Wall clock time and date at job start Wed Apr 1 2020 03:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30848 * 125.42007 * 2 1 4 4 C 1.33326 * 109.68284 * 179.70643 * 3 2 1 5 5 C 1.36656 * 107.78534 * 0.43993 * 4 3 2 6 6 C 1.46766 * 126.84516 * 179.83549 * 5 4 3 7 7 O 1.21686 * 120.00250 * 174.61220 * 6 5 4 8 8 N 1.34781 * 120.00018 * 354.62202 * 6 5 4 9 9 C 1.46495 * 120.00072 * 184.87778 * 8 6 5 10 10 C 1.50693 * 109.47163 * 179.97438 * 9 8 6 11 11 C 1.40068 * 126.12852 * 259.68738 * 10 9 8 12 12 N 1.31018 * 108.25769 * 179.85189 * 11 10 9 13 13 N 1.39746 * 108.17338 * 0.60930 * 12 11 10 14 14 C 1.34648 * 126.12440 * 80.00333 * 10 9 8 15 15 C 1.51042 * 127.90839 * 359.64951 * 14 10 9 16 16 N 1.47497 * 107.00314 * 169.53187 * 15 14 10 17 17 C 1.36932 * 121.01414 * 222.90674 * 16 15 14 18 18 H 1.07997 * 120.00612 * 152.11781 * 17 16 15 19 19 C 1.38815 * 119.99515 * 332.11030 * 17 16 15 20 20 N 1.31611 * 120.00265 * 350.28934 * 19 17 16 21 21 Si 1.86805 * 119.99766 * 170.28582 * 19 17 16 22 22 H 1.48503 * 109.46869 * 90.00017 * 21 19 17 23 23 H 1.48500 * 109.47210 * 209.99769 * 21 19 17 24 24 H 1.48501 * 109.47146 * 330.00299 * 21 19 17 25 25 C 1.47095 * 117.97614 * 42.92214 * 16 15 14 26 26 C 1.46547 * 127.32330 * 179.18402 * 13 12 11 27 27 N 1.34496 * 125.41183 * 179.97438 * 2 1 3 28 28 C 1.46501 * 126.47721 * 359.97438 * 27 2 1 29 29 H 1.08996 * 109.47407 * 270.02852 * 1 2 3 30 30 H 1.09004 * 109.46963 * 30.02621 * 1 2 3 31 31 H 1.09002 * 109.47709 * 150.02088 * 1 2 3 32 32 H 1.08005 * 126.10487 * 180.27915 * 4 3 2 33 33 H 0.96994 * 119.99929 * 4.87224 * 8 6 5 34 34 H 1.09003 * 109.47377 * 299.99914 * 9 8 6 35 35 H 1.09001 * 109.47063 * 59.99298 * 9 8 6 36 36 H 1.08001 * 125.87165 * 0.04125 * 11 10 9 37 37 H 1.09003 * 109.94545 * 288.90194 * 15 14 10 38 38 H 1.08998 * 109.94902 * 50.15903 * 15 14 10 39 39 H 0.97000 * 120.00344 * 180.02562 * 20 19 17 40 40 H 1.08996 * 109.51450 * 56.34272 * 25 16 15 41 41 H 1.09003 * 109.51262 * 176.50401 * 25 16 15 42 42 H 1.08998 * 109.51152 * 41.59460 * 26 13 12 43 43 H 1.09000 * 109.51064 * 281.45866 * 26 13 12 44 44 H 1.09004 * 109.47170 * 274.12405 * 28 27 2 45 45 H 1.09000 * 109.46819 * 34.12327 * 28 27 2 46 46 H 1.08997 * 109.47032 * 154.12237 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0663 0.0000 4 6 3.5486 0.7047 0.0064 5 6 3.5975 -0.6610 0.0007 6 6 4.8027 -1.4985 0.0012 7 8 4.7034 -2.7077 0.0946 8 7 6.0197 -0.9283 -0.1016 9 6 7.2153 -1.7679 -0.2088 10 6 8.4370 -0.8917 -0.3114 11 6 9.1275 -0.5717 -1.4873 12 7 10.1290 0.2130 -1.1746 13 7 10.1161 0.4057 0.2095 14 6 9.0638 -0.2808 0.7118 15 6 8.7004 -0.3172 2.1774 16 7 9.8239 0.2899 2.9156 17 6 10.2886 -0.2677 4.0767 18 1 11.3200 -0.1311 4.3664 19 6 9.4338 -1.0083 4.8815 20 7 8.1410 -1.0177 4.6350 21 14 10.1186 -1.9918 6.3145 22 1 10.1318 -1.1451 7.5345 23 1 9.2654 -3.1844 6.5490 24 1 11.5028 -2.4274 5.9994 25 6 10.4296 1.5127 2.3666 26 6 11.0587 1.1967 1.0053 27 7 2.2863 -1.0962 0.0005 28 6 1.8309 -2.4886 0.0016 29 1 -0.3634 0.0005 1.0276 30 1 -0.3633 0.8898 -0.5143 31 1 -0.3634 -0.8902 -0.5135 32 1 4.3979 1.3720 0.0122 33 1 6.1038 0.0380 -0.1047 34 1 7.2951 -2.4012 0.6748 35 1 7.1415 -2.3934 -1.0985 36 1 8.8756 -0.9108 -2.4812 37 1 7.7895 0.2563 2.3491 38 1 8.5579 -1.3487 2.4997 39 1 7.5437 -1.5350 5.1976 40 1 9.6615 2.2763 2.2442 41 1 11.1993 1.8753 3.0480 42 1 11.2844 2.1268 0.4838 43 1 11.9775 0.6287 1.1519 44 1 1.6481 -2.8102 1.0270 45 1 0.9092 -2.5698 -0.5745 46 1 2.5966 -3.1216 -0.4467 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001069871340.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:29 Heat of formation + Delta-G solvation = 108.621376 kcal Electronic energy + Delta-G solvation = -30134.120182 eV Core-core repulsion = 26061.473376 eV Total energy + Delta-G solvation = -4072.646807 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.28269 -42.41906 -40.25444 -37.95732 -36.29604 -35.06218 -34.60168 -33.22651 -32.62226 -31.80882 -30.47901 -28.77094 -27.91745 -27.54279 -26.10382 -25.12105 -23.85097 -23.26850 -21.62462 -21.51229 -20.80194 -19.97860 -18.87531 -18.53564 -17.58737 -17.30907 -17.21788 -16.79753 -16.67287 -16.32671 -15.91647 -15.51038 -15.40175 -15.09408 -14.98036 -14.85881 -14.67548 -14.18763 -14.15277 -14.05465 -13.93844 -13.70558 -13.33551 -13.30400 -13.09474 -13.07619 -12.94117 -12.74696 -12.62566 -12.34246 -12.06919 -11.91246 -11.64468 -11.48715 -10.98529 -10.78895 -10.74287 -10.15803 -10.06149 -9.48135 -9.40150 -8.89926 -7.98901 -5.47577 0.25544 0.92170 1.39709 1.45243 1.47508 1.55182 1.62051 1.75371 1.78741 2.28378 2.44088 2.55622 3.21941 3.40670 3.43400 3.60722 3.69356 3.83864 3.88654 3.97837 4.13587 4.19573 4.24598 4.30758 4.36347 4.38237 4.46821 4.57678 4.71090 4.74327 4.76507 4.79020 4.89193 4.93468 5.02317 5.05138 5.16625 5.24574 5.35758 5.38265 5.46522 5.57737 5.76289 6.08441 6.09273 6.22259 6.46347 6.81006 6.86159 6.99597 7.11589 7.64432 8.17287 9.09996 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.010122 B = 0.003312 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.507458 B = 8452.772018 C = 9929.582952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.228 3.772 3 N -0.527 5.527 4 C 0.039 3.961 5 C -0.109 4.109 6 C 0.593 3.407 7 O -0.581 6.581 8 N -0.697 5.697 9 C 0.221 3.779 10 C -0.276 4.276 11 C 0.069 3.931 12 N -0.326 5.326 13 N -0.366 5.366 14 C 0.097 3.903 15 C 0.251 3.749 16 N -0.616 5.616 17 C -0.269 4.269 18 H 0.078 0.922 19 C -0.041 4.041 20 N -0.932 5.932 21 Si 0.968 3.032 22 H -0.281 1.281 23 H -0.296 1.296 24 H -0.270 1.270 25 C 0.128 3.872 26 C 0.117 3.883 27 N -0.430 5.430 28 C 0.063 3.937 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.190 0.810 33 H 0.408 0.592 34 H 0.048 0.952 35 H 0.091 0.909 36 H 0.216 0.784 37 H 0.034 0.966 38 H 0.071 0.929 39 H 0.252 0.748 40 H 0.039 0.961 41 H 0.099 0.901 42 H 0.112 0.888 43 H 0.077 0.923 44 H 0.084 0.916 45 H 0.124 0.876 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.091 1.338 -12.281 16.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.034 4.034 3 N -0.246 5.246 4 C -0.116 4.116 5 C -0.225 4.225 6 C 0.381 3.619 7 O -0.463 6.463 8 N -0.347 5.347 9 C 0.097 3.903 10 C -0.288 4.288 11 C -0.117 4.117 12 N -0.146 5.146 13 N -0.148 5.148 14 C -0.034 4.034 15 C 0.124 3.876 16 N -0.339 5.339 17 C -0.398 4.398 18 H 0.095 0.905 19 C -0.237 4.237 20 N -0.577 5.577 21 Si 0.796 3.204 22 H -0.208 1.208 23 H -0.223 1.223 24 H -0.195 1.195 25 C 0.001 3.999 26 C -0.005 4.005 27 N -0.111 5.111 28 C -0.078 4.078 29 H 0.115 0.885 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.207 0.793 33 H 0.244 0.756 34 H 0.066 0.934 35 H 0.109 0.891 36 H 0.233 0.767 37 H 0.051 0.949 38 H 0.089 0.911 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.117 0.883 42 H 0.130 0.870 43 H 0.095 0.905 44 H 0.103 0.897 45 H 0.142 0.858 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.438 1.768 -12.493 16.375 hybrid contribution 0.211 -1.382 1.448 2.013 sum -10.227 0.386 -11.045 15.057 Atomic orbital electron populations 1.20507 0.81018 1.05974 1.05211 1.24338 0.97631 0.80493 1.00953 1.70119 1.02449 1.29412 1.22648 1.22922 0.95745 0.91459 1.01470 1.20693 0.85856 0.95039 1.20909 1.16924 0.82688 0.86310 0.75981 1.90744 1.87326 1.15390 1.52798 1.45738 1.04713 1.11096 1.73118 1.19216 0.79015 0.90330 1.01717 1.19494 1.04377 1.12546 0.92420 1.24262 0.92146 0.95442 0.99887 1.77175 1.23764 1.22764 0.90931 1.48681 1.22685 1.38808 1.04612 1.22251 0.89425 0.93736 0.98029 1.19342 0.89337 0.98753 0.80193 1.44393 1.38126 1.26245 1.25165 1.19470 0.94082 1.28811 0.97440 0.90471 1.25838 0.95266 1.02277 1.00296 1.70054 1.02612 1.43895 1.41156 0.85267 0.77729 0.77844 0.79547 1.20759 1.22271 1.19467 1.21448 0.97780 0.88475 0.92222 1.22530 0.90851 0.95520 0.91630 1.45298 1.04566 1.09496 1.51701 1.22453 1.03094 0.77235 1.04992 0.88463 0.88067 0.87832 0.79295 0.75580 0.93363 0.89096 0.76733 0.94866 0.91053 0.93898 0.94248 0.88272 0.87005 0.90500 0.89696 0.85779 0.89469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 10.18 71.24 0.73 -0.07 16 2 C 0.23 5.17 7.88 138.20 1.09 6.26 16 3 N -0.53 -14.79 11.20 -187.39 -2.10 -16.89 16 4 C 0.04 1.09 11.37 84.10 0.96 2.04 16 5 C -0.11 -3.19 6.91 40.01 0.28 -2.91 16 6 C 0.59 19.27 7.78 86.47 0.67 19.95 16 7 O -0.58 -21.66 14.86 -4.30 -0.06 -21.72 16 8 N -0.70 -20.88 5.54 -470.74 -2.61 -23.48 16 9 C 0.22 6.96 5.96 85.63 0.51 7.47 16 10 C -0.28 -9.15 5.46 -20.25 -0.11 -9.26 16 11 C 0.07 2.03 11.97 85.26 1.02 3.05 16 12 N -0.33 -11.11 12.61 -56.80 -0.72 -11.82 16 13 N -0.37 -13.40 4.03 -334.04 -1.35 -14.75 16 14 C 0.10 3.80 6.71 41.31 0.28 4.08 16 15 C 0.25 11.66 5.05 85.55 0.43 12.09 16 16 N -0.62 -28.95 3.00 -701.12 -2.11 -31.05 16 17 C -0.27 -13.83 9.65 84.04 0.81 -13.02 16 18 H 0.08 3.80 7.85 -2.91 -0.02 3.77 16 19 C -0.04 -2.16 5.11 84.86 0.43 -1.72 16 20 N -0.93 -52.80 11.01 21.65 0.24 -52.56 16 21 Si 0.97 43.41 29.56 68.60 2.03 45.43 16 22 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 23 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16 24 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 25 C 0.13 4.65 6.49 86.35 0.56 5.21 16 26 C 0.12 3.76 7.44 86.46 0.64 4.40 16 27 N -0.43 -10.56 3.17 -524.95 -1.67 -12.23 16 28 C 0.06 1.13 10.48 127.77 1.34 2.47 16 29 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 31 H 0.10 0.61 7.12 -2.39 -0.02 0.59 16 32 H 0.19 4.50 7.47 -2.91 -0.02 4.48 16 33 H 0.41 11.15 7.41 -92.71 -0.69 10.47 16 34 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.22 4.40 8.06 -2.91 -0.02 4.38 16 37 H 0.03 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.07 3.82 6.57 -2.39 -0.02 3.81 16 39 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 40 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.10 3.28 7.94 -2.39 -0.02 3.26 16 42 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 43 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 44 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 45 H 0.12 1.14 7.15 -2.39 -0.02 1.13 16 46 H 0.09 1.95 6.38 -2.39 -0.02 1.94 16 Total: -1.00 -72.98 382.29 1.64 -71.35 By element: Atomic # 1 Polarization: 27.36 SS G_CDS: 0.34 Total: 27.70 kcal Atomic # 6 Polarization: 30.40 SS G_CDS: 9.64 Total: 40.04 kcal Atomic # 7 Polarization: -152.49 SS G_CDS: -10.30 Total: -162.79 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: -0.06 Total: -21.72 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -72.98 1.64 -71.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069871340.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.967 kcal (2) G-P(sol) polarization free energy of solvation -72.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds