Wall clock time and date at job start Wed Apr 1 2020 03:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30441 * 125.98767 * 2 1 4 4 N 1.39935 * 108.89559 * 180.26305 * 3 2 1 5 5 H 0.97007 * 125.75086 * 179.74002 * 4 3 2 6 6 C 1.34253 * 108.49013 * 359.73502 * 4 3 2 7 7 C 1.38037 * 107.41906 * 359.97438 * 6 4 3 8 8 C 1.47433 * 126.41608 * 179.97438 * 7 6 4 9 9 O 1.21598 * 120.00097 * 180.02562 * 8 7 6 10 10 N 1.34782 * 119.99748 * 0.03026 * 8 7 6 11 11 C 1.46503 * 119.99864 * 179.97438 * 10 8 7 12 12 C 1.50700 * 109.47019 * 180.02562 * 11 10 8 13 13 C 1.35313 * 126.03954 * 259.97524 * 12 11 10 14 14 N 1.34949 * 107.74827 * 180.02562 * 13 12 11 15 15 H 0.96994 * 126.03691 * 180.02562 * 14 13 12 16 16 N 1.40089 * 107.92189 * 359.75072 * 14 13 12 17 17 C 1.30834 * 108.20566 * 0.42011 * 16 14 13 18 18 C 1.50699 * 125.89825 * 179.85428 * 17 16 14 19 19 H 1.08998 * 110.91347 * 177.24512 * 18 17 16 20 20 C 1.55441 * 111.11912 * 53.24070 * 18 17 16 21 21 C 1.54323 * 102.97188 * 206.46635 * 20 18 17 22 22 N 1.47022 * 107.26753 * 22.19263 * 21 20 18 23 23 C 1.36940 * 125.64951 * 181.03524 * 22 21 20 24 24 H 1.07993 * 120.00626 * 173.96059 * 23 22 21 25 25 C 1.38813 * 119.99685 * 353.96137 * 23 22 21 26 26 N 1.31622 * 120.00459 * 6.83562 * 25 23 22 27 27 Si 1.86803 * 120.00134 * 186.84485 * 25 23 22 28 28 H 1.48493 * 109.47511 * 94.97953 * 27 25 23 29 29 H 1.48504 * 109.47010 * 214.98387 * 27 25 23 30 30 H 1.48501 * 109.46706 * 334.97961 * 27 25 23 31 31 C 1.47424 * 108.70453 * 1.06423 * 22 21 20 32 32 H 1.09001 * 109.47238 * 270.16815 * 1 2 3 33 33 H 1.08998 * 109.47266 * 30.16915 * 1 2 3 34 34 H 1.09002 * 109.47347 * 150.17162 * 1 2 3 35 35 H 1.08011 * 126.28775 * 179.97438 * 6 4 3 36 36 H 0.96998 * 120.00378 * 359.97438 * 10 8 7 37 37 H 1.08998 * 109.46878 * 59.99949 * 11 10 8 38 38 H 1.09000 * 109.46565 * 299.99969 * 11 10 8 39 39 H 1.08005 * 126.12807 * 359.97438 * 13 12 11 40 40 H 1.09002 * 110.70736 * 88.09532 * 20 18 17 41 41 H 1.08999 * 110.71181 * 324.84065 * 20 18 17 42 42 H 1.09004 * 109.88274 * 262.77884 * 21 20 18 43 43 H 1.08993 * 110.01225 * 141.68434 * 21 20 18 44 44 H 0.96996 * 120.00616 * 180.02562 * 26 25 23 45 45 H 1.08998 * 110.36838 * 94.71045 * 31 22 21 46 46 H 1.09001 * 110.36387 * 216.92232 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6110 0.6442 -0.0061 5 1 4.3841 1.2301 -0.0109 6 6 3.6438 -0.6979 -0.0039 7 6 2.3372 -1.1432 0.0041 8 6 1.8915 -2.5485 0.0084 9 8 0.7039 -2.8097 0.0150 10 7 2.8004 -3.5438 0.0052 11 6 2.3575 -4.9402 0.0101 12 6 3.5600 -5.8486 0.0057 13 6 4.0749 -6.4825 -1.0731 14 7 5.1435 -7.1956 -0.6600 15 1 5.7102 -7.7500 -1.2188 16 7 5.2935 -6.9887 0.7174 17 6 4.3406 -6.1858 1.1163 18 6 4.1252 -5.7026 2.5273 19 1 3.2892 -5.0049 2.5763 20 6 5.4194 -5.0635 3.1042 21 6 5.2598 -5.2703 4.6251 22 7 4.3205 -6.3849 4.8177 23 6 3.8957 -6.8710 6.0254 24 1 3.1287 -7.6303 6.0624 25 6 4.4511 -6.3877 7.2022 26 7 5.2860 -5.3708 7.1670 27 14 4.0138 -7.1808 8.8361 28 1 5.0405 -8.1954 9.1844 29 1 3.9671 -6.1402 9.8945 30 1 2.6860 -7.8370 8.7280 31 6 3.9124 -6.8931 3.4954 32 1 -0.3634 0.0030 1.0277 33 1 -0.3634 0.8884 -0.5164 34 1 -0.3634 -0.8915 -0.5112 35 1 4.5298 -1.3158 -0.0078 36 1 3.7477 -3.3355 -0.0004 37 1 1.7530 -5.1327 -0.8762 38 1 1.7628 -5.1295 0.9037 39 1 3.6978 -6.4282 -2.0837 40 1 5.4658 -4.0017 2.8622 41 1 6.3036 -5.5832 2.7350 42 1 4.8598 -4.3653 5.0824 43 1 6.2233 -5.5162 5.0713 44 1 5.6743 -5.0333 7.9892 45 1 4.5382 -7.7363 3.2033 46 1 2.8630 -7.1875 3.5096 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070418313.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:45 Heat of formation + Delta-G solvation = 106.219743 kcal Electronic energy + Delta-G solvation = -29716.745815 eV Core-core repulsion = 25643.994866 eV Total energy + Delta-G solvation = -4072.750949 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.39543 -42.21888 -39.92612 -38.99988 -35.93738 -34.86123 -33.87967 -32.83784 -32.19354 -30.86802 -30.74782 -29.14278 -28.89989 -26.69858 -26.54320 -23.85590 -23.44065 -21.94816 -21.44605 -21.31810 -20.63831 -20.07577 -19.50855 -18.80507 -18.55826 -17.33329 -16.81069 -16.51099 -16.42038 -16.24550 -15.76181 -15.50718 -15.44028 -15.12374 -14.81479 -14.63786 -14.07802 -13.95953 -13.87835 -13.76926 -13.69104 -13.62770 -13.54094 -13.08333 -12.91418 -12.85546 -12.71019 -12.25627 -12.00393 -11.93792 -11.90608 -11.70921 -11.62471 -11.20927 -10.89519 -10.68119 -10.48734 -10.22688 -10.05077 -9.64859 -9.49371 -8.87497 -7.85117 -5.19392 0.60970 1.01605 1.14905 1.45829 1.47897 1.56369 1.57395 1.87798 2.07960 2.50404 2.54469 2.67887 3.33105 3.56334 3.57207 3.77617 3.82356 3.92625 4.06710 4.18871 4.22333 4.27894 4.35898 4.43172 4.53248 4.62308 4.69694 4.76009 4.80845 4.85046 4.91391 4.98862 5.03663 5.04873 5.10100 5.22329 5.39433 5.46573 5.51654 5.60664 5.64034 5.70083 5.77581 6.21121 6.30342 6.53738 6.56139 6.79347 6.82651 7.11643 7.44465 7.78276 8.43721 9.25778 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.009139 B = 0.003097 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3063.194998 B = 9038.629582 C =10841.430082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.116 3.884 3 N -0.330 5.330 4 N -0.449 5.449 5 H 0.460 0.540 6 C 0.135 3.865 7 C -0.319 4.319 8 C 0.592 3.408 9 O -0.583 6.583 10 N -0.709 5.709 11 C 0.209 3.791 12 C -0.270 4.270 13 C 0.109 3.891 14 N -0.465 5.465 15 H 0.454 0.546 16 N -0.323 5.323 17 C 0.107 3.893 18 C -0.011 4.011 19 H 0.091 0.909 20 C -0.111 4.111 21 C 0.185 3.815 22 N -0.626 5.626 23 C -0.245 4.245 24 H 0.080 0.920 25 C -0.063 4.063 26 N -0.948 5.948 27 Si 0.977 3.023 28 H -0.287 1.287 29 H -0.293 1.293 30 H -0.268 1.268 31 C 0.146 3.854 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.229 0.771 36 H 0.408 0.592 37 H 0.086 0.914 38 H 0.051 0.949 39 H 0.225 0.775 40 H 0.088 0.912 41 H 0.064 0.936 42 H 0.010 0.990 43 H 0.008 0.992 44 H 0.247 0.753 45 H 0.017 0.983 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.226 7.053 -25.242 26.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.051 4.051 3 N -0.153 5.153 4 N -0.155 5.155 5 H 0.308 0.692 6 C -0.020 4.020 7 C -0.334 4.334 8 C 0.381 3.619 9 O -0.464 6.464 10 N -0.360 5.360 11 C 0.085 3.915 12 C -0.282 4.282 13 C -0.041 4.041 14 N -0.173 5.173 15 H 0.301 0.699 16 N -0.146 5.146 17 C -0.060 4.060 18 C -0.032 4.032 19 H 0.110 0.890 20 C -0.150 4.150 21 C 0.060 3.940 22 N -0.353 5.353 23 C -0.374 4.374 24 H 0.097 0.903 25 C -0.256 4.256 26 N -0.597 5.597 27 Si 0.805 3.195 28 H -0.214 1.214 29 H -0.219 1.219 30 H -0.193 1.193 31 C 0.020 3.980 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.245 0.755 36 H 0.244 0.756 37 H 0.104 0.896 38 H 0.069 0.931 39 H 0.241 0.759 40 H 0.106 0.894 41 H 0.083 0.917 42 H 0.029 0.971 43 H 0.026 0.974 44 H 0.056 0.944 45 H 0.035 0.965 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 0.024 7.458 -24.687 25.789 hybrid contribution 0.442 -0.731 1.009 1.322 sum 0.466 6.727 -23.678 24.620 Atomic orbital electron populations 1.20318 0.85589 1.04025 1.03573 1.22728 0.98014 0.89304 0.95055 1.77105 0.87696 1.22864 1.27663 1.46145 1.07455 1.06066 1.55803 0.69209 1.23737 0.99204 0.85693 0.93361 1.20358 0.93511 0.93910 1.25629 1.17417 0.85248 0.84204 0.75076 1.90719 1.17948 1.84870 1.52851 1.45844 1.09827 1.05372 1.74987 1.19251 0.92204 0.77872 1.02124 1.19894 1.04582 1.11252 0.92468 1.23006 0.88343 0.91997 1.00795 1.46336 1.25123 1.39295 1.06525 0.69860 1.77397 1.23906 1.21753 0.91527 1.21778 0.93402 0.95570 0.95296 1.20625 0.98643 0.96807 0.87135 0.89047 1.22759 0.96459 1.00976 0.94784 1.20922 0.91937 0.89497 0.91614 1.44770 1.52216 1.37305 1.00964 1.19454 1.16757 1.17603 0.83621 0.90261 1.25646 0.99735 0.99118 1.01129 1.70190 1.35811 1.27123 1.26537 0.85087 0.77958 0.77317 0.79168 1.21449 1.21911 1.19270 1.21614 0.97023 0.94594 0.84734 0.90389 0.89839 0.89613 0.75493 0.75580 0.89551 0.93083 0.75912 0.89369 0.91717 0.97140 0.97421 0.94370 0.96500 0.94515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.65 9.92 71.24 0.71 -0.94 16 2 C 0.12 2.75 7.26 43.52 0.32 3.06 16 3 N -0.33 -7.27 12.63 -46.68 -0.59 -7.85 16 4 N -0.45 -6.18 7.29 -56.32 -0.41 -6.59 16 5 H 0.46 2.86 8.96 -213.42 -1.91 0.95 16 6 C 0.13 1.73 11.52 84.28 0.97 2.71 16 7 C -0.32 -6.77 6.13 -20.15 -0.12 -6.89 16 8 C 0.59 14.33 7.81 86.66 0.68 15.01 16 9 O -0.58 -18.35 14.92 -4.03 -0.06 -18.41 16 10 N -0.71 -13.22 5.54 -470.10 -2.60 -15.82 16 11 C 0.21 4.23 5.65 85.63 0.48 4.71 16 12 C -0.27 -5.28 5.47 -20.14 -0.11 -5.39 16 13 C 0.11 1.36 11.90 83.54 0.99 2.35 16 14 N -0.46 -7.40 7.36 -57.59 -0.42 -7.82 16 15 H 0.45 4.03 8.96 -213.34 -1.91 2.12 16 16 N -0.32 -8.82 12.39 -47.39 -0.59 -9.41 16 17 C 0.11 2.92 5.90 43.10 0.25 3.18 16 18 C -0.01 -0.38 3.46 -10.05 -0.03 -0.41 16 19 H 0.09 3.16 7.33 -2.39 -0.02 3.14 16 20 C -0.11 -4.09 6.42 31.88 0.20 -3.89 16 21 C 0.19 9.41 5.38 86.73 0.47 9.88 16 22 N -0.63 -33.75 3.40 -692.00 -2.35 -36.10 16 23 C -0.25 -14.37 10.26 84.03 0.86 -13.50 16 24 H 0.08 4.47 7.84 -2.91 -0.02 4.45 16 25 C -0.06 -3.71 5.48 84.86 0.47 -3.24 16 26 N -0.95 -58.30 10.36 21.65 0.22 -58.07 16 27 Si 0.98 47.09 29.56 68.60 2.03 49.12 16 28 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 29 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 30 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 31 C 0.15 6.41 6.68 86.86 0.58 6.99 16 32 H 0.08 1.68 8.14 -2.39 -0.02 1.67 16 33 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.09 2.02 6.56 -2.39 -0.02 2.01 16 35 H 0.23 0.75 7.46 -2.91 -0.02 0.73 16 36 H 0.41 5.54 7.39 -92.71 -0.68 4.86 16 37 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.05 1.33 7.78 -2.39 -0.02 1.31 16 39 H 0.22 0.58 8.06 -2.91 -0.02 0.56 16 40 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 41 H 0.06 2.38 7.85 -2.39 -0.02 2.36 16 42 H 0.01 0.58 7.55 -2.38 -0.02 0.56 16 43 H 0.01 0.43 7.36 -2.39 -0.02 0.42 16 44 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 45 H 0.02 0.78 7.95 -2.39 -0.02 0.76 16 46 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -86.66 384.06 -1.51 -88.17 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -3.45 Total: 9.17 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: 6.71 Total: 13.62 kcal Atomic # 7 Polarization: -134.93 SS G_CDS: -6.74 Total: -141.67 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.06 Total: -18.41 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -86.66 -1.51 -88.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070418313.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.390 kcal (2) G-P(sol) polarization free energy of solvation -86.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds