Wall clock time and date at job start Wed Apr 1 2020 03:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47180 * 2 1 4 4 N 1.30445 * 125.98384 * 270.01856 * 3 2 1 5 5 N 1.39936 * 108.89748 * 179.72750 * 4 3 2 6 6 H 0.97004 * 125.75829 * 180.27983 * 5 4 3 7 7 C 1.34259 * 108.48641 * 0.42639 * 5 4 3 8 8 C 1.38037 * 107.42180 * 359.58526 * 7 5 4 9 9 C 1.47426 * 126.41829 * 180.26046 * 8 7 5 10 10 O 1.21606 * 120.00470 * 179.97438 * 9 8 7 11 11 N 1.34777 * 119.99807 * 359.97182 * 9 8 7 12 12 C 1.46499 * 120.00084 * 179.97438 * 11 9 8 13 13 C 1.50691 * 109.47408 * 180.02562 * 12 11 9 14 14 C 1.40070 * 126.12887 * 259.69757 * 13 12 11 15 15 N 1.31010 * 108.25702 * 179.85566 * 14 13 12 16 16 N 1.39747 * 108.17683 * 0.59873 * 15 14 13 17 17 C 1.34646 * 126.12487 * 80.00409 * 13 12 11 18 18 C 1.51040 * 127.90700 * 359.65593 * 17 13 12 19 19 N 1.47501 * 106.99929 * 169.52708 * 18 17 13 20 20 C 1.36940 * 121.01179 * 222.89787 * 19 18 17 21 21 H 1.07998 * 119.99966 * 155.91308 * 20 19 18 22 22 C 1.38812 * 119.99720 * 335.92058 * 20 19 18 23 23 N 1.31622 * 120.00268 * 344.44941 * 22 20 19 24 24 Si 1.86802 * 119.99830 * 164.45939 * 22 20 19 25 25 H 1.48492 * 109.47511 * 89.99426 * 24 22 20 26 26 H 1.48499 * 109.47142 * 209.99841 * 24 22 20 27 27 H 1.48501 * 109.47104 * 329.99246 * 24 22 20 28 28 C 1.47084 * 117.97886 * 42.92759 * 19 18 17 29 29 C 1.46554 * 127.32511 * 179.19031 * 16 15 14 30 30 H 1.09004 * 109.47617 * 300.00736 * 1 2 3 31 31 H 1.09005 * 109.46919 * 59.99947 * 1 2 3 32 32 H 1.08993 * 109.47675 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47169 * 239.99252 * 2 1 3 34 34 H 1.09005 * 109.46484 * 119.99414 * 2 1 3 35 35 H 1.08003 * 126.28466 * 179.84280 * 7 5 4 36 36 H 0.97000 * 120.00083 * 0.02562 * 11 9 8 37 37 H 1.09000 * 109.47577 * 300.01134 * 12 11 9 38 38 H 1.09008 * 109.46797 * 60.00708 * 12 11 9 39 39 H 1.08008 * 125.87232 * 0.03304 * 14 13 12 40 40 H 1.09003 * 109.94598 * 288.89750 * 18 17 13 41 41 H 1.08994 * 109.95150 * 50.15432 * 18 17 13 42 42 H 0.96997 * 119.99667 * 180.02562 * 23 22 20 43 43 H 1.09000 * 109.52020 * 56.33539 * 28 19 18 44 44 H 1.09005 * 109.51560 * 176.50031 * 28 19 18 45 45 H 1.08997 * 109.51010 * 41.59763 * 29 16 15 46 46 H 1.08997 * 109.50808 * 281.46083 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2875 2.1435 -1.0555 5 7 2.7276 3.4067 -0.6444 6 1 2.9802 4.1373 -1.2303 7 6 2.7442 3.4356 0.6978 8 6 2.3091 2.2037 1.1432 9 6 2.1608 1.7834 2.5485 10 8 1.7648 0.6637 2.8098 11 7 2.4643 2.6402 3.5436 12 6 2.3165 2.2228 4.9401 13 6 2.7173 3.3565 5.8484 14 6 3.9457 3.4916 6.5077 15 7 3.9201 4.6040 7.1994 16 7 2.6718 5.2042 7.0135 17 6 1.9567 4.4181 6.1760 18 6 0.5512 4.7291 5.7187 19 7 0.0679 5.8524 6.5436 20 6 -1.2026 5.8570 7.0545 21 1 -1.4281 6.4391 7.9358 22 6 -2.2006 5.1134 6.4397 23 7 -2.0231 4.6565 5.2182 24 14 -3.7956 4.7613 7.3460 25 1 -4.7733 5.8432 7.0660 26 1 -4.3496 3.4623 6.8867 27 1 -3.5318 4.6982 8.8061 28 6 0.9919 6.9676 6.8002 29 6 2.1899 6.4547 7.6068 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8901 35 1 3.0394 4.2710 1.3155 36 1 2.7798 3.5334 3.3352 37 1 1.2775 1.9545 5.1312 38 1 2.9554 1.3605 5.1311 39 1 4.7730 2.7994 6.4529 40 1 0.5572 5.0157 4.6670 41 1 -0.0885 3.8587 5.8642 42 1 -2.7206 4.1373 4.7885 43 1 1.3401 7.3776 5.8521 44 1 0.4773 7.7439 7.3665 45 1 2.9870 7.1978 7.5871 46 1 1.8845 6.2746 8.6375 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001069866507.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:45 Heat of formation + Delta-G solvation = 111.853481 kcal Electronic energy + Delta-G solvation = -30249.450622 eV Core-core repulsion = 26176.943970 eV Total energy + Delta-G solvation = -4072.506652 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.46240 -42.30797 -39.94125 -37.94086 -36.11722 -35.08978 -34.57575 -32.99361 -31.85731 -31.49772 -31.26681 -29.90473 -27.76852 -26.33192 -25.14236 -24.96126 -23.89295 -23.23383 -21.58022 -21.28279 -20.55018 -19.96996 -19.31248 -18.51840 -17.74019 -17.27955 -16.78706 -16.62356 -16.36127 -16.17582 -15.65873 -15.54538 -15.39386 -15.24825 -14.96478 -14.93466 -14.67874 -14.62184 -14.04779 -13.86426 -13.79709 -13.33186 -13.25762 -13.03117 -12.92978 -12.70439 -12.59521 -12.42307 -12.33410 -12.14309 -12.01293 -11.90515 -11.76756 -11.56940 -10.86027 -10.75203 -10.52231 -10.05710 -10.03109 -9.66314 -9.35002 -8.92786 -7.97630 -5.40617 0.58140 0.96879 1.13038 1.45569 1.49792 1.56423 1.62218 1.69611 1.85635 2.45904 2.53067 2.68577 3.22138 3.45588 3.49982 3.64698 3.77406 3.86395 4.13134 4.20250 4.22958 4.26268 4.31536 4.40211 4.45290 4.49884 4.52231 4.60848 4.71811 4.80386 4.86142 4.91077 4.99719 5.05769 5.06189 5.20227 5.28849 5.32396 5.41012 5.47691 5.58989 5.60427 5.80047 6.12686 6.21901 6.28133 6.52161 6.78305 6.84187 7.01147 7.42925 7.67527 8.18087 9.11257 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.009440 B = 0.003613 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2965.352068 B = 7748.813890 C = 9373.103960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.047 4.047 3 C 0.123 3.877 4 N -0.321 5.321 5 N -0.447 5.447 6 H 0.460 0.540 7 C 0.132 3.868 8 C -0.315 4.315 9 C 0.590 3.410 10 O -0.580 6.580 11 N -0.708 5.708 12 C 0.219 3.781 13 C -0.273 4.273 14 C 0.068 3.932 15 N -0.327 5.327 16 N -0.367 5.367 17 C 0.097 3.903 18 C 0.250 3.750 19 N -0.616 5.616 20 C -0.269 4.269 21 H 0.078 0.922 22 C -0.040 4.040 23 N -0.928 5.928 24 Si 0.962 3.038 25 H -0.282 1.282 26 H -0.297 1.297 27 H -0.272 1.272 28 C 0.129 3.871 29 C 0.117 3.883 30 H 0.034 0.966 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.223 0.777 36 H 0.405 0.595 37 H 0.042 0.958 38 H 0.084 0.916 39 H 0.214 0.786 40 H 0.037 0.963 41 H 0.070 0.930 42 H 0.252 0.748 43 H 0.042 0.958 44 H 0.098 0.902 45 H 0.112 0.888 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.851 0.027 -7.811 15.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.086 4.086 3 C -0.044 4.044 4 N -0.144 5.144 5 N -0.153 5.153 6 H 0.309 0.691 7 C -0.023 4.023 8 C -0.330 4.330 9 C 0.378 3.622 10 O -0.461 6.461 11 N -0.359 5.359 12 C 0.095 3.905 13 C -0.285 4.285 14 C -0.119 4.119 15 N -0.147 5.147 16 N -0.149 5.149 17 C -0.035 4.035 18 C 0.123 3.877 19 N -0.339 5.339 20 C -0.398 4.398 21 H 0.096 0.904 22 C -0.236 4.236 23 N -0.574 5.574 24 Si 0.790 3.210 25 H -0.208 1.208 26 H -0.223 1.223 27 H -0.197 1.197 28 C 0.002 3.998 29 C -0.005 4.005 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.240 0.760 36 H 0.240 0.760 37 H 0.061 0.939 38 H 0.102 0.898 39 H 0.231 0.769 40 H 0.055 0.945 41 H 0.088 0.912 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.116 0.884 45 H 0.130 0.870 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 13.075 0.148 -8.093 15.377 hybrid contribution -1.372 0.136 0.431 1.445 sum 11.703 0.283 -7.662 13.991 Atomic orbital electron populations 1.21564 0.93996 1.02708 1.00897 1.20093 0.96471 0.88039 1.03992 1.22652 0.95136 0.97552 0.89086 1.77070 1.23013 0.91771 1.22569 1.46111 1.50658 1.12753 1.05786 0.69142 1.23644 0.94430 0.98360 0.85843 1.20334 1.21663 0.97271 0.93774 1.17490 0.76174 0.84221 0.84284 1.90702 1.48707 1.21850 1.84866 1.45838 1.67681 1.16967 1.05381 1.19122 0.99888 0.93425 0.78042 1.19529 0.96717 1.00471 1.11761 1.24246 0.97923 0.95138 0.94561 1.77172 1.00635 1.11365 1.25568 1.48675 1.09995 1.19858 1.36328 1.22196 0.96220 0.92314 0.92757 1.19345 0.84182 0.91622 0.92527 1.44433 1.11216 1.17876 1.60421 1.19467 0.85393 1.28131 1.06800 0.90415 1.25667 1.00552 1.01518 0.95857 1.70076 1.34863 1.40069 1.12349 0.85363 0.80104 0.76959 0.78550 1.20799 1.22324 1.19689 1.21431 0.89496 0.90763 0.98116 1.22526 0.98073 0.82201 0.97748 0.94656 0.92722 0.90338 0.89162 0.89438 0.76037 0.75951 0.93947 0.89780 0.76909 0.94520 0.91157 0.93915 0.93976 0.88420 0.86979 0.90731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.40 9.89 71.98 0.71 -2.69 16 2 C -0.05 -1.20 5.97 29.85 0.18 -1.02 16 3 C 0.12 3.38 6.52 43.52 0.28 3.66 16 4 N -0.32 -7.99 12.63 -46.68 -0.59 -8.58 16 5 N -0.45 -7.67 7.29 -56.32 -0.41 -8.08 16 6 H 0.46 4.16 8.96 -213.42 -1.91 2.25 16 7 C 0.13 2.37 11.52 84.27 0.97 3.34 16 8 C -0.32 -8.40 6.13 -20.16 -0.12 -8.52 16 9 C 0.59 18.49 7.81 86.66 0.68 19.17 16 10 O -0.58 -22.00 14.92 -4.05 -0.06 -22.06 16 11 N -0.71 -19.75 5.54 -470.11 -2.60 -22.36 16 12 C 0.22 6.83 5.95 85.63 0.51 7.34 16 13 C -0.27 -8.74 5.46 -20.25 -0.11 -8.85 16 14 C 0.07 1.92 11.97 85.26 1.02 2.94 16 15 N -0.33 -10.77 12.61 -56.79 -0.72 -11.48 16 16 N -0.37 -12.92 4.03 -334.03 -1.35 -14.26 16 17 C 0.10 3.63 6.71 41.31 0.28 3.91 16 18 C 0.25 11.22 5.11 85.55 0.44 11.66 16 19 N -0.62 -28.08 3.01 -701.13 -2.11 -30.19 16 20 C -0.27 -13.59 9.67 84.03 0.81 -12.78 16 21 H 0.08 3.77 7.88 -2.91 -0.02 3.74 16 22 C -0.04 -2.08 5.00 84.86 0.42 -1.65 16 23 N -0.93 -51.65 11.07 21.65 0.24 -51.41 16 24 Si 0.96 43.09 29.58 68.60 2.03 45.12 16 25 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 26 H -0.30 -13.67 7.11 99.48 0.71 -12.97 16 27 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 28 C 0.13 4.48 6.49 86.36 0.56 5.04 16 29 C 0.12 3.60 7.44 86.46 0.64 4.25 16 30 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.09 2.49 6.55 -2.38 -0.02 2.47 16 35 H 0.22 2.11 7.46 -2.91 -0.02 2.09 16 36 H 0.41 9.39 7.39 -92.71 -0.68 8.70 16 37 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 39 H 0.21 4.25 8.06 -2.91 -0.02 4.22 16 40 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.07 3.69 6.46 -2.39 -0.02 3.68 16 42 H 0.25 13.88 8.31 -92.71 -0.77 13.11 16 43 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.10 3.09 7.94 -2.38 -0.02 3.07 16 45 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 46 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -72.01 384.08 0.14 -71.86 By element: Atomic # 1 Polarization: 27.24 SS G_CDS: -1.56 Total: 25.68 kcal Atomic # 6 Polarization: 18.51 SS G_CDS: 7.27 Total: 25.78 kcal Atomic # 7 Polarization: -138.84 SS G_CDS: -7.54 Total: -146.38 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.06 Total: -22.06 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -72.01 0.14 -71.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069866507.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.715 kcal (2) G-P(sol) polarization free energy of solvation -72.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds