Wall clock time and date at job start Wed Apr 1 2020 03:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30441 * 125.98767 * 2 1 4 4 N 1.39935 * 108.89559 * 180.26305 * 3 2 1 5 5 H 0.97007 * 125.75086 * 179.74002 * 4 3 2 6 6 C 1.34253 * 108.49013 * 359.73502 * 4 3 2 7 7 C 1.38037 * 107.41906 * 359.97438 * 6 4 3 8 8 C 1.47433 * 126.41608 * 179.97438 * 7 6 4 9 9 O 1.21598 * 120.00097 * 180.02562 * 8 7 6 10 10 N 1.34782 * 119.99748 * 0.03026 * 8 7 6 11 11 C 1.46503 * 119.99864 * 179.97438 * 10 8 7 12 12 C 1.50700 * 109.47019 * 180.02562 * 11 10 8 13 13 C 1.35313 * 126.03954 * 259.97524 * 12 11 10 14 14 N 1.34949 * 107.74827 * 180.02562 * 13 12 11 15 15 H 0.96994 * 126.03691 * 180.02562 * 14 13 12 16 16 N 1.40089 * 107.92189 * 359.75072 * 14 13 12 17 17 C 1.30834 * 108.20566 * 0.42011 * 16 14 13 18 18 C 1.50699 * 125.89825 * 179.85428 * 17 16 14 19 19 H 1.08998 * 110.91347 * 177.24512 * 18 17 16 20 20 C 1.55441 * 111.11912 * 53.24070 * 18 17 16 21 21 C 1.54323 * 102.97188 * 206.46635 * 20 18 17 22 22 N 1.47022 * 107.26753 * 22.19263 * 21 20 18 23 23 C 1.36940 * 125.64951 * 181.03524 * 22 21 20 24 24 H 1.07993 * 120.00626 * 173.96059 * 23 22 21 25 25 C 1.38813 * 119.99685 * 353.96137 * 23 22 21 26 26 N 1.31622 * 120.00459 * 6.83562 * 25 23 22 27 27 Si 1.86803 * 120.00134 * 186.84485 * 25 23 22 28 28 H 1.48493 * 109.47511 * 94.97953 * 27 25 23 29 29 H 1.48504 * 109.47010 * 214.98387 * 27 25 23 30 30 H 1.48501 * 109.46706 * 334.97961 * 27 25 23 31 31 C 1.47424 * 108.70453 * 1.06423 * 22 21 20 32 32 H 1.09001 * 109.47238 * 270.16815 * 1 2 3 33 33 H 1.08998 * 109.47266 * 30.16915 * 1 2 3 34 34 H 1.09002 * 109.47347 * 150.17162 * 1 2 3 35 35 H 1.08011 * 126.28775 * 179.97438 * 6 4 3 36 36 H 0.96998 * 120.00378 * 359.97438 * 10 8 7 37 37 H 1.08998 * 109.46878 * 59.99949 * 11 10 8 38 38 H 1.09000 * 109.46565 * 299.99969 * 11 10 8 39 39 H 1.08005 * 126.12807 * 359.97438 * 13 12 11 40 40 H 1.09002 * 110.70736 * 88.09532 * 20 18 17 41 41 H 1.08999 * 110.71181 * 324.84065 * 20 18 17 42 42 H 1.09004 * 109.88274 * 262.77884 * 21 20 18 43 43 H 1.08993 * 110.01225 * 141.68434 * 21 20 18 44 44 H 0.96996 * 120.00616 * 180.02562 * 26 25 23 45 45 H 1.08998 * 110.36838 * 94.71045 * 31 22 21 46 46 H 1.09001 * 110.36387 * 216.92232 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6110 0.6442 -0.0061 5 1 4.3841 1.2301 -0.0109 6 6 3.6438 -0.6979 -0.0039 7 6 2.3372 -1.1432 0.0041 8 6 1.8915 -2.5485 0.0084 9 8 0.7039 -2.8097 0.0150 10 7 2.8004 -3.5438 0.0052 11 6 2.3575 -4.9402 0.0101 12 6 3.5600 -5.8486 0.0057 13 6 4.0749 -6.4825 -1.0731 14 7 5.1435 -7.1956 -0.6600 15 1 5.7102 -7.7500 -1.2188 16 7 5.2935 -6.9887 0.7174 17 6 4.3406 -6.1858 1.1163 18 6 4.1252 -5.7026 2.5273 19 1 3.2892 -5.0049 2.5763 20 6 5.4194 -5.0635 3.1042 21 6 5.2598 -5.2703 4.6251 22 7 4.3205 -6.3849 4.8177 23 6 3.8957 -6.8710 6.0254 24 1 3.1287 -7.6303 6.0624 25 6 4.4511 -6.3877 7.2022 26 7 5.2860 -5.3708 7.1670 27 14 4.0138 -7.1808 8.8361 28 1 5.0405 -8.1954 9.1844 29 1 3.9671 -6.1402 9.8945 30 1 2.6860 -7.8370 8.7280 31 6 3.9124 -6.8931 3.4954 32 1 -0.3634 0.0030 1.0277 33 1 -0.3634 0.8884 -0.5164 34 1 -0.3634 -0.8915 -0.5112 35 1 4.5298 -1.3158 -0.0078 36 1 3.7477 -3.3355 -0.0004 37 1 1.7530 -5.1327 -0.8762 38 1 1.7628 -5.1295 0.9037 39 1 3.6978 -6.4282 -2.0837 40 1 5.4658 -4.0017 2.8622 41 1 6.3036 -5.5832 2.7350 42 1 4.8598 -4.3653 5.0824 43 1 6.2233 -5.5162 5.0713 44 1 5.6743 -5.0333 7.9892 45 1 4.5382 -7.7363 3.2033 46 1 2.8630 -7.1875 3.5096 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070418313.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:46 Heat of formation + Delta-G solvation = 135.050531 kcal Electronic energy + Delta-G solvation = -29715.495618 eV Core-core repulsion = 25643.994866 eV Total energy + Delta-G solvation = -4071.500752 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.61035 -41.32278 -39.00660 -37.27148 -35.00962 -33.14629 -33.03990 -31.61314 -31.06002 -29.94639 -29.08926 -28.11697 -27.49200 -25.81139 -24.60647 -23.08037 -22.09524 -20.64302 -20.36408 -20.00047 -19.79866 -18.87364 -18.67475 -17.77769 -16.76906 -16.48316 -15.65316 -15.57302 -14.97883 -14.71903 -14.61632 -14.39778 -14.31792 -14.09875 -13.75442 -13.52543 -13.08265 -12.91305 -12.80399 -12.50200 -12.30452 -12.16757 -12.15339 -11.79493 -11.71007 -11.13709 -10.94922 -10.79886 -10.77466 -10.57217 -10.08024 -9.94939 -9.93947 -9.75599 -9.72282 -9.59187 -9.16965 -9.13186 -8.86876 -8.63228 -8.51161 -6.75376 -5.66521 -2.98165 1.29617 1.81460 2.00664 2.44898 2.61179 2.85427 3.42312 3.44974 3.50051 3.51956 3.52825 4.31235 4.40494 4.53976 4.66618 4.70553 4.95306 5.07161 5.20159 5.23768 5.28129 5.45335 5.51105 5.56771 5.61393 5.70881 5.79167 5.84557 5.86517 5.93257 5.97072 6.08997 6.32657 6.40490 6.45969 6.49653 6.56646 6.70895 6.75329 6.83607 6.99852 7.24524 7.29360 7.59139 7.61512 7.69988 7.76224 7.88406 8.31132 8.32029 9.28152 9.88654 10.55412 11.45779 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.009139 B = 0.003097 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3063.194998 B = 9038.629582 C =10841.430082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.135 3.865 3 N -0.303 5.303 4 N -0.461 5.461 5 H 0.444 0.556 6 C 0.107 3.893 7 C -0.286 4.286 8 C 0.594 3.406 9 O -0.543 6.543 10 N -0.722 5.722 11 C 0.204 3.796 12 C -0.261 4.261 13 C 0.075 3.925 14 N -0.482 5.482 15 H 0.438 0.562 16 N -0.282 5.282 17 C 0.122 3.878 18 C -0.032 4.032 19 H 0.092 0.908 20 C -0.129 4.129 21 C 0.178 3.822 22 N -0.604 5.604 23 C -0.226 4.226 24 H 0.078 0.922 25 C -0.008 4.008 26 N -0.921 5.921 27 Si 0.909 3.091 28 H -0.290 1.290 29 H -0.292 1.292 30 H -0.281 1.281 31 C 0.149 3.851 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.186 0.814 36 H 0.397 0.603 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.175 0.825 40 H 0.057 0.943 41 H 0.062 0.938 42 H 0.042 0.958 43 H 0.046 0.954 44 H 0.251 0.749 45 H 0.025 0.975 46 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.027 7.339 -22.625 23.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.033 4.033 3 N -0.126 5.126 4 N -0.166 5.166 5 H 0.288 0.712 6 C -0.046 4.046 7 C -0.301 4.301 8 C 0.381 3.619 9 O -0.421 6.421 10 N -0.373 5.373 11 C 0.080 3.920 12 C -0.273 4.273 13 C -0.074 4.074 14 N -0.187 5.187 15 H 0.282 0.718 16 N -0.104 5.104 17 C -0.046 4.046 18 C -0.054 4.054 19 H 0.110 0.890 20 C -0.169 4.169 21 C 0.053 3.947 22 N -0.331 5.331 23 C -0.354 4.354 24 H 0.096 0.904 25 C -0.204 4.204 26 N -0.568 5.568 27 Si 0.740 3.260 28 H -0.217 1.217 29 H -0.218 1.218 30 H -0.206 1.206 31 C 0.022 3.978 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.115 0.885 35 H 0.202 0.798 36 H 0.230 0.770 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.192 0.808 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.043 0.957 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -0.819 7.749 -22.038 23.375 hybrid contribution 0.630 -0.772 0.280 1.035 sum -0.190 6.976 -21.758 22.850 Atomic orbital electron populations 1.20366 0.85599 1.03973 1.03831 1.22504 0.97434 0.88668 0.94646 1.77175 0.86232 1.22491 1.26689 1.46095 1.07881 1.05484 1.57091 0.71162 1.23180 0.99087 0.85715 0.96612 1.20322 0.92072 0.94716 1.22987 1.17199 0.85588 0.83404 0.75709 1.90744 1.16275 1.84246 1.50806 1.45978 1.09492 1.05939 1.75904 1.19370 0.92296 0.77619 1.02708 1.19969 1.04467 1.10163 0.92718 1.22370 0.90375 0.95073 0.99614 1.46358 1.24737 1.39635 1.08010 0.71850 1.77493 1.23124 1.21023 0.88750 1.22268 0.91858 0.94224 0.96288 1.20991 0.99583 0.98981 0.85808 0.88982 1.22962 0.95669 0.98823 0.99397 1.21152 0.94432 0.91306 0.87819 1.44453 1.51875 1.36796 0.99931 1.19072 1.16648 1.17558 0.82170 0.90422 1.24800 0.99394 0.98477 0.97702 1.69975 1.34756 1.25990 1.26114 0.86129 0.77774 0.78415 0.83678 1.21708 1.21816 1.20608 1.21514 0.97582 0.93101 0.85560 0.89973 0.91148 0.88503 0.79757 0.76961 0.91033 0.90331 0.80838 0.92470 0.91893 0.93978 0.93592 0.93854 0.95707 0.94385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 9.92 36.01 0.36 -0.47 16 2 C 0.14 1.62 7.26 -82.02 -0.60 1.02 16 3 N -0.30 -3.48 12.63 33.89 0.43 -3.06 16 4 N -0.46 -3.72 7.29 30.85 0.22 -3.50 16 5 H 0.44 1.99 8.96 -182.72 -1.64 0.36 16 6 C 0.11 0.85 11.52 -16.57 -0.19 0.66 16 7 C -0.29 -3.21 6.13 -105.07 -0.64 -3.86 16 8 C 0.59 7.47 7.81 -12.51 -0.10 7.37 16 9 O -0.54 -8.46 14.92 5.28 0.08 -8.38 16 10 N -0.72 -7.54 5.54 -62.56 -0.35 -7.88 16 11 C 0.20 2.27 5.65 -5.19 -0.03 2.24 16 12 C -0.26 -2.97 5.47 -105.05 -0.57 -3.54 16 13 C 0.08 0.65 11.90 -17.22 -0.20 0.45 16 14 N -0.48 -4.80 7.36 30.45 0.22 -4.57 16 15 H 0.44 2.87 8.96 -182.61 -1.64 1.23 16 16 N -0.28 -4.18 12.39 33.67 0.42 -3.77 16 17 C 0.12 1.79 5.90 -82.41 -0.49 1.31 16 18 C -0.03 -0.56 3.46 -89.47 -0.31 -0.87 16 19 H 0.09 1.61 7.33 -51.93 -0.38 1.23 16 20 C -0.13 -2.42 6.42 -24.74 -0.16 -2.58 16 21 C 0.18 4.35 5.38 -3.06 -0.02 4.33 16 22 N -0.60 -15.77 3.40 -170.08 -0.58 -16.35 16 23 C -0.23 -6.44 10.26 -15.06 -0.15 -6.60 16 24 H 0.08 2.14 7.84 -52.49 -0.41 1.73 16 25 C -0.01 -0.22 5.48 -17.43 -0.10 -0.31 16 26 N -0.92 -27.36 10.36 55.49 0.57 -26.78 16 27 Si 0.91 22.48 29.56 -169.99 -5.02 17.46 16 28 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 29 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 30 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 31 C 0.15 3.22 6.68 -2.53 -0.02 3.20 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.10 1.08 6.56 -51.93 -0.34 0.74 16 35 H 0.19 0.76 7.46 -52.48 -0.39 0.36 16 36 H 0.40 3.38 7.39 -40.82 -0.30 3.08 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 1.04 7.78 -51.93 -0.40 0.64 16 39 H 0.17 0.83 8.06 -52.48 -0.42 0.41 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.06 1.18 7.85 -51.93 -0.41 0.77 16 42 H 0.04 1.13 7.55 -51.93 -0.39 0.74 16 43 H 0.05 1.25 7.36 -51.93 -0.38 0.87 16 44 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 45 H 0.03 0.56 7.95 -51.93 -0.41 0.15 16 46 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 384.06 15.07 5.79 5.79 Total: -1.00 -37.45 384.06 -10.20 -47.65 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -8.77 Total: 1.04 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: -3.22 Total: 2.35 kcal Atomic # 7 Polarization: -66.85 SS G_CDS: 0.94 Total: -65.91 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.08 Total: -8.38 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.45 -10.20 -47.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070418313.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.700 kcal (2) G-P(sol) polarization free energy of solvation -37.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds