Wall clock time and date at job start Wed Apr 1 2020 03:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35460 * 125.56276 * 2 1 4 4 C 1.39835 * 107.86920 * 180.02562 * 3 2 1 5 5 C 1.50693 * 126.46098 * 180.02562 * 4 3 2 6 6 C 1.37875 * 107.08092 * 0.02562 * 4 3 2 7 7 C 1.46673 * 126.23092 * 180.02562 * 6 4 3 8 8 O 1.21699 * 120.00096 * 353.56034 * 7 6 4 9 9 N 1.34782 * 120.00425 * 173.56273 * 7 6 4 10 10 C 1.47424 * 125.64181 * 354.48567 * 9 7 6 11 11 C 1.55393 * 104.87226 * 204.09646 * 10 9 7 12 12 H 1.08997 * 111.02322 * 80.98230 * 11 10 9 13 13 N 1.46504 * 111.19062 * 204.98019 * 11 10 9 14 14 C 1.36934 * 119.99633 * 267.04031 * 13 11 10 15 15 H 1.07998 * 120.00584 * 359.97438 * 14 13 11 16 16 C 1.38817 * 119.99455 * 179.97438 * 14 13 11 17 17 N 1.31615 * 120.00135 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99839 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46845 * 60.00384 * 18 16 14 20 20 H 1.48501 * 109.46765 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47008 * 300.00073 * 18 16 14 22 22 C 1.55159 * 101.36506 * 323.01668 * 11 10 9 23 23 H 1.08991 * 110.72002 * 153.94501 * 22 11 10 24 24 N 1.46498 * 110.72044 * 277.04574 * 22 11 10 25 25 C 1.35309 * 125.87439 * 82.85214 * 24 22 11 26 26 C 1.35351 * 106.18133 * 180.18896 * 25 24 22 27 27 N 1.33774 * 106.49311 * 359.58846 * 26 25 24 28 28 N 1.28638 * 108.88649 * 0.26684 * 27 26 25 29 29 C 1.47016 * 125.65378 * 174.44034 * 9 7 6 30 30 N 1.35535 * 125.57055 * 180.35369 * 2 1 3 31 31 H 0.97000 * 125.67435 * 359.97438 * 30 2 1 32 32 H 1.08996 * 109.47302 * 89.97654 * 1 2 3 33 33 H 1.09007 * 109.46133 * 209.97435 * 1 2 3 34 34 H 1.08999 * 109.46891 * 329.97244 * 1 2 3 35 35 H 1.07998 * 126.06377 * 0.07152 * 3 2 1 36 36 H 1.08996 * 109.46936 * 269.96070 * 5 4 3 37 37 H 1.09007 * 109.47022 * 29.95915 * 5 4 3 38 38 H 1.08993 * 109.47278 * 149.95974 * 5 4 3 39 39 H 1.09003 * 110.36778 * 322.92715 * 10 9 7 40 40 H 1.09002 * 110.37235 * 85.14558 * 10 9 7 41 41 H 0.96995 * 119.99751 * 87.03188 * 13 11 10 42 42 H 0.96999 * 119.99895 * 179.97438 * 17 16 14 43 43 H 1.08008 * 126.90714 * 0.04138 * 25 24 22 44 44 H 1.07997 * 126.75583 * 179.85371 * 26 25 24 45 45 H 1.09001 * 109.87920 * 59.56150 * 29 9 7 46 46 H 1.09002 * 110.01339 * 298.47097 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 3.6270 0.6769 -0.0006 5 6 4.8485 1.5594 -0.0003 6 6 3.6123 -0.7017 -0.0015 7 6 4.7861 -1.5812 -0.0019 8 8 5.9011 -1.1079 -0.1195 9 7 4.6300 -2.9136 0.1280 10 6 3.3564 -3.6077 0.3920 11 6 3.7649 -4.9532 1.0532 12 1 3.9743 -4.8196 2.1145 13 7 2.7380 -5.9777 0.8476 14 6 1.7597 -6.1646 1.7874 15 1 1.7454 -5.5572 2.6802 16 6 0.7864 -7.1350 1.5923 17 7 0.8036 -7.8749 0.5039 18 14 -0.5478 -7.3906 2.8746 19 1 -1.3220 -6.1342 3.0406 20 1 -1.4572 -8.4782 2.4325 21 1 0.0755 -7.7629 4.1700 22 6 5.0592 -5.2982 0.2701 23 1 5.7158 -5.9291 0.8691 24 7 4.7373 -5.9489 -1.0023 25 6 4.3938 -5.3199 -2.1500 26 6 4.1800 -6.2943 -3.0648 27 7 4.4091 -7.4562 -2.4426 28 7 4.7372 -7.2173 -1.2219 29 6 5.7012 -3.9156 0.0291 30 7 2.2954 -1.1024 -0.0068 31 1 1.9835 -2.0209 -0.0121 32 1 -0.3634 0.0004 -1.0276 33 1 -0.3632 -0.8903 0.5135 34 1 -0.3633 0.8897 0.5143 35 1 1.9544 2.1269 0.0011 36 1 5.1432 1.7723 -1.0278 37 1 4.6218 2.4936 0.5137 38 1 5.6641 1.0507 0.5136 39 1 2.7395 -3.0223 1.0739 40 1 2.8224 -3.7887 -0.5409 41 1 2.7511 -6.5233 0.0459 42 1 0.1237 -8.5532 0.3678 43 1 4.3055 -4.2546 -2.3044 44 1 3.8868 -6.1601 -4.0955 45 1 6.4606 -3.7224 0.7869 46 1 6.1514 -3.8838 -0.9631 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070219909.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:14 Heat of formation + Delta-G solvation = 143.744437 kcal Electronic energy + Delta-G solvation = -31145.408262 eV Core-core repulsion = 27074.284505 eV Total energy + Delta-G solvation = -4071.123756 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.96096 -41.57011 -39.63310 -37.77082 -34.49646 -33.76885 -32.75594 -31.76700 -31.38576 -30.64265 -29.56549 -28.13753 -27.58139 -26.56410 -24.30046 -23.73383 -22.32019 -21.89986 -21.05298 -20.34877 -20.11067 -19.08794 -17.90796 -17.76735 -17.21397 -16.11201 -15.81268 -15.69079 -15.12575 -14.87447 -14.75282 -14.59454 -13.98223 -13.88470 -13.57636 -13.44335 -13.32635 -13.19940 -13.08118 -13.00905 -12.87607 -12.54964 -12.42314 -12.25881 -12.09223 -11.74330 -11.51632 -11.40220 -11.25568 -11.10043 -11.00402 -10.54005 -10.36078 -10.10954 -10.01025 -9.71158 -9.26124 -8.98396 -8.89146 -8.76054 -8.03544 -7.39299 -6.03073 -3.40550 1.40906 1.97183 2.53844 2.61439 2.77151 3.01449 3.11165 3.26007 3.31672 3.32866 3.34096 4.02161 4.33833 4.44700 4.67698 4.72551 4.79373 4.82774 5.01003 5.04987 5.13381 5.15641 5.29618 5.36406 5.37131 5.38238 5.42563 5.49698 5.57950 5.66535 5.68101 5.71906 5.73827 5.80791 5.84908 5.98837 6.08692 6.11671 6.17806 6.34744 6.49218 6.74801 6.92526 6.93082 7.31008 7.38561 7.41024 8.05656 8.09309 8.93980 9.22207 9.68142 10.02772 11.16122 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.008844 B = 0.004471 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3165.138932 B = 6260.749168 C = 8298.928607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.055 3.945 3 C -0.213 4.213 4 C -0.073 4.073 5 C -0.086 4.086 6 C -0.057 4.057 7 C 0.607 3.393 8 O -0.532 6.532 9 N -0.619 5.619 10 C 0.051 3.949 11 C 0.172 3.828 12 H 0.096 0.904 13 N -0.702 5.702 14 C -0.274 4.274 15 H 0.075 0.925 16 C 0.005 3.995 17 N -0.913 5.913 18 Si 0.911 3.089 19 H -0.284 1.284 20 H -0.288 1.288 21 H -0.282 1.282 22 C 0.112 3.888 23 H 0.135 0.865 24 N -0.270 5.270 25 C -0.053 4.053 26 C -0.053 4.053 27 N -0.271 5.271 28 N -0.062 5.062 29 C 0.109 3.891 30 N -0.537 5.537 31 H 0.421 0.579 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.140 0.860 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.394 0.606 42 H 0.262 0.738 43 H 0.176 0.824 44 H 0.183 0.817 45 H 0.097 0.903 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.294 15.995 -2.431 16.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.063 4.063 3 C -0.237 4.237 4 C -0.082 4.082 5 C -0.143 4.143 6 C -0.170 4.170 7 C 0.398 3.602 8 O -0.409 6.409 9 N -0.354 5.354 10 C -0.076 4.076 11 C 0.056 3.944 12 H 0.114 0.886 13 N -0.342 5.342 14 C -0.404 4.404 15 H 0.093 0.907 16 C -0.194 4.194 17 N -0.557 5.557 18 Si 0.741 3.259 19 H -0.210 1.210 20 H -0.214 1.214 21 H -0.208 1.208 22 C 0.008 3.992 23 H 0.152 0.848 24 N -0.064 5.064 25 C -0.204 4.204 26 C -0.210 4.210 27 N -0.137 5.137 28 N -0.042 5.042 29 C -0.015 4.015 30 N -0.138 5.138 31 H 0.265 0.735 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.158 0.842 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.230 0.770 42 H 0.072 0.928 43 H 0.194 0.806 44 H 0.200 0.800 45 H 0.115 0.885 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.968 14.626 -1.762 15.547 hybrid contribution -1.408 0.382 -0.050 1.459 sum 3.561 15.008 -1.812 15.531 Atomic orbital electron populations 1.20447 0.87687 1.03810 1.03121 1.20604 0.93804 0.86414 1.05500 1.20531 0.91728 0.97829 1.13610 1.19873 0.95453 0.90835 1.02041 1.20288 0.94547 0.97399 1.02057 1.19969 0.82907 0.93770 1.20310 1.16707 0.87535 0.79499 0.76435 1.90804 1.24599 1.74244 1.51256 1.48362 1.10197 1.04937 1.71941 1.23956 0.85742 0.96929 1.00947 1.21698 0.87254 0.88062 0.97425 0.88604 1.42356 1.28602 1.37989 1.25224 1.19125 1.04117 1.16942 1.00225 0.90711 1.24859 0.99156 0.97853 0.97538 1.69685 1.36088 1.23680 1.26233 0.86242 0.81354 0.77538 0.80790 1.21015 1.21389 1.20825 1.23205 1.01044 0.93111 0.81835 0.84772 1.47243 1.43642 1.05797 1.09731 1.23388 1.09016 1.01078 0.86872 1.23465 1.07316 0.88668 1.01601 1.75119 1.15073 1.24504 0.98962 1.78410 1.18282 0.95557 1.11941 1.22143 0.90634 0.84925 1.03782 1.42692 1.05420 1.09270 1.56456 0.73527 0.90565 0.91137 0.89792 0.84170 0.91624 0.92165 0.90508 0.90344 0.91007 0.76984 0.92816 0.80635 0.79963 0.88513 0.90092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.78 10.41 36.01 0.37 -0.40 16 2 C 0.06 0.62 7.13 -81.95 -0.58 0.04 16 3 C -0.21 -2.45 10.66 -39.98 -0.43 -2.88 16 4 C -0.07 -0.96 6.21 -104.16 -0.65 -1.61 16 5 C -0.09 -0.99 9.77 36.00 0.35 -0.64 16 6 C -0.06 -0.80 6.82 -81.98 -0.56 -1.36 16 7 C 0.61 8.92 7.81 -12.85 -0.10 8.82 16 8 O -0.53 -8.83 15.23 5.19 0.08 -8.75 16 9 N -0.62 -8.19 3.33 -171.75 -0.57 -8.76 16 10 C 0.05 0.73 4.52 -2.27 -0.01 0.72 16 11 C 0.17 2.82 3.60 -65.52 -0.24 2.58 16 12 H 0.10 1.52 8.09 -51.93 -0.42 1.10 16 13 N -0.70 -15.61 5.22 -51.10 -0.27 -15.88 16 14 C -0.27 -6.83 9.96 -15.06 -0.15 -6.98 16 15 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 16 C 0.01 0.13 5.50 -17.43 -0.10 0.04 16 17 N -0.91 -26.30 13.06 55.49 0.72 -25.57 16 18 Si 0.91 20.84 29.55 -169.99 -5.02 15.81 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 C 0.11 1.59 3.96 -66.10 -0.26 1.33 16 23 H 0.13 1.74 8.14 -51.93 -0.42 1.31 16 24 N -0.27 -4.46 2.31 -52.99 -0.12 -4.58 16 25 C -0.05 -0.79 9.26 -17.05 -0.16 -0.95 16 26 C -0.05 -0.86 12.05 -17.74 -0.21 -1.07 16 27 N -0.27 -5.37 12.41 30.23 0.38 -5.00 16 28 N -0.06 -1.25 12.43 60.35 0.75 -0.50 16 29 C 0.11 1.32 5.92 -3.07 -0.02 1.31 16 30 N -0.54 -6.70 5.36 -5.69 -0.03 -6.73 16 31 H 0.42 5.13 5.35 -40.82 -0.22 4.91 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.08 1.00 6.64 -51.93 -0.34 0.65 16 39 H 0.08 1.10 6.21 -51.93 -0.32 0.78 16 40 H 0.07 1.09 7.10 -51.93 -0.37 0.72 16 41 H 0.39 9.76 6.11 -40.82 -0.25 9.51 16 42 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.18 2.22 7.70 -52.48 -0.40 1.82 16 44 H 0.18 2.24 8.06 -52.49 -0.42 1.82 16 45 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.08 0.97 7.29 -51.93 -0.38 0.59 16 LS Contribution 377.52 15.07 5.69 5.69 Total: -1.00 -32.37 377.52 -7.19 -39.55 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: -6.06 Total: 15.76 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -2.73 Total: -1.04 kcal Atomic # 7 Polarization: -67.88 SS G_CDS: 0.86 Total: -67.02 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.08 Total: -8.75 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.37 -7.19 -39.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070219909.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.297 kcal (2) G-P(sol) polarization free energy of solvation -32.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds