Wall clock time and date at job start Wed Apr 1 2020 03:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35460 * 125.56276 * 2 1 4 4 C 1.39835 * 107.86920 * 180.02562 * 3 2 1 5 5 C 1.50693 * 126.46098 * 180.02562 * 4 3 2 6 6 C 1.37875 * 107.08092 * 0.02562 * 4 3 2 7 7 C 1.46673 * 126.23092 * 180.02562 * 6 4 3 8 8 O 1.21699 * 120.00096 * 353.56034 * 7 6 4 9 9 N 1.34782 * 120.00425 * 173.56273 * 7 6 4 10 10 C 1.47424 * 125.64181 * 354.48567 * 9 7 6 11 11 C 1.55393 * 104.87226 * 204.09646 * 10 9 7 12 12 H 1.08997 * 111.02322 * 80.98230 * 11 10 9 13 13 N 1.46504 * 111.19062 * 204.98019 * 11 10 9 14 14 C 1.36934 * 119.99633 * 267.04031 * 13 11 10 15 15 H 1.07998 * 120.00584 * 359.97438 * 14 13 11 16 16 C 1.38817 * 119.99455 * 179.97438 * 14 13 11 17 17 N 1.31615 * 120.00135 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99839 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46845 * 60.00384 * 18 16 14 20 20 H 1.48501 * 109.46765 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47008 * 300.00073 * 18 16 14 22 22 C 1.55159 * 101.36506 * 323.01668 * 11 10 9 23 23 H 1.08991 * 110.72002 * 153.94501 * 22 11 10 24 24 N 1.46498 * 110.72044 * 277.04574 * 22 11 10 25 25 C 1.35309 * 125.87439 * 82.85214 * 24 22 11 26 26 C 1.35351 * 106.18133 * 180.18896 * 25 24 22 27 27 N 1.33774 * 106.49311 * 359.58846 * 26 25 24 28 28 N 1.28638 * 108.88649 * 0.26684 * 27 26 25 29 29 C 1.47016 * 125.65378 * 174.44034 * 9 7 6 30 30 N 1.35535 * 125.57055 * 180.35369 * 2 1 3 31 31 H 0.97000 * 125.67435 * 359.97438 * 30 2 1 32 32 H 1.08996 * 109.47302 * 89.97654 * 1 2 3 33 33 H 1.09007 * 109.46133 * 209.97435 * 1 2 3 34 34 H 1.08999 * 109.46891 * 329.97244 * 1 2 3 35 35 H 1.07998 * 126.06377 * 0.07152 * 3 2 1 36 36 H 1.08996 * 109.46936 * 269.96070 * 5 4 3 37 37 H 1.09007 * 109.47022 * 29.95915 * 5 4 3 38 38 H 1.08993 * 109.47278 * 149.95974 * 5 4 3 39 39 H 1.09003 * 110.36778 * 322.92715 * 10 9 7 40 40 H 1.09002 * 110.37235 * 85.14558 * 10 9 7 41 41 H 0.96995 * 119.99751 * 87.03188 * 13 11 10 42 42 H 0.96999 * 119.99895 * 179.97438 * 17 16 14 43 43 H 1.08008 * 126.90714 * 0.04138 * 25 24 22 44 44 H 1.07997 * 126.75583 * 179.85371 * 26 25 24 45 45 H 1.09001 * 109.87920 * 59.56150 * 29 9 7 46 46 H 1.09002 * 110.01339 * 298.47097 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 3.6270 0.6769 -0.0006 5 6 4.8485 1.5594 -0.0003 6 6 3.6123 -0.7017 -0.0015 7 6 4.7861 -1.5812 -0.0019 8 8 5.9011 -1.1079 -0.1195 9 7 4.6300 -2.9136 0.1280 10 6 3.3564 -3.6077 0.3920 11 6 3.7649 -4.9532 1.0532 12 1 3.9743 -4.8196 2.1145 13 7 2.7380 -5.9777 0.8476 14 6 1.7597 -6.1646 1.7874 15 1 1.7454 -5.5572 2.6802 16 6 0.7864 -7.1350 1.5923 17 7 0.8036 -7.8749 0.5039 18 14 -0.5478 -7.3906 2.8746 19 1 -1.3220 -6.1342 3.0406 20 1 -1.4572 -8.4782 2.4325 21 1 0.0755 -7.7629 4.1700 22 6 5.0592 -5.2982 0.2701 23 1 5.7158 -5.9291 0.8691 24 7 4.7373 -5.9489 -1.0023 25 6 4.3938 -5.3199 -2.1500 26 6 4.1800 -6.2943 -3.0648 27 7 4.4091 -7.4562 -2.4426 28 7 4.7372 -7.2173 -1.2219 29 6 5.7012 -3.9156 0.0291 30 7 2.2954 -1.1024 -0.0068 31 1 1.9835 -2.0209 -0.0121 32 1 -0.3634 0.0004 -1.0276 33 1 -0.3632 -0.8903 0.5135 34 1 -0.3633 0.8897 0.5143 35 1 1.9544 2.1269 0.0011 36 1 5.1432 1.7723 -1.0278 37 1 4.6218 2.4936 0.5137 38 1 5.6641 1.0507 0.5136 39 1 2.7395 -3.0223 1.0739 40 1 2.8224 -3.7887 -0.5409 41 1 2.7511 -6.5233 0.0459 42 1 0.1237 -8.5532 0.3678 43 1 4.3055 -4.2546 -2.3044 44 1 3.8868 -6.1601 -4.0955 45 1 6.4606 -3.7224 0.7869 46 1 6.1514 -3.8838 -0.9631 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070219909.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:13 Heat of formation + Delta-G solvation = 122.212984 kcal Electronic energy + Delta-G solvation = -31146.341935 eV Core-core repulsion = 27074.284505 eV Total energy + Delta-G solvation = -4072.057430 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.27247 -42.53392 -40.76922 -39.00198 -36.08974 -35.10151 -33.67677 -33.14271 -32.63846 -31.92897 -30.77836 -29.44540 -28.51169 -27.60164 -25.90065 -25.01315 -23.67906 -23.18973 -22.14083 -21.37751 -21.25919 -20.06744 -19.58384 -18.94663 -18.44819 -17.39660 -17.00852 -16.94996 -16.45814 -16.14973 -15.98063 -15.72648 -15.37320 -15.23083 -14.85713 -14.70574 -14.43103 -14.30646 -14.01683 -13.92025 -13.79958 -13.70559 -13.46374 -13.13779 -13.05537 -13.00104 -12.90661 -12.76440 -12.63219 -12.51875 -12.39346 -12.19928 -11.95225 -11.84740 -11.30512 -11.10218 -10.93417 -10.28934 -10.01744 -9.69841 -9.23684 -8.96992 -8.01593 -5.37214 0.39670 0.68114 1.33514 1.45623 1.48174 1.54400 1.65600 1.68997 1.71956 2.15982 2.27244 2.47864 2.90119 3.13990 3.42523 3.52079 3.62339 3.67238 3.88576 3.94471 3.96535 4.10522 4.13603 4.17667 4.28209 4.30429 4.38038 4.48945 4.52312 4.62287 4.76481 4.78066 4.83361 4.83705 4.86642 4.94086 5.03700 5.12322 5.24813 5.27285 5.44111 5.46238 5.67440 5.84185 5.99589 6.13437 6.22949 6.44406 6.94967 7.23374 7.59063 7.88568 8.11643 9.18902 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.008844 B = 0.004471 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3165.138932 B = 6260.749168 C = 8298.928607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.059 3.941 3 C -0.219 4.219 4 C -0.082 4.082 5 C -0.083 4.083 6 C -0.087 4.087 7 C 0.608 3.392 8 O -0.554 6.554 9 N -0.613 5.613 10 C 0.072 3.928 11 C 0.163 3.837 12 H 0.107 0.893 13 N -0.719 5.719 14 C -0.258 4.258 15 H 0.089 0.911 16 C -0.060 4.060 17 N -0.959 5.959 18 Si 0.972 3.028 19 H -0.271 1.271 20 H -0.302 1.302 21 H -0.278 1.278 22 C 0.115 3.885 23 H 0.146 0.854 24 N -0.266 5.266 25 C -0.043 4.043 26 C -0.059 4.059 27 N -0.308 5.308 28 N -0.105 5.105 29 C 0.117 3.883 30 N -0.540 5.540 31 H 0.420 0.580 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.104 0.896 35 H 0.164 0.836 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.059 0.941 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.380 0.620 42 H 0.251 0.749 43 H 0.202 0.798 44 H 0.215 0.785 45 H 0.118 0.882 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.030 18.783 -1.904 19.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.060 4.060 3 C -0.243 4.243 4 C -0.091 4.091 5 C -0.140 4.140 6 C -0.199 4.199 7 C 0.401 3.599 8 O -0.434 6.434 9 N -0.347 5.347 10 C -0.055 4.055 11 C 0.050 3.950 12 H 0.124 0.876 13 N -0.358 5.358 14 C -0.389 4.389 15 H 0.106 0.894 16 C -0.254 4.254 17 N -0.607 5.607 18 Si 0.800 3.200 19 H -0.197 1.197 20 H -0.229 1.229 21 H -0.204 1.204 22 C 0.011 3.989 23 H 0.164 0.836 24 N -0.060 5.060 25 C -0.194 4.194 26 C -0.217 4.217 27 N -0.173 5.173 28 N -0.083 5.083 29 C -0.007 4.007 30 N -0.141 5.141 31 H 0.263 0.737 32 H 0.106 0.894 33 H 0.086 0.914 34 H 0.122 0.878 35 H 0.181 0.819 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.078 0.922 39 H 0.101 0.899 40 H 0.083 0.917 41 H 0.214 0.786 42 H 0.060 0.940 43 H 0.219 0.781 44 H 0.232 0.768 45 H 0.136 0.864 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.750 17.458 -1.194 18.132 hybrid contribution -1.271 -0.315 -0.224 1.329 sum 3.478 17.143 -1.418 17.550 Atomic orbital electron populations 1.20571 0.85571 1.04708 1.04135 1.21170 0.95138 0.85964 1.03725 1.20850 0.91000 0.99075 1.13358 1.20241 0.96654 0.90854 1.01360 1.20282 0.93521 0.97894 1.02290 1.19985 0.83206 0.94153 1.22547 1.16813 0.87554 0.79600 0.75979 1.90792 1.25490 1.74528 1.52542 1.48249 1.09906 1.04806 1.71747 1.23514 0.86037 0.95478 1.00455 1.21936 0.86819 0.87586 0.98676 0.87573 1.42447 1.29578 1.39469 1.24334 1.19574 1.03556 1.15368 1.00392 0.89364 1.25598 1.01836 0.98606 0.99344 1.69863 1.37094 1.25112 1.28636 0.85264 0.78886 0.77269 0.78564 1.19661 1.22911 1.20400 1.23307 1.00021 0.94400 0.81145 0.83597 1.47396 1.42835 1.05192 1.10584 1.23798 1.07488 1.02007 0.86089 1.24103 1.06640 0.87771 1.03189 1.75055 1.16247 1.26532 0.99484 1.78344 1.20372 0.97210 1.12422 1.22196 0.90407 0.83068 1.04991 1.42703 1.05161 1.09551 1.56707 0.73675 0.89415 0.91353 0.87777 0.81857 0.91304 0.90064 0.92232 0.89877 0.91663 0.78594 0.94015 0.78135 0.76813 0.86398 0.89357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.27 10.41 71.24 0.74 -0.53 16 2 C 0.06 1.18 7.13 41.34 0.29 1.47 16 3 C -0.22 -4.45 10.66 22.01 0.23 -4.21 16 4 C -0.08 -1.99 6.21 -19.57 -0.12 -2.11 16 5 C -0.08 -1.77 9.77 71.23 0.70 -1.08 16 6 C -0.09 -2.29 6.82 40.35 0.28 -2.01 16 7 C 0.61 16.91 7.81 86.44 0.67 17.58 16 8 O -0.55 -17.67 15.23 -4.35 -0.07 -17.74 16 9 N -0.61 -15.01 3.33 -815.51 -2.71 -17.72 16 10 C 0.07 1.93 4.52 87.03 0.39 2.32 16 11 C 0.16 5.15 3.60 46.55 0.17 5.31 16 12 H 0.11 3.16 8.09 -2.39 -0.02 3.14 16 13 N -0.72 -31.80 5.22 -315.57 -1.65 -33.44 16 14 C -0.26 -12.71 9.96 84.04 0.84 -11.88 16 15 H 0.09 4.01 7.83 -2.91 -0.02 3.99 16 16 C -0.06 -3.20 5.50 84.86 0.47 -2.73 16 17 N -0.96 -56.82 13.06 21.65 0.28 -56.53 16 18 Si 0.97 43.10 29.55 68.60 2.03 45.13 16 19 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 20 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 21 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 22 C 0.11 3.10 3.96 46.18 0.18 3.28 16 23 H 0.15 3.60 8.14 -2.39 -0.02 3.58 16 24 N -0.27 -8.62 2.31 -321.55 -0.74 -9.37 16 25 C -0.04 -1.23 9.26 83.49 0.77 -0.45 16 26 C -0.06 -1.86 12.05 83.73 1.01 -0.86 16 27 N -0.31 -12.42 12.41 -58.26 -0.72 -13.14 16 28 N -0.10 -4.25 12.43 37.02 0.46 -3.79 16 29 C 0.12 2.57 5.92 86.73 0.51 3.09 16 30 N -0.54 -12.47 5.36 -171.93 -0.92 -13.39 16 31 H 0.42 9.56 5.35 -92.71 -0.50 9.06 16 32 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 36 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 38 H 0.06 1.49 6.64 -2.39 -0.02 1.47 16 39 H 0.08 2.19 6.21 -2.39 -0.01 2.17 16 40 H 0.07 1.88 7.10 -2.39 -0.02 1.86 16 41 H 0.38 19.07 6.11 -92.71 -0.57 18.51 16 42 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 43 H 0.20 4.62 7.70 -2.91 -0.02 4.60 16 44 H 0.22 4.93 8.06 -2.91 -0.02 4.91 16 45 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 46 H 0.09 1.90 7.29 -2.39 -0.02 1.88 16 Total: -1.00 -71.57 377.52 3.07 -68.50 By element: Atomic # 1 Polarization: 44.33 SS G_CDS: -0.02 Total: 44.30 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: 7.14 Total: 7.19 kcal Atomic # 7 Polarization: -141.38 SS G_CDS: -6.01 Total: -147.39 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -0.07 Total: -17.74 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -71.57 3.07 -68.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070219909.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.714 kcal (2) G-P(sol) polarization free energy of solvation -71.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds