16 C 1.51043 * 127.90586 * 359.44623 * 15 11 10 17 17 N 1.47496 * 106.99990 * 169.57225 * 16 15 11 18 18 C 1.36933 * 121.00872 * 222.97274 * 17 16 15 19 19 H 1.08010 * 120.00034 * 155.89979 * 18 17 16 20 20 C 1.38813 * 120.00367 * 335.90205 * 18 17 16 21 21 N 1.31623 * 119.99620 * 344.42246 * 20 18 17 22 22 Si 1.86796 * 120.00132 * 164.42492 * 20 18 17 23 23 H 1.48504 * 109.47201 * 94.43541 * 22 20 18 24 24 H 1.48506 * 109.47163 * 214.43397 * 22 20 18 25 25 H 1.48496 * 109.47522 * 334.43041 * 22 20 18 26 26 C 1.47082 * 117.97918 * 42.97006 * 17 16 15 27 27 C 1.46550 * 127.32722 * 179.23325 * 14 13 12 28 28 C 1.35365 * 126.38455 * 180.02562 * 2 1 3 29 29 C 1.50700 * 127.24675 * 359.95079 * 28 2 1 30 30 H 1.09002 * 109.46970 * 269.97557 * 1 2 3 31 31 H 1.08992 * 109.46820 * 29.97358 * 1 2 3 32 32 H 1.08994 * 109.47116 * 149.97822 * 1 2 3 33 33 H 0.97007 * 120.00246 * 0.02562 * 9 7 6 34 34 H 1.09003 * 109.46980 * 299.99902 * 10 9 7 35 35 H 1.08997 * 109.46889 * 60.00204 * 10 9 7 36 36 H 1.08002 * 125.86959 * 0.08895 * 12 11 10 37 37 H 1.09009 * 109.94766 * 288.93791 * 16 15 11 38 38 H 1.08999 * 109.95070 * 50.18905 * 16 15 11 39 39 H 0.96996 * 119.99435 * 180.02562 * 21 20 18 40 40 H 1.08997 * 109.51155 * 176.52771 * 26 17 16 41 41 H 1.08994 * 109.51233 * 56.37046 * 26 17 16 42 42 H 1.08999 * 109.50936 * 281.40445 * 27 14 13 43 43 H 1.09000 * 109.50739 * 41.53914 * 27 14 13 44 44 H 1.09004 * 109.47073 * 90.00856 * 29 28 2 45 45 H 1.08996 * 109.47900 * 330.00398 * 29 28 2 46 46 H 1.09005 * 109.47388 * 210.00015 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3081 1.0871 0.0000 4 1 1.9966 2.0057 0.0007 5 7 3.5421 0.7296 -0.0005 6 6 3.6321 -0.5855 0.0048 7 6 4.8764 -1.3813 0.0114 8 8 4.8213 -2.5957 0.0126 9 7 6.0730 -0.7610 0.0160 10 6 7.3072 -1.5503 0.0231 11 6 8.4958 -0.6240 0.0278 12 6 9.2772 -0.2775 -1.0819 13 7 10.2141 0.5466 -0.6829 14 7 10.0667 0.7410 0.6931 15 6 9.0006 0.0142 1.1005 16 6 8.5040 -0.0316 2.5262 17 7 9.5292 0.6222 3.3611 18 6 9.9061 0.0868 4.5638 19 1 10.8780 0.3153 4.9758 20 6 9.0392 -0.7497 5.2534 21 7 7.7648 -0.7903 4.9267 22 14 9.6812 -1.8177 6.6451 23 1 9.4859 -1.1151 7.9387 24 1 8.9402 -3.1045 6.6639 25 1 11.1277 -2.0826 6.4390 26 6 10.1343 1.8667 2.8627 27 6 10.8999 1.5709 1.5676 28 6 2.3100 -1.0898 -0.0005 29 6 1.8853 -2.5357 -0.0001 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8902 -0.5134 32 1 -0.3633 -0.8897 -0.5141 33 1 6.1170 0.2080 0.0154 34 1 7.3322 -2.1775 0.9142 35 1 7.3406 -2.1803 -0.8658 36 1 9.1311 -0.6279 -2.0930 37 1 7.5593 0.5061 2.6084 38 1 8.3724 -1.0667 2.8412 39 1 7.1590 -1.3746 5.4089 40 1 10.8227 2.2615 3.6099 41 1 9.3512 2.5986 2.6652 42 1 11.8229 1.0404 1.8016 43 1 11.1358 2.5081 1.0636 44 1 1.7824 -2.8844 -1.0277 45 1 0.9294 -2.6336 0.5143 46 1 2.6372 -3.1351 0.5133 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001069854944.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:38 Heat of formation + Delta-G solvation = 135.921723 kcal Electronic energy + Delta-G solvation = -30086.690401 eV Core-core repulsion = 26015.227427 eV Total energy + Delta-G solvation = -4071.462975 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.72752 -40.93239 -38.90491 -36.26939 -34.75294 -33.55060 -32.94918 -32.50090 -31.18269 -30.17872 -29.04750 -28.23319 -26.17519 -26.10654 -25.11847 -23.63262 -23.03006 -21.70259 -20.17183 -19.96922 -19.76423 -18.35241 -17.64045 -16.88877 -16.68553 -16.01832 -15.89896 -15.53039 -15.07871 -14.72069 -14.42216 -14.00080 -13.86436 -13.69503 -13.55332 -13.30122 -13.22622 -13.12525 -12.95812 -12.84639 -12.48719 -12.44346 -12.39404 -11.99589 -11.66043 -11.56420 -11.26827 -10.94876 -10.85562 -10.76263 -10.69327 -10.17131 -10.14685 -10.05645 -9.79762 -9.32919 -8.87362 -8.73151 -8.61115 -8.50491 -7.88117 -7.04675 -5.97949 -3.40791 1.65920 2.04430 2.47093 2.77027 3.01130 3.07070 3.30715 3.39170 3.40733 3.65669 3.82184 4.34388 4.52368 4.54682 4.80511 4.99985 5.10092 5.19451 5.21902 5.24650 5.34001 5.42377 5.53202 5.58803 5.61066 5.65101 5.67976 5.76182 5.82613 5.91101 5.97598 6.17916 6.19036 6.25557 6.42116 6.45483 6.54104 6.60054 6.79029 6.93490 6.96707 7.13790 7.20130 7.60666 7.64777 7.72387 8.00641 8.12743 8.28233 8.53842 8.95176 9.57760 10.10634 11.12845 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.009895 B = 0.003364 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2829.141164 B = 8321.891493 C = 9769.265014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.002 3.998 3 N -0.382 5.382 4 H 0.443 0.557 5 N -0.255 5.255 6 C -0.004 4.004 7 C 0.601 3.399 8 O -0.536 6.536 9 N -0.705 5.705 10 C 0.210 3.790 11 C -0.288 4.288 12 C 0.057 3.943 13 N -0.319 5.319 14 N -0.358 5.358 15 C 0.121 3.879 16 C 0.231 3.769 17 N -0.596 5.596 18 C -0.264 4.264 19 H 0.073 0.927 20 C 0.009 3.991 21 N -0.902 5.902 22 Si 0.908 3.092 23 H -0.286 1.286 24 H -0.286 1.286 25 H -0.278 1.278 26 C 0.129 3.871 27 C 0.114 3.886 28 C -0.145 4.145 29 C -0.078 4.078 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.405 0.595 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.176 0.824 37 H 0.057 0.943 38 H 0.109 0.891 39 H 0.259 0.741 40 H 0.084 0.916 41 H 0.036 0.964 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.065 0.935 45 H 0.059 0.941 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.892 3.738 -11.016 16.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.123 4.123 3 N -0.096 5.096 4 H 0.287 0.713 5 N -0.091 5.091 6 C -0.165 4.165 7 C 0.385 3.615 8 O -0.412 6.412 9 N -0.355 5.355 10 C 0.086 3.914 11 C -0.300 4.300 12 C -0.130 4.130 13 N -0.139 5.139 14 N -0.139 5.139 15 C -0.011 4.011 16 C 0.104 3.896 17 N -0.319 5.319 18 C -0.393 4.393 19 H 0.091 0.909 20 C -0.191 4.191 21 N -0.545 5.545 22 Si 0.737 3.263 23 H -0.213 1.213 24 H -0.212 1.212 25 H -0.203 1.203 26 C 0.000 4.000 27 C -0.010 4.010 28 C -0.155 4.155 29 C -0.136 4.136 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.104 0.896 33 H 0.240 0.760 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.193 0.807 37 H 0.075 0.925 38 H 0.127 0.873 39 H 0.069 0.931 40 H 0.102 0.898 41 H 0.054 0.946 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.213 4.477 -11.173 15.785 hybrid contribution -0.902 -0.499 0.910 1.375 sum -11.114 3.978 -10.263 15.642 Atomic orbital electron populations 1.20311 0.86735 1.03688 1.03263 1.21179 0.95129 0.87018 1.08997 1.43165 1.03015 1.09343 1.54089 0.71279 1.73575 1.01457 1.15077 1.18988 1.21935 0.95077 0.89572 1.09931 1.16838 0.81611 0.86388 0.76648 1.90751 1.86739 1.12776 1.50918 1.46071 1.05012 1.11011 1.73421 1.19354 0.78690 0.91041 1.02268 1.19415 1.05289 1.12423 0.92884 1.23669 0.93654 0.96520 0.99113 1.77155 1.24167 1.21820 0.90731 1.48481 1.23571 1.36704 1.05179 1.22572 0.88059 0.91290 0.99158 1.19924 0.90385 1.01016 0.78266 1.44201 1.45614 1.22195 1.19886 1.19150 0.98325 1.25942 0.95890 0.90914 1.25039 0.94749 1.01128 0.98176 1.69953 1.01840 1.39797 1.42925 0.86207 0.78368 0.80116 0.81640 1.21264 1.21228 1.20319 1.21283 0.96502 0.89939 0.92232 1.22552 0.94155 0.93400 0.90856 1.20110 0.90700 0.96615 1.08054 1.20180 1.01392 0.89868 1.02129 0.90380 0.91280 0.89634 0.76002 0.90620 0.91097 0.80738 0.92548 0.87285 0.93060 0.89770 0.94624 0.90598 0.90261 0.91647 0.92196 0.89618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.14 36.01 0.37 -0.12 16 2 C 0.00 0.02 7.23 -82.21 -0.59 -0.57 16 3 N -0.38 -3.98 6.83 33.50 0.23 -3.75 16 4 H 0.44 2.88 8.96 -190.44 -1.71 1.17 16 5 N -0.26 -3.61 11.92 33.42 0.40 -3.21 16 6 C 0.00 -0.06 7.13 -82.76 -0.59 -0.65 16 7 C 0.60 10.48 7.82 -12.39 -0.10 10.38 16 8 O -0.54 -10.38 15.11 5.30 0.08 -10.30 16 9 N -0.70 -11.69 5.55 -62.47 -0.35 -12.04 16 10 C 0.21 3.56 5.95 -5.19 -0.03 3.53 16 11 C -0.29 -5.20 5.46 -105.21 -0.57 -5.78 16 12 C 0.06 0.97 11.97 -17.22 -0.21 0.76 16 13 N -0.32 -6.05 12.61 30.70 0.39 -5.67 16 14 N -0.36 -7.07 4.03 -56.90 -0.23 -7.30 16 15 C 0.12 2.47 6.71 -82.17 -0.55 1.92 16 16 C 0.23 5.35 5.11 -4.48 -0.02 5.33 16 17 N -0.60 -14.16 3.01 -172.93 -0.52 -14.68 16 18 C -0.26 -6.85 9.66 -15.06 -0.15 -7.00 16 19 H 0.07 1.83 7.88 -52.48 -0.41 1.41 16 20 C 0.01 0.23 5.00 -17.43 -0.09 0.14 16 21 N -0.90 -24.98 11.07 55.49 0.61 -24.37 16 22 Si 0.91 21.04 29.58 -169.99 -5.03 16.01 16 23 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 26 C 0.13 2.47 6.50 -3.56 -0.02 2.44 16 27 C 0.11 1.99 7.45 -3.85 -0.03 1.96 16 28 C -0.14 -1.93 6.25 -104.40 -0.65 -2.58 16 29 C -0.08 -0.91 9.61 36.01 0.35 -0.57 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.08 0.45 7.98 -51.93 -0.41 0.03 16 33 H 0.41 6.57 8.19 -40.82 -0.33 6.24 16 34 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.18 2.32 8.06 -52.49 -0.42 1.89 16 37 H 0.06 1.39 8.14 -51.92 -0.42 0.97 16 38 H 0.11 2.83 6.46 -51.93 -0.34 2.50 16 39 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 40 H 0.08 1.48 7.94 -51.93 -0.41 1.06 16 41 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 43 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.06 0.55 8.00 -51.93 -0.42 0.13 16 46 H 0.09 1.21 6.70 -51.93 -0.35 0.86 16 LS Contribution 384.79 15.07 5.80 5.80 Total: -1.00 -32.89 384.79 -9.25 -42.14 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -7.74 Total: 8.16 kcal Atomic # 6 Polarization: 12.10 SS G_CDS: -2.89 Total: 9.21 kcal Atomic # 7 Polarization: -71.54 SS G_CDS: 0.53 Total: -71.01 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.08 Total: -10.30 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.01 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.89 -9.25 -42.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069854944.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.060 kcal (2) G-P(sol) polarization free energy of solvation -32.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds