Wall clock time and date at job start Wed Apr 1 2020 02:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34495 * 125.57097 * 2 1 4 4 C 1.46689 * 106.33307 * 180.14139 * 3 2 1 5 5 C 1.47260 * 126.94155 * 179.82864 * 4 3 2 6 6 O 1.21625 * 120.00229 * 179.69339 * 5 4 3 7 7 N 1.34775 * 119.99854 * 359.68988 * 5 4 3 8 8 C 1.46505 * 119.99997 * 179.97438 * 7 5 4 9 9 H 1.09005 * 110.77666 * 31.76087 * 8 7 5 10 10 C 1.54322 * 110.71859 * 268.52198 * 8 7 5 11 11 N 1.47021 * 107.26863 * 219.43987 * 10 8 7 12 12 C 1.36940 * 125.64450 * 178.98786 * 11 10 8 13 13 H 1.08008 * 119.99841 * 174.82096 * 12 11 10 14 14 C 1.38811 * 120.00127 * 354.81405 * 12 11 10 15 15 N 1.31614 * 120.00131 * 7.05844 * 14 12 11 16 16 Si 1.86800 * 119.99909 * 187.05532 * 14 12 11 17 17 H 1.48497 * 109.47188 * 94.98822 * 16 14 12 18 18 H 1.48501 * 109.47178 * 214.98925 * 16 14 12 19 19 H 1.48499 * 109.47085 * 334.98794 * 16 14 12 20 20 C 1.47420 * 108.70362 * 358.94665 * 11 10 8 21 21 C 1.54901 * 104.83672 * 24.12600 * 20 11 10 22 22 H 1.09000 * 111.04079 * 204.90870 * 21 20 11 23 23 N 1.46500 * 111.00553 * 81.06214 * 21 20 11 24 24 C 1.35304 * 125.86985 * 332.81049 * 23 21 20 25 25 C 1.35353 * 106.17856 * 180.02562 * 24 23 21 26 26 N 1.33772 * 106.49476 * 0.02562 * 25 24 23 27 27 N 1.28640 * 108.88270 * 359.97438 * 26 25 24 28 28 C 1.36765 * 106.11281 * 359.57151 * 4 3 2 29 29 C 1.50702 * 125.79878 * 180.23469 * 28 4 3 30 30 N 1.34658 * 108.40250 * 0.25658 * 28 4 3 31 31 H 0.97000 * 124.85164 * 180.02562 * 30 28 4 32 32 H 1.09001 * 109.47326 * 270.35597 * 1 2 3 33 33 H 1.08993 * 109.47256 * 30.36543 * 1 2 3 34 34 H 1.09004 * 109.46707 * 150.36096 * 1 2 3 35 35 H 1.08000 * 126.82902 * 359.97438 * 3 2 1 36 36 H 0.97002 * 120.00078 * 359.97438 * 7 5 4 37 37 H 1.09001 * 109.88431 * 338.85974 * 10 8 7 38 38 H 1.09002 * 109.87999 * 99.87507 * 10 8 7 39 39 H 0.97003 * 120.00086 * 179.97438 * 15 14 12 40 40 H 1.09005 * 110.36401 * 265.28397 * 20 11 10 41 41 H 1.09007 * 110.36658 * 142.96937 * 20 11 10 42 42 H 1.07998 * 126.91299 * 0.02562 * 24 23 21 43 43 H 1.07999 * 126.75255 * 179.97438 * 25 24 23 44 44 H 1.09008 * 109.46898 * 89.99868 * 29 28 4 45 45 H 1.08994 * 109.47714 * 209.99902 * 29 28 4 46 46 H 1.08993 * 109.47395 * 330.00282 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2893 1.0940 0.0000 4 6 3.6743 0.6106 -0.0035 5 6 4.8977 1.4303 -0.0083 6 8 5.9892 0.8938 -0.0052 7 7 4.8078 2.7750 -0.0162 8 6 6.0249 3.5905 -0.0204 9 1 6.8288 3.0827 -0.5535 10 6 6.4571 3.9338 1.4208 11 7 6.9313 5.3254 1.4144 12 6 7.3852 6.0188 2.5046 13 1 7.7909 7.0122 2.3821 14 6 7.3236 5.4450 3.7671 15 7 6.9603 4.1871 3.9012 16 14 7.7566 6.4580 5.2756 17 1 6.5169 7.0274 5.8620 18 1 8.4259 5.5912 6.2786 19 1 8.6714 7.5608 4.8853 20 6 6.8380 5.8504 0.0400 21 6 5.7492 4.9851 -0.6420 22 1 5.8859 4.9648 -1.7232 23 7 4.4074 5.4592 -0.2939 24 6 4.0674 6.1143 0.8401 25 6 2.7395 6.3603 0.7498 26 7 2.3373 5.8498 -0.4194 27 7 3.3492 5.3231 -1.0139 28 6 3.5998 -0.7549 0.0045 29 6 4.7722 -1.7017 0.0096 30 7 2.3008 -1.1098 0.0066 31 1 1.9758 -2.0237 0.0123 32 1 -0.3634 0.0064 1.0276 33 1 -0.3633 0.8866 -0.5195 34 1 -0.3633 -0.8933 -0.5082 35 1 1.9627 2.1234 -0.0004 36 1 3.9373 3.2029 -0.0191 37 1 5.6073 3.8347 2.0962 38 1 7.2604 3.2675 1.7355 39 1 6.9176 3.7860 4.7834 40 1 7.7917 5.7357 -0.4753 41 1 6.5369 6.8979 0.0536 42 1 4.7236 6.3862 1.6536 43 1 2.1254 6.8681 1.4788 44 1 5.0553 -1.9240 1.0386 45 1 4.4956 -2.6254 -0.4986 46 1 5.6138 -1.2407 -0.5071 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070037206.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:24 Heat of formation + Delta-G solvation = 122.175831 kcal Electronic energy + Delta-G solvation = -31176.285923 eV Core-core repulsion = 27104.226882 eV Total energy + Delta-G solvation = -4072.059041 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.23400 -42.33632 -40.62061 -39.10517 -35.75826 -34.80983 -33.54776 -33.44942 -32.21928 -31.80989 -30.44152 -29.98643 -29.11463 -26.77778 -25.80428 -24.20821 -23.57127 -23.34137 -21.93838 -21.58756 -21.19986 -20.71028 -19.14410 -18.54796 -18.11499 -17.50981 -16.88698 -16.65685 -16.34254 -16.18276 -15.87628 -15.66957 -15.33287 -15.11729 -14.94662 -14.74553 -14.37611 -14.16695 -14.06557 -13.94210 -13.86916 -13.53200 -13.31755 -13.06980 -13.05293 -12.94044 -12.82666 -12.70395 -12.51837 -12.43672 -12.22264 -12.04130 -11.87390 -11.80232 -11.10217 -10.95769 -10.72388 -10.23912 -10.16670 -9.80332 -9.00973 -8.98571 -7.86102 -5.24851 0.66117 0.71266 1.36346 1.37584 1.50131 1.50718 1.59407 1.67308 2.00817 2.36432 2.49536 2.50438 3.19030 3.34815 3.43711 3.56673 3.77591 3.80991 3.91009 3.94966 4.10140 4.20948 4.24455 4.32484 4.45152 4.48009 4.48566 4.60715 4.69483 4.70138 4.79628 4.81617 4.82984 4.87065 5.05258 5.12215 5.17412 5.31091 5.32971 5.42976 5.56080 5.70239 5.73065 5.76460 5.93592 6.10113 6.48318 6.63369 7.02063 7.25802 7.57117 7.69979 8.30757 9.22979 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.010557 B = 0.003975 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.585560 B = 7042.770617 C = 8100.840516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.027 3.973 3 C -0.191 4.191 4 C -0.271 4.271 5 C 0.585 3.415 6 O -0.580 6.580 7 N -0.708 5.708 8 C 0.122 3.878 9 H 0.113 0.887 10 C 0.191 3.809 11 N -0.614 5.614 12 C -0.239 4.239 13 H 0.096 0.904 14 C -0.054 4.054 15 N -0.946 5.946 16 Si 0.972 3.028 17 H -0.286 1.286 18 H -0.305 1.305 19 H -0.264 1.264 20 C 0.129 3.871 21 C 0.125 3.875 22 H 0.155 0.845 23 N -0.273 5.273 24 C -0.019 4.019 25 C -0.065 4.065 26 N -0.290 5.290 27 N -0.112 5.112 28 C 0.109 3.891 29 C -0.090 4.090 30 N -0.531 5.531 31 H 0.433 0.567 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.132 0.868 36 H 0.399 0.601 37 H 0.021 0.979 38 H 0.005 0.995 39 H 0.244 0.756 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.187 0.813 43 H 0.213 0.787 44 H 0.077 0.923 45 H 0.099 0.901 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.550 -7.274 -9.658 16.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.083 4.083 3 C -0.215 4.215 4 C -0.281 4.281 5 C 0.377 3.623 6 O -0.462 6.462 7 N -0.358 5.358 8 C 0.014 3.986 9 H 0.131 0.869 10 C 0.064 3.936 11 N -0.341 5.341 12 C -0.367 4.367 13 H 0.113 0.887 14 C -0.248 4.248 15 N -0.594 5.594 16 Si 0.801 3.199 17 H -0.213 1.213 18 H -0.233 1.233 19 H -0.189 1.189 20 C 0.003 3.997 21 C 0.022 3.978 22 H 0.172 0.828 23 N -0.066 5.066 24 C -0.171 4.171 25 C -0.222 4.222 26 N -0.156 5.156 27 N -0.091 5.091 28 C -0.010 4.010 29 C -0.147 4.147 30 N -0.129 5.129 31 H 0.274 0.726 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.150 0.850 36 H 0.235 0.765 37 H 0.039 0.961 38 H 0.023 0.977 39 H 0.054 0.946 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.204 0.796 43 H 0.230 0.770 44 H 0.096 0.904 45 H 0.118 0.882 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.408 -8.327 -10.794 17.776 hybrid contribution 0.696 0.672 2.401 2.588 sum -10.711 -7.655 -8.394 15.614 Atomic orbital electron populations 1.20450 0.84715 1.04802 1.03859 1.20649 0.95026 0.85112 1.07511 1.21833 0.90749 0.98466 1.10411 1.20166 0.92725 0.93547 1.21612 1.17790 0.88429 0.81703 0.74414 1.90685 1.29843 1.72746 1.52966 1.45559 1.08968 1.05913 1.75400 1.22535 0.88442 0.89459 0.98178 0.86906 1.21121 0.96394 0.85489 0.90594 1.44616 1.76048 1.09595 1.03867 1.19404 1.34195 0.98550 0.84524 0.88654 1.25589 1.01890 0.96957 1.00352 1.70216 1.54755 1.12528 1.21886 0.85157 0.77619 0.77744 0.79378 1.21264 1.23265 1.18868 1.22137 0.95307 0.96831 0.85472 1.23384 0.77377 0.94187 1.02888 0.82772 1.47288 1.09458 1.36454 1.13404 1.24063 0.98453 1.01061 0.93512 1.23992 0.93567 1.06680 0.97967 1.75003 1.20941 1.12224 1.07427 1.78207 0.89141 1.21425 1.20304 1.20455 0.86380 0.93563 1.00647 1.20553 0.93297 0.97169 1.03714 1.41439 1.04105 1.09651 1.57746 0.72597 0.89944 0.89576 0.89159 0.85030 0.76499 0.96115 0.97682 0.94637 0.90462 0.90870 0.79634 0.77021 0.90418 0.88209 0.90418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.06 10.41 71.23 0.74 -0.32 16 2 C 0.03 0.58 7.13 40.98 0.29 0.87 16 3 C -0.19 -5.66 10.45 23.62 0.25 -5.41 16 4 C -0.27 -9.21 6.29 -19.04 -0.12 -9.33 16 5 C 0.59 23.51 7.81 86.62 0.68 24.19 16 6 O -0.58 -25.97 14.46 -4.11 -0.06 -26.03 16 7 N -0.71 -27.14 5.06 -440.31 -2.23 -29.37 16 8 C 0.12 4.65 3.19 46.18 0.15 4.80 16 9 H 0.11 4.31 7.55 -2.38 -0.02 4.30 16 10 C 0.19 9.16 4.76 86.73 0.41 9.57 16 11 N -0.61 -27.65 2.23 -691.99 -1.55 -29.19 16 12 C -0.24 -11.88 10.06 84.03 0.84 -11.04 16 13 H 0.10 4.43 7.84 -2.91 -0.02 4.41 16 14 C -0.05 -2.86 5.48 84.86 0.46 -2.40 16 15 N -0.95 -55.41 10.36 21.65 0.22 -55.18 16 16 Si 0.97 43.38 29.56 68.60 2.03 45.41 16 17 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 18 H -0.31 -14.25 7.11 99.48 0.71 -13.54 16 19 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 20 C 0.13 4.32 6.21 86.85 0.54 4.86 16 21 C 0.13 3.94 4.06 46.38 0.19 4.13 16 22 H 0.15 3.85 8.14 -2.39 -0.02 3.83 16 23 N -0.27 -9.08 2.43 -320.60 -0.78 -9.86 16 24 C -0.02 -0.66 10.01 83.49 0.84 0.17 16 25 C -0.07 -2.04 12.05 83.73 1.01 -1.03 16 26 N -0.29 -9.86 12.41 -58.26 -0.72 -10.58 16 27 N -0.11 -3.84 12.27 37.02 0.45 -3.38 16 28 C 0.11 2.93 7.17 41.78 0.30 3.23 16 29 C -0.09 -2.09 9.88 71.24 0.70 -1.38 16 30 N -0.53 -10.25 5.90 -171.07 -1.01 -11.26 16 31 H 0.43 4.62 8.96 -92.71 -0.83 3.79 16 32 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.13 4.03 7.70 -2.91 -0.02 4.00 16 36 H 0.40 15.00 5.92 -92.71 -0.55 14.45 16 37 H 0.02 1.15 7.18 -2.39 -0.02 1.13 16 38 H 0.00 0.29 7.61 -2.39 -0.02 0.27 16 39 H 0.24 14.26 8.31 -92.71 -0.77 13.49 16 40 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 41 H 0.07 2.31 7.86 -2.38 -0.02 2.29 16 42 H 0.19 7.17 6.81 -2.91 -0.02 7.15 16 43 H 0.21 5.09 8.06 -2.91 -0.02 5.07 16 44 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 45 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.08 2.25 6.47 -2.39 -0.02 2.23 16 Total: -1.00 -72.82 378.22 3.30 -69.51 By element: Atomic # 1 Polarization: 39.37 SS G_CDS: -0.34 Total: 39.03 kcal Atomic # 6 Polarization: 13.64 SS G_CDS: 7.28 Total: 20.92 kcal Atomic # 7 Polarization: -143.23 SS G_CDS: -5.61 Total: -148.84 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -0.06 Total: -26.03 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -72.82 3.30 -69.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070037206.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.689 kcal (2) G-P(sol) polarization free energy of solvation -72.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds