Wall clock time and date at job start Wed Apr 1 2020 03:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.35034 * 126.38572 * 2 1 4 4 H 0.97000 * 124.88488 * 0.05267 * 3 2 1 5 5 N 1.28474 * 110.23033 * 180.02562 * 3 2 1 6 6 C 1.31816 * 110.07144 * 359.73533 * 5 3 2 7 7 C 1.47705 * 126.51789 * 180.25499 * 6 5 3 8 8 O 1.21574 * 120.00150 * 180.17702 * 7 6 5 9 9 N 1.34775 * 120.00013 * 0.18119 * 7 6 5 10 10 C 1.46502 * 120.00103 * 179.97438 * 9 7 6 11 11 C 1.50700 * 109.47083 * 180.02562 * 10 9 7 12 12 C 1.40075 * 126.12638 * 259.68871 * 11 10 9 13 13 N 1.31005 * 108.25640 * 179.97438 * 12 11 10 14 14 N 1.39745 * 108.17815 * 0.52689 * 13 12 11 15 15 C 1.34641 * 126.13029 * 80.00204 * 11 10 9 16 16 C 1.51043 * 127.90586 * 359.44623 * 15 11 10 17 17 N 1.47496 * 106.99990 * 169.57225 * 16 15 11 18 18 C 1.36933 * 121.00872 * 222.97274 * 17 16 15 19 19 H 1.08010 * 120.00034 * 155.89979 * 18 17 16 20 20 C 1.38813 * 120.00367 * 335.90205 * 18 17 16 21 21 N 1.31623 * 119.99620 * 344.42246 * 20 18 17 22 22 Si 1.86796 * 120.00132 * 164.42492 * 20 18 17 23 23 H 1.48504 * 109.47201 * 94.43541 * 22 20 18 24 24 H 1.48506 * 109.47163 * 214.43397 * 22 20 18 25 25 H 1.48496 * 109.47522 * 334.43041 * 22 20 18 26 26 C 1.47082 * 117.97918 * 42.97006 * 17 16 15 27 27 C 1.46550 * 127.32722 * 179.23325 * 14 13 12 28 28 C 1.35365 * 126.38455 * 180.02562 * 2 1 3 29 29 C 1.50700 * 127.24675 * 359.95079 * 28 2 1 30 30 H 1.09002 * 109.46970 * 269.97557 * 1 2 3 31 31 H 1.08992 * 109.46820 * 29.97358 * 1 2 3 32 32 H 1.08994 * 109.47116 * 149.97822 * 1 2 3 33 33 H 0.97007 * 120.00246 * 0.02562 * 9 7 6 34 34 H 1.09003 * 109.46980 * 299.99902 * 10 9 7 35 35 H 1.08997 * 109.46889 * 60.00204 * 10 9 7 36 36 H 1.08002 * 125.86959 * 0.08895 * 12 11 10 37 37 H 1.09009 * 109.94766 * 288.93791 * 16 15 11 38 38 H 1.08999 * 109.95070 * 50.18905 * 16 15 11 39 39 H 0.96996 * 119.99435 * 180.02562 * 21 20 18 40 40 H 1.08997 * 109.51155 * 176.52771 * 26 17 16 41 41 H 1.08994 * 109.51233 * 56.37046 * 26 17 16 42 42 H 1.08999 * 109.50936 * 281.40445 * 27 14 13 43 43 H 1.09000 * 109.50739 * 41.53914 * 27 14 13 44 44 H 1.09004 * 109.47073 * 90.00856 * 29 28 2 45 45 H 1.08996 * 109.47900 * 330.00398 * 29 28 2 46 46 H 1.09005 * 109.47388 * 210.00015 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3081 1.0871 0.0000 4 1 1.9966 2.0057 0.0007 5 7 3.5421 0.7296 -0.0005 6 6 3.6321 -0.5855 0.0048 7 6 4.8764 -1.3813 0.0114 8 8 4.8213 -2.5957 0.0126 9 7 6.0730 -0.7610 0.0160 10 6 7.3072 -1.5503 0.0231 11 6 8.4958 -0.6240 0.0278 12 6 9.2772 -0.2775 -1.0819 13 7 10.2141 0.5466 -0.6829 14 7 10.0667 0.7410 0.6931 15 6 9.0006 0.0142 1.1005 16 6 8.5040 -0.0316 2.5262 17 7 9.5292 0.6222 3.3611 18 6 9.9061 0.0868 4.5638 19 1 10.8780 0.3153 4.9758 20 6 9.0392 -0.7497 5.2534 21 7 7.7648 -0.7903 4.9267 22 14 9.6812 -1.8177 6.6451 23 1 9.4859 -1.1151 7.9387 24 1 8.9402 -3.1045 6.6639 25 1 11.1277 -2.0826 6.4390 26 6 10.1343 1.8667 2.8627 27 6 10.8999 1.5709 1.5676 28 6 2.3100 -1.0898 -0.0005 29 6 1.8853 -2.5357 -0.0001 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8902 -0.5134 32 1 -0.3633 -0.8897 -0.5141 33 1 6.1170 0.2080 0.0154 34 1 7.3322 -2.1775 0.9142 35 1 7.3406 -2.1803 -0.8658 36 1 9.1311 -0.6279 -2.0930 37 1 7.5593 0.5061 2.6084 38 1 8.3724 -1.0667 2.8412 39 1 7.1590 -1.3746 5.4089 40 1 10.8227 2.2615 3.6099 41 1 9.3512 2.5986 2.6652 42 1 11.8229 1.0404 1.8016 43 1 11.1358 2.5081 1.0636 44 1 1.7824 -2.8844 -1.0277 45 1 0.9294 -2.6336 0.5143 46 1 2.6372 -3.1351 0.5133 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001069854944.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:37 Heat of formation + Delta-G solvation = 112.568660 kcal Electronic energy + Delta-G solvation = -30087.703066 eV Core-core repulsion = 26015.227427 eV Total energy + Delta-G solvation = -4072.475639 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.68993 -42.43731 -40.27348 -37.98200 -36.17406 -34.69733 -34.36708 -33.54862 -32.79637 -31.83499 -30.41968 -29.20473 -27.85411 -26.99033 -26.62382 -25.23719 -24.38000 -23.28327 -21.61843 -21.10395 -20.91081 -19.95924 -18.55885 -18.53103 -18.18611 -17.40862 -17.02248 -16.97466 -16.64741 -16.33148 -15.85150 -15.48917 -15.36181 -15.03539 -14.89464 -14.71719 -14.58043 -14.08709 -13.96242 -13.90540 -13.82478 -13.57415 -13.36179 -13.09381 -12.99345 -12.97508 -12.92835 -12.72697 -12.63746 -12.35316 -12.04699 -11.92324 -11.78360 -11.64654 -11.14721 -10.78594 -10.39127 -10.07613 -9.98112 -9.61013 -9.41286 -8.96875 -7.99288 -5.43683 0.53878 0.91311 1.11504 1.44486 1.48042 1.54880 1.57477 1.63378 1.99549 2.37724 2.44283 2.54978 3.19633 3.41373 3.44951 3.59127 3.80416 3.82194 4.05098 4.13910 4.18293 4.22792 4.32423 4.36661 4.40332 4.47230 4.73652 4.76933 4.80653 4.85774 4.90748 4.92700 4.96569 5.00486 5.06179 5.12929 5.22204 5.22949 5.35104 5.42334 5.57079 5.59419 5.74215 6.07698 6.15540 6.18896 6.50994 6.78772 6.89951 6.97292 7.19954 7.64160 8.15748 9.10019 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.009895 B = 0.003364 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2829.141164 B = 8321.891493 C = 9769.265014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.025 3.975 3 N -0.365 5.365 4 H 0.460 0.540 5 N -0.275 5.275 6 C -0.038 4.038 7 C 0.596 3.404 8 O -0.564 6.564 9 N -0.701 5.701 10 C 0.216 3.784 11 C -0.276 4.276 12 C 0.068 3.932 13 N -0.325 5.325 14 N -0.366 5.366 15 C 0.096 3.904 16 C 0.251 3.749 17 N -0.615 5.615 18 C -0.269 4.269 19 H 0.081 0.919 20 C -0.043 4.043 21 N -0.932 5.932 22 Si 0.968 3.032 23 H -0.282 1.282 24 H -0.296 1.296 25 H -0.269 1.269 26 C 0.128 3.872 27 C 0.117 3.883 28 C -0.175 4.175 29 C -0.073 4.073 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.407 0.593 34 H 0.048 0.952 35 H 0.091 0.909 36 H 0.216 0.784 37 H 0.029 0.971 38 H 0.073 0.927 39 H 0.252 0.748 40 H 0.101 0.899 41 H 0.037 0.963 42 H 0.079 0.921 43 H 0.112 0.888 44 H 0.072 0.928 45 H 0.087 0.913 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.498 4.955 -12.383 18.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.102 4.102 3 N -0.082 5.082 4 H 0.309 0.691 5 N -0.112 5.112 6 C -0.197 4.197 7 C 0.382 3.618 8 O -0.442 6.442 9 N -0.351 5.351 10 C 0.092 3.908 11 C -0.288 4.288 12 C -0.118 4.118 13 N -0.145 5.145 14 N -0.148 5.148 15 C -0.036 4.036 16 C 0.124 3.876 17 N -0.339 5.339 18 C -0.398 4.398 19 H 0.099 0.901 20 C -0.239 4.239 21 N -0.578 5.578 22 Si 0.795 3.205 23 H -0.208 1.208 24 H -0.222 1.222 25 H -0.194 1.194 26 C 0.001 3.999 27 C -0.005 4.005 28 C -0.185 4.185 29 C -0.130 4.130 30 H 0.109 0.891 31 H 0.114 0.886 32 H 0.116 0.884 33 H 0.242 0.758 34 H 0.066 0.934 35 H 0.109 0.891 36 H 0.233 0.767 37 H 0.047 0.953 38 H 0.091 0.909 39 H 0.061 0.939 40 H 0.119 0.881 41 H 0.056 0.944 42 H 0.097 0.903 43 H 0.130 0.870 44 H 0.091 0.909 45 H 0.106 0.894 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.783 5.754 -12.549 17.517 hybrid contribution -0.767 -0.786 1.281 1.687 sum -11.550 4.968 -11.268 16.884 Atomic orbital electron populations 1.20529 0.83065 1.05654 1.04640 1.21769 0.96953 0.85664 1.05772 1.43300 1.02113 1.10575 1.52238 0.69145 1.73486 1.03372 1.14478 1.19862 1.21809 0.95123 0.90340 1.12453 1.17198 0.82366 0.86347 0.75915 1.90718 1.87257 1.13964 1.52297 1.45999 1.04852 1.10955 1.73268 1.19255 0.78787 0.90863 1.01864 1.19536 1.05095 1.11369 0.92816 1.24251 0.92088 0.95204 1.00293 1.77148 1.24793 1.22456 0.90092 1.48680 1.23469 1.36922 1.05730 1.22192 0.89711 0.93446 0.98201 1.19303 0.89673 0.98448 0.80151 1.44439 1.45772 1.24048 1.19623 1.19515 0.98446 1.25499 0.96326 0.90131 1.25761 0.94925 1.02602 1.00661 1.70117 1.02873 1.40596 1.44174 0.85264 0.77968 0.78033 0.79204 1.20848 1.22230 1.19355 1.21455 0.96773 0.88143 0.93553 1.22554 0.93322 0.94696 0.89950 1.20449 0.90286 0.98162 1.09614 1.20135 1.01619 0.88744 1.02533 0.89096 0.88590 0.88450 0.75808 0.93368 0.89121 0.76746 0.95340 0.90919 0.93900 0.88073 0.94446 0.90288 0.86994 0.90912 0.89438 0.92802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.14 71.24 0.72 0.06 16 2 C 0.02 0.46 7.23 41.40 0.30 0.76 16 3 N -0.37 -7.06 6.83 -47.93 -0.33 -7.39 16 4 H 0.46 4.98 8.96 -219.99 -1.97 3.00 16 5 N -0.27 -7.78 11.92 -48.18 -0.57 -8.35 16 6 C -0.04 -1.21 7.13 42.45 0.30 -0.91 16 7 C 0.60 21.87 7.82 86.75 0.68 22.55 16 8 O -0.56 -23.15 15.11 -3.95 -0.06 -23.21 16 9 N -0.70 -24.30 5.55 -469.84 -2.61 -26.91 16 10 C 0.22 7.57 5.95 85.63 0.51 8.08 16 11 C -0.28 -9.96 5.46 -20.24 -0.11 -10.07 16 12 C 0.07 2.16 11.97 85.26 1.02 3.18 16 13 N -0.32 -11.66 12.61 -56.80 -0.72 -12.37 16 14 N -0.37 -14.08 4.03 -333.93 -1.35 -15.42 16 15 C 0.10 3.99 6.71 41.31 0.28 4.26 16 16 C 0.25 12.24 5.11 85.55 0.44 12.68 16 17 N -0.62 -29.80 3.01 -701.01 -2.11 -31.91 16 18 C -0.27 -14.11 9.66 84.03 0.81 -13.30 16 19 H 0.08 4.02 7.88 -2.91 -0.02 3.99 16 20 C -0.04 -2.36 5.00 84.86 0.42 -1.94 16 21 N -0.93 -54.07 11.07 21.65 0.24 -53.83 16 22 Si 0.97 44.16 29.58 68.60 2.03 46.19 16 23 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 24 H -0.30 -13.82 7.11 99.48 0.71 -13.12 16 25 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 26 C 0.13 4.80 6.50 86.38 0.56 5.37 16 27 C 0.12 3.90 7.45 86.48 0.64 4.55 16 28 C -0.17 -4.61 6.25 -19.72 -0.12 -4.73 16 29 C -0.07 -1.70 9.61 71.24 0.68 -1.01 16 30 H 0.09 0.61 8.14 -2.39 -0.02 0.60 16 31 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.10 0.65 7.98 -2.39 -0.02 0.63 16 33 H 0.41 13.74 8.19 -92.70 -0.76 12.98 16 34 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 36 H 0.22 4.91 8.06 -2.91 -0.02 4.89 16 37 H 0.03 1.52 8.14 -2.38 -0.02 1.50 16 38 H 0.07 4.04 6.46 -2.39 -0.02 4.03 16 39 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 40 H 0.10 3.41 7.94 -2.39 -0.02 3.39 16 41 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 43 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 44 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.09 1.47 8.00 -2.39 -0.02 1.46 16 46 H 0.05 1.60 6.70 -2.38 -0.02 1.58 16 Total: -1.00 -74.55 384.79 -0.02 -74.57 By element: Atomic # 1 Polarization: 30.80 SS G_CDS: -1.69 Total: 29.11 kcal Atomic # 6 Polarization: 22.39 SS G_CDS: 7.14 Total: 29.53 kcal Atomic # 7 Polarization: -148.75 SS G_CDS: -7.44 Total: -156.19 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.06 Total: -23.21 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -74.55 -0.02 -74.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069854944.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.143 kcal (2) G-P(sol) polarization free energy of solvation -74.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds