Wall clock time and date at job start Wed Apr 1 2020 03:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30861 * 125.41702 * 2 1 4 4 C 1.33313 * 109.68333 * 179.73894 * 3 2 1 5 5 C 1.36660 * 107.78977 * 0.37673 * 4 3 2 6 6 C 1.46763 * 126.84825 * 179.89299 * 5 4 3 7 7 O 1.21683 * 119.99840 * 359.68895 * 6 5 4 8 8 N 1.34777 * 120.00153 * 179.69071 * 6 5 4 9 9 C 1.46498 * 119.99828 * 180.27869 * 8 6 5 10 10 C 1.50700 * 109.46769 * 179.72341 * 9 8 6 11 11 C 1.35320 * 126.03812 * 259.68044 * 10 9 8 12 12 N 1.34948 * 107.74713 * 179.87569 * 11 10 9 13 13 H 0.96993 * 126.03978 * 180.15443 * 12 11 10 14 14 N 1.40086 * 107.92249 * 0.39532 * 12 11 10 15 15 C 1.30839 * 108.20523 * 359.75734 * 14 12 11 16 16 C 1.50704 * 125.89574 * 179.97438 * 15 14 12 17 17 H 1.09004 * 110.88212 * 177.59735 * 16 15 14 18 18 C 1.55154 * 111.00553 * 53.67353 * 16 15 14 19 19 C 1.54327 * 102.94426 * 206.42394 * 18 16 15 20 20 N 1.47023 * 107.26848 * 22.19009 * 19 18 16 21 21 C 1.36932 * 125.65061 * 181.02478 * 20 19 18 22 22 H 1.07995 * 120.00646 * 180.02562 * 21 20 19 23 23 C 1.38813 * 119.99742 * 0.04185 * 21 20 19 24 24 N 1.31621 * 119.99933 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00095 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47170 * 60.00466 * 25 23 21 27 27 H 1.48497 * 109.47428 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47386 * 300.00430 * 25 23 21 29 29 C 1.47425 * 108.70518 * 1.05995 * 20 19 18 30 30 N 1.34495 * 125.41796 * 179.97438 * 2 1 3 31 31 H 0.96992 * 126.47835 * 0.02562 * 30 2 1 32 32 H 1.08996 * 109.47564 * 270.02584 * 1 2 3 33 33 H 1.08998 * 109.46991 * 30.03078 * 1 2 3 34 34 H 1.09006 * 109.46855 * 150.02317 * 1 2 3 35 35 H 1.08008 * 126.10550 * 180.28242 * 4 3 2 36 36 H 0.97001 * 119.99727 * 359.97438 * 8 6 5 37 37 H 1.09004 * 109.46963 * 299.72135 * 9 8 6 38 38 H 1.08994 * 109.47567 * 59.72287 * 9 8 6 39 39 H 1.08000 * 126.12308 * 0.03394 * 11 10 9 40 40 H 1.09003 * 110.71674 * 324.78491 * 18 16 15 41 41 H 1.09005 * 110.72320 * 88.05658 * 18 16 15 42 42 H 1.08993 * 109.87857 * 262.77977 * 19 18 16 43 43 H 1.08995 * 110.01561 * 141.67717 * 19 18 16 44 44 H 0.97007 * 119.99754 * 180.02562 * 24 23 21 45 45 H 1.08997 * 110.37129 * 217.02914 * 29 20 19 46 46 H 1.09010 * 110.45891 * 94.75449 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0665 0.0000 4 6 3.5486 0.7050 0.0057 5 6 3.5976 -0.6607 0.0010 6 6 4.8029 -1.4982 0.0023 7 8 5.9038 -0.9799 0.0024 8 7 4.6904 -2.8412 0.0033 9 6 5.8935 -3.6770 0.0108 10 6 5.4953 -5.1305 0.0173 11 6 5.4711 -5.9445 1.0980 12 7 5.0579 -7.1616 0.6871 13 1 4.9433 -7.9447 1.2477 14 7 4.8289 -7.0957 -0.6934 15 6 5.0914 -5.8781 -1.0936 16 6 4.9787 -5.3691 -2.5076 17 1 5.2162 -4.3064 -2.5582 18 6 3.5690 -5.6531 -3.0902 19 6 3.8308 -5.7255 -4.6093 20 7 5.2560 -6.0371 -4.7922 21 6 5.8963 -6.1681 -5.9955 22 1 6.9507 -6.4000 -6.0237 23 6 5.1901 -6.0027 -7.1790 24 7 3.9052 -5.7193 -7.1446 25 14 6.0637 -6.1807 -8.8205 26 1 6.6348 -7.5470 -8.9317 27 1 5.0949 -5.9576 -9.9237 28 1 7.1559 -5.1787 -8.9114 29 6 5.8814 -6.1859 -3.4655 30 7 2.2865 -1.0961 0.0005 31 1 1.9851 -2.0180 0.0006 32 1 -0.3634 0.0005 1.0276 33 1 -0.3633 0.8897 -0.5143 34 1 -0.3633 -0.8903 -0.5135 35 1 4.3978 1.3723 0.0114 36 1 3.8127 -3.2543 0.0036 37 1 6.4874 -3.4670 -0.8787 38 1 6.4827 -3.4578 0.9012 39 1 5.7330 -5.6687 2.1088 40 1 3.1828 -6.6027 -2.7197 41 1 2.8833 -4.8388 -2.8554 42 1 3.5990 -4.7660 -5.0715 43 1 3.2197 -6.5095 -5.0563 44 1 3.4117 -5.6041 -7.9718 45 1 6.8921 -5.7779 -3.4745 46 1 5.8991 -7.2345 -3.1681 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070399290.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:44 Heat of formation + Delta-G solvation = 92.177712 kcal Electronic energy + Delta-G solvation = -29656.945253 eV Core-core repulsion = 25583.585396 eV Total energy + Delta-G solvation = -4073.359857 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.22819 -42.36305 -40.27392 -39.06381 -36.17157 -34.91532 -33.82871 -32.96099 -32.70452 -31.62491 -30.91672 -29.19808 -28.55452 -26.72571 -26.58218 -23.73617 -23.49241 -22.00612 -21.92597 -21.55804 -21.19292 -20.16547 -19.76305 -18.83607 -18.67590 -17.05013 -16.90546 -16.83571 -16.77194 -16.35844 -15.85722 -15.74786 -15.54373 -14.96142 -14.94932 -14.93261 -14.24450 -14.14685 -14.07006 -13.88699 -13.71980 -13.58736 -13.42751 -13.21218 -13.16521 -12.88952 -12.69197 -12.32841 -12.08304 -11.94791 -11.76662 -11.66661 -11.61134 -11.27993 -11.21827 -11.13133 -10.71141 -10.30315 -10.21895 -9.60638 -9.48649 -8.91398 -7.85894 -5.21684 0.24598 0.93658 1.43260 1.45568 1.48518 1.54546 1.77279 1.88049 2.00853 2.28528 2.39936 2.49513 3.31972 3.43140 3.50033 3.69701 3.83845 3.86124 3.99457 4.07700 4.14130 4.16191 4.31053 4.32125 4.52671 4.60820 4.63487 4.69417 4.77200 4.77929 4.84792 4.86869 4.96395 5.02708 5.12283 5.13865 5.30341 5.34488 5.42702 5.50164 5.54301 5.64725 5.74672 6.18398 6.26976 6.43863 6.49162 6.74723 6.89832 7.07778 7.09323 7.75665 8.40473 9.24243 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.008686 B = 0.003127 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3222.681282 B = 8951.537809 C =10735.091768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.246 3.754 3 N -0.531 5.531 4 C 0.053 3.947 5 C -0.098 4.098 6 C 0.596 3.404 7 O -0.566 6.566 8 N -0.707 5.707 9 C 0.207 3.793 10 C -0.274 4.274 11 C 0.112 3.888 12 N -0.463 5.463 13 H 0.455 0.545 14 N -0.321 5.321 15 C 0.106 3.894 16 C -0.012 4.012 17 H 0.089 0.911 18 C -0.111 4.111 19 C 0.186 3.814 20 N -0.626 5.626 21 C -0.247 4.247 22 H 0.080 0.920 23 C -0.064 4.064 24 N -0.950 5.950 25 Si 0.979 3.021 26 H -0.278 1.278 27 H -0.292 1.292 28 H -0.277 1.277 29 C 0.147 3.853 30 N -0.538 5.538 31 H 0.436 0.564 32 H 0.105 0.895 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.181 0.819 36 H 0.406 0.594 37 H 0.056 0.944 38 H 0.092 0.908 39 H 0.226 0.774 40 H 0.065 0.935 41 H 0.085 0.915 42 H 0.014 0.986 43 H 0.005 0.995 44 H 0.247 0.753 45 H 0.037 0.963 46 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.158 4.148 25.083 26.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.018 4.018 3 N -0.251 5.251 4 C -0.101 4.101 5 C -0.215 4.215 6 C 0.383 3.617 7 O -0.446 6.446 8 N -0.358 5.358 9 C 0.084 3.916 10 C -0.286 4.286 11 C -0.039 4.039 12 N -0.171 5.171 13 H 0.303 0.697 14 N -0.144 5.144 15 C -0.061 4.061 16 C -0.033 4.033 17 H 0.108 0.892 18 C -0.150 4.150 19 C 0.061 3.939 20 N -0.352 5.352 21 C -0.376 4.376 22 H 0.098 0.902 23 C -0.257 4.257 24 N -0.598 5.598 25 Si 0.807 3.193 26 H -0.204 1.204 27 H -0.218 1.218 28 H -0.203 1.203 29 C 0.021 3.979 30 N -0.144 5.144 31 H 0.278 0.722 32 H 0.124 0.876 33 H 0.114 0.886 34 H 0.120 0.880 35 H 0.199 0.801 36 H 0.241 0.759 37 H 0.074 0.926 38 H 0.110 0.890 39 H 0.242 0.758 40 H 0.084 0.916 41 H 0.103 0.897 42 H 0.032 0.968 43 H 0.024 0.976 44 H 0.057 0.943 45 H 0.056 0.944 46 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -6.040 4.088 24.522 25.584 hybrid contribution 0.541 -1.193 -0.975 1.633 sum -5.500 2.895 23.547 24.354 Atomic orbital electron populations 1.20541 0.81226 1.05887 1.05579 1.24240 0.97378 0.80978 0.99223 1.70205 1.02324 1.29852 1.22763 1.22808 0.95160 0.91983 1.00141 1.20966 0.84455 0.95660 1.20403 1.16940 0.86692 0.81996 0.76055 1.90839 1.27298 1.74027 1.52387 1.45939 1.10890 1.04641 1.74292 1.19356 0.85926 0.83666 1.02689 1.19865 1.18908 0.97270 0.92592 1.23026 0.95599 0.84450 1.00819 1.46348 1.52395 1.12026 1.06330 0.69747 1.77410 1.25611 1.20045 0.91311 1.21793 0.97769 0.91229 0.95286 1.20587 0.96499 0.99039 0.87184 0.89229 1.22712 0.95668 1.01635 0.94984 1.20906 0.84357 0.97131 0.91476 1.44756 1.06408 1.83134 1.00932 1.19418 0.93610 1.41031 0.83569 0.90240 1.25646 0.96785 1.02120 1.01122 1.70178 1.07880 1.55558 1.26213 0.85149 0.77199 0.78144 0.78822 1.20359 1.21755 1.20275 1.21612 0.95271 0.96390 0.84660 1.43153 1.04912 1.11070 1.55298 0.72175 0.87635 0.88605 0.88024 0.80144 0.75888 0.92553 0.88952 0.75783 0.91611 0.89680 0.96805 0.97648 0.94344 0.94418 0.96425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 10.51 71.24 0.75 0.17 16 2 C 0.25 4.16 8.12 138.20 1.12 5.29 16 3 N -0.53 -12.69 11.20 -187.39 -2.10 -14.79 16 4 C 0.05 1.32 11.66 84.10 0.98 2.30 16 5 C -0.10 -2.18 7.08 40.01 0.28 -1.90 16 6 C 0.60 14.55 7.79 86.47 0.67 15.23 16 7 O -0.57 -18.11 16.90 -4.29 -0.07 -18.19 16 8 N -0.71 -13.24 5.54 -470.74 -2.61 -15.85 16 9 C 0.21 4.09 5.65 85.63 0.48 4.58 16 10 C -0.27 -5.28 5.47 -20.14 -0.11 -5.39 16 11 C 0.11 1.34 11.90 83.54 0.99 2.34 16 12 N -0.46 -7.16 7.36 -57.59 -0.42 -7.59 16 13 H 0.46 3.82 8.96 -213.34 -1.91 1.91 16 14 N -0.32 -8.65 12.38 -47.38 -0.59 -9.23 16 15 C 0.11 2.89 5.89 43.10 0.25 3.14 16 16 C -0.01 -0.41 3.45 -10.15 -0.04 -0.44 16 17 H 0.09 3.10 7.33 -2.39 -0.02 3.08 16 18 C -0.11 -4.10 6.41 31.78 0.20 -3.89 16 19 C 0.19 9.46 5.38 86.73 0.47 9.92 16 20 N -0.63 -33.66 3.39 -692.00 -2.35 -36.01 16 21 C -0.25 -14.45 10.28 84.03 0.86 -13.59 16 22 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 23 C -0.06 -3.73 5.49 84.86 0.47 -3.26 16 24 N -0.95 -58.27 10.31 21.65 0.22 -58.05 16 25 Si 0.98 46.98 29.55 68.60 2.03 49.01 16 26 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 27 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 28 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 29 C 0.15 6.40 6.69 86.85 0.58 6.98 16 30 N -0.54 -8.16 6.07 -176.11 -1.07 -9.23 16 31 H 0.44 3.60 8.32 -92.71 -0.77 2.83 16 32 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.10 0.37 8.14 -2.38 -0.02 0.35 16 35 H 0.18 4.29 8.06 -2.91 -0.02 4.27 16 36 H 0.41 5.76 7.71 -92.71 -0.71 5.04 16 37 H 0.06 1.43 7.77 -2.38 -0.02 1.41 16 38 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.23 0.46 8.06 -2.91 -0.02 0.44 16 40 H 0.07 2.41 7.85 -2.39 -0.02 2.39 16 41 H 0.08 2.62 8.14 -2.38 -0.02 2.60 16 42 H 0.01 0.77 7.38 -2.39 -0.02 0.76 16 43 H 0.01 0.30 7.50 -2.39 -0.02 0.29 16 44 H 0.25 14.74 8.31 -92.70 -0.77 13.97 16 45 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.02 0.81 7.94 -2.38 -0.02 0.79 16 Total: -1.00 -85.74 387.64 -1.33 -87.07 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -2.34 Total: 11.39 kcal Atomic # 6 Polarization: 13.49 SS G_CDS: 7.97 Total: 21.46 kcal Atomic # 7 Polarization: -141.84 SS G_CDS: -8.91 Total: -150.75 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.07 Total: -18.19 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Total: -85.74 -1.33 -87.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070399290.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.249 kcal (2) G-P(sol) polarization free energy of solvation -85.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds