Wall clock time and date at job start Wed Apr 1 2020 03:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47180 * 2 1 4 4 N 1.30445 * 125.98384 * 270.01856 * 3 2 1 5 5 N 1.39936 * 108.89748 * 179.72750 * 4 3 2 6 6 H 0.97004 * 125.75829 * 180.27983 * 5 4 3 7 7 C 1.34259 * 108.48641 * 0.42639 * 5 4 3 8 8 C 1.38037 * 107.42180 * 359.58526 * 7 5 4 9 9 C 1.47426 * 126.41829 * 180.26046 * 8 7 5 10 10 O 1.21606 * 120.00470 * 179.97438 * 9 8 7 11 11 N 1.34777 * 119.99807 * 359.97182 * 9 8 7 12 12 C 1.46499 * 120.00084 * 179.97438 * 11 9 8 13 13 C 1.50691 * 109.47408 * 180.02562 * 12 11 9 14 14 C 1.40070 * 126.12887 * 259.69757 * 13 12 11 15 15 N 1.31010 * 108.25702 * 179.85566 * 14 13 12 16 16 N 1.39747 * 108.17683 * 0.59873 * 15 14 13 17 17 C 1.34646 * 126.12487 * 80.00409 * 13 12 11 18 18 C 1.51040 * 127.90700 * 359.65593 * 17 13 12 19 19 N 1.47501 * 106.99929 * 169.52708 * 18 17 13 20 20 C 1.36940 * 121.01179 * 222.89787 * 19 18 17 21 21 H 1.07998 * 119.99966 * 155.91308 * 20 19 18 22 22 C 1.38812 * 119.99720 * 335.92058 * 20 19 18 23 23 N 1.31622 * 120.00268 * 344.44941 * 22 20 19 24 24 Si 1.86802 * 119.99830 * 164.45939 * 22 20 19 25 25 H 1.48492 * 109.47511 * 89.99426 * 24 22 20 26 26 H 1.48499 * 109.47142 * 209.99841 * 24 22 20 27 27 H 1.48501 * 109.47104 * 329.99246 * 24 22 20 28 28 C 1.47084 * 117.97886 * 42.92759 * 19 18 17 29 29 C 1.46554 * 127.32511 * 179.19031 * 16 15 14 30 30 H 1.09004 * 109.47617 * 300.00736 * 1 2 3 31 31 H 1.09005 * 109.46919 * 59.99947 * 1 2 3 32 32 H 1.08993 * 109.47675 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47169 * 239.99252 * 2 1 3 34 34 H 1.09005 * 109.46484 * 119.99414 * 2 1 3 35 35 H 1.08003 * 126.28466 * 179.84280 * 7 5 4 36 36 H 0.97000 * 120.00083 * 0.02562 * 11 9 8 37 37 H 1.09000 * 109.47577 * 300.01134 * 12 11 9 38 38 H 1.09008 * 109.46797 * 60.00708 * 12 11 9 39 39 H 1.08008 * 125.87232 * 0.03304 * 14 13 12 40 40 H 1.09003 * 109.94598 * 288.89750 * 18 17 13 41 41 H 1.08994 * 109.95150 * 50.15432 * 18 17 13 42 42 H 0.96997 * 119.99667 * 180.02562 * 23 22 20 43 43 H 1.09000 * 109.52020 * 56.33539 * 28 19 18 44 44 H 1.09005 * 109.51560 * 176.50031 * 28 19 18 45 45 H 1.08997 * 109.51010 * 41.59763 * 29 16 15 46 46 H 1.08997 * 109.50808 * 281.46083 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2875 2.1435 -1.0555 5 7 2.7276 3.4067 -0.6444 6 1 2.9802 4.1373 -1.2303 7 6 2.7442 3.4356 0.6978 8 6 2.3091 2.2037 1.1432 9 6 2.1608 1.7834 2.5485 10 8 1.7648 0.6637 2.8098 11 7 2.4643 2.6402 3.5436 12 6 2.3165 2.2228 4.9401 13 6 2.7173 3.3565 5.8484 14 6 3.9457 3.4916 6.5077 15 7 3.9201 4.6040 7.1994 16 7 2.6718 5.2042 7.0135 17 6 1.9567 4.4181 6.1760 18 6 0.5512 4.7291 5.7187 19 7 0.0679 5.8524 6.5436 20 6 -1.2026 5.8570 7.0545 21 1 -1.4281 6.4391 7.9358 22 6 -2.2006 5.1134 6.4397 23 7 -2.0231 4.6565 5.2182 24 14 -3.7956 4.7613 7.3460 25 1 -4.7733 5.8432 7.0660 26 1 -4.3496 3.4623 6.8867 27 1 -3.5318 4.6982 8.8061 28 6 0.9919 6.9676 6.8002 29 6 2.1899 6.4547 7.6068 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8901 35 1 3.0394 4.2710 1.3155 36 1 2.7798 3.5334 3.3352 37 1 1.2775 1.9545 5.1312 38 1 2.9554 1.3605 5.1311 39 1 4.7730 2.7994 6.4529 40 1 0.5572 5.0157 4.6670 41 1 -0.0885 3.8587 5.8642 42 1 -2.7206 4.1373 4.7885 43 1 1.3401 7.3776 5.8521 44 1 0.4773 7.7439 7.3665 45 1 2.9870 7.1978 7.5871 46 1 1.8845 6.2746 8.6375 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001069866507.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:46 Heat of formation + Delta-G solvation = 134.320560 kcal Electronic energy + Delta-G solvation = -30248.476376 eV Core-core repulsion = 26176.943970 eV Total energy + Delta-G solvation = -4071.532406 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.45552 -40.98312 -38.73120 -36.32788 -34.87291 -34.03656 -32.99558 -31.49570 -30.43413 -30.31479 -30.19373 -28.56293 -26.08725 -24.93918 -23.99144 -23.56102 -22.77839 -21.76760 -20.27591 -20.14203 -19.48278 -18.66822 -18.15377 -16.73867 -16.49213 -15.95038 -15.47334 -15.31620 -15.11935 -14.67015 -14.65822 -14.28839 -13.98045 -13.90566 -13.69555 -13.52728 -13.31065 -13.21799 -12.92554 -12.51008 -12.44803 -12.27609 -11.71446 -11.61196 -11.43963 -11.31588 -11.16683 -10.98967 -10.89411 -10.74435 -10.74071 -10.21992 -10.18916 -10.09612 -9.65657 -9.57191 -8.93310 -8.91145 -8.59383 -8.55331 -7.93855 -7.10033 -6.02811 -3.45616 1.47986 2.17840 2.40474 2.60580 2.95293 3.01039 3.28047 3.36837 3.37951 3.67877 3.87140 4.30538 4.44005 4.58160 4.94287 5.04631 5.05894 5.19545 5.27236 5.35841 5.37128 5.48937 5.51630 5.54202 5.59035 5.63399 5.68082 5.73577 5.86134 6.02509 6.17419 6.20364 6.20798 6.35371 6.37797 6.38554 6.48364 6.54707 6.78715 6.89714 6.99196 7.07712 7.13540 7.46362 7.55964 7.59018 7.90026 8.07827 8.22048 8.59713 8.90555 9.53007 10.05246 11.08025 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.009440 B = 0.003613 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2965.352068 B = 7748.813890 C = 9373.103960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.048 4.048 3 C 0.138 3.862 4 N -0.303 5.303 5 N -0.464 5.464 6 H 0.442 0.558 7 C 0.105 3.895 8 C -0.279 4.279 9 C 0.592 3.408 10 O -0.544 6.544 11 N -0.717 5.717 12 C 0.212 3.788 13 C -0.288 4.288 14 C 0.056 3.944 15 N -0.319 5.319 16 N -0.358 5.358 17 C 0.119 3.881 18 C 0.231 3.769 19 N -0.596 5.596 20 C -0.266 4.266 21 H 0.073 0.927 22 C 0.010 3.990 23 N -0.902 5.902 24 Si 0.907 3.093 25 H -0.285 1.285 26 H -0.286 1.286 27 H -0.278 1.278 28 C 0.129 3.871 29 C 0.114 3.886 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.102 0.898 35 H 0.185 0.815 36 H 0.394 0.606 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.175 0.825 40 H 0.056 0.944 41 H 0.110 0.890 42 H 0.260 0.740 43 H 0.035 0.965 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.811 -1.221 -7.933 13.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.087 4.087 3 C -0.030 4.030 4 N -0.125 5.125 5 N -0.168 5.168 6 H 0.287 0.713 7 C -0.048 4.048 8 C -0.294 4.294 9 C 0.379 3.621 10 O -0.422 6.422 11 N -0.368 5.368 12 C 0.089 3.911 13 C -0.300 4.300 14 C -0.130 4.130 15 N -0.139 5.139 16 N -0.139 5.139 17 C -0.013 4.013 18 C 0.105 3.895 19 N -0.319 5.319 20 C -0.395 4.395 21 H 0.091 0.909 22 C -0.190 4.190 23 N -0.545 5.545 24 Si 0.736 3.264 25 H -0.212 1.212 26 H -0.212 1.212 27 H -0.204 1.204 28 C 0.001 3.999 29 C -0.010 4.010 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.120 0.880 35 H 0.202 0.798 36 H 0.228 0.772 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.192 0.808 40 H 0.073 0.927 41 H 0.127 0.873 42 H 0.070 0.930 43 H 0.053 0.947 44 H 0.102 0.898 45 H 0.098 0.902 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 11.001 -1.167 -8.206 13.774 hybrid contribution -0.819 0.461 0.479 1.055 sum 10.181 -0.707 -7.727 12.801 Atomic orbital electron populations 1.21626 0.93868 1.02029 1.02277 1.20119 0.96634 0.88008 1.03919 1.22480 0.94798 0.97014 0.88707 1.77131 1.22286 0.90555 1.22542 1.46071 1.52129 1.13165 1.05463 0.71337 1.23171 0.97219 0.98810 0.85619 1.20374 1.18710 0.95428 0.94919 1.17183 0.76955 0.84661 0.83346 1.90728 1.47013 1.20275 1.84229 1.46018 1.67972 1.16595 1.06191 1.19288 1.01440 0.93136 0.77281 1.19453 0.96634 1.01470 1.12429 1.23684 0.97630 0.95440 0.96296 1.77172 1.01116 1.10554 1.25044 1.48499 1.09800 1.19361 1.36284 1.22590 0.97106 0.90688 0.90886 1.19915 0.83068 0.93164 0.93380 1.44204 1.11148 1.16147 1.60390 1.19140 0.84343 1.29043 1.06939 0.90923 1.25027 0.97876 1.00859 0.95201 1.69932 1.34467 1.39000 1.11113 0.86227 0.82974 0.77801 0.79364 1.21179 1.21203 1.20354 1.21266 0.89621 0.91714 0.97305 1.22547 0.97912 0.81968 0.98584 0.91753 0.93098 0.91984 0.90907 0.87991 0.79835 0.77207 0.90792 0.91287 0.80753 0.92656 0.87266 0.93004 0.94710 0.89761 0.90243 0.90605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.89 37.16 0.37 -1.36 16 2 C -0.05 -0.60 5.97 -27.88 -0.17 -0.76 16 3 C 0.14 1.90 6.52 -82.02 -0.53 1.37 16 4 N -0.30 -3.93 12.63 33.89 0.43 -3.51 16 5 N -0.46 -4.50 7.29 30.85 0.22 -4.27 16 6 H 0.44 2.62 8.96 -182.72 -1.64 0.98 16 7 C 0.10 1.05 11.52 -16.56 -0.19 0.86 16 8 C -0.28 -3.78 6.13 -105.07 -0.64 -4.42 16 9 C 0.59 9.15 7.81 -12.52 -0.10 9.05 16 10 O -0.54 -9.90 14.92 5.27 0.08 -9.82 16 11 N -0.72 -10.13 5.54 -62.57 -0.35 -10.48 16 12 C 0.21 3.30 5.95 -5.20 -0.03 3.27 16 13 C -0.29 -4.79 5.46 -105.21 -0.57 -5.36 16 14 C 0.06 0.88 11.97 -17.22 -0.21 0.68 16 15 N -0.32 -5.70 12.61 30.70 0.39 -5.32 16 16 N -0.36 -6.65 4.03 -56.93 -0.23 -6.87 16 17 C 0.12 2.27 6.71 -82.16 -0.55 1.72 16 18 C 0.23 5.06 5.11 -4.48 -0.02 5.04 16 19 N -0.60 -13.55 3.01 -172.96 -0.52 -14.07 16 20 C -0.27 -6.70 9.67 -15.06 -0.15 -6.84 16 21 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16 22 C 0.01 0.26 5.00 -17.43 -0.09 0.17 16 23 N -0.90 -24.20 11.07 55.49 0.61 -23.59 16 24 Si 0.91 20.61 29.58 -169.99 -5.03 15.58 16 25 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 27 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 28 C 0.13 2.34 6.49 -3.59 -0.02 2.32 16 29 C 0.11 1.87 7.44 -3.88 -0.03 1.84 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.10 1.38 6.55 -51.93 -0.34 1.04 16 35 H 0.18 1.21 7.46 -52.48 -0.39 0.82 16 36 H 0.39 4.84 7.39 -40.82 -0.30 4.54 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16 39 H 0.18 2.13 8.06 -52.48 -0.42 1.70 16 40 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.11 2.72 6.46 -51.93 -0.34 2.39 16 42 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 43 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.08 1.41 7.94 -51.93 -0.41 1.00 16 45 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 LS Contribution 384.08 15.07 5.79 5.79 Total: -1.00 -32.30 384.08 -9.16 -41.46 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -7.62 Total: 7.54 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: -2.94 Total: 7.56 kcal Atomic # 7 Polarization: -68.66 SS G_CDS: 0.56 Total: -68.11 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.08 Total: -9.82 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.03 Total: 15.58 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.30 -9.16 -41.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069866507.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.777 kcal (2) G-P(sol) polarization free energy of solvation -32.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds