Wall clock time and date at job start Wed Apr 1 2020 03:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35367 * 126.38098 * 2 1 4 4 C 1.41502 * 105.50225 * 180.13855 * 3 2 1 5 5 C 1.47705 * 126.52116 * 179.83636 * 4 3 2 6 6 O 1.21575 * 119.99896 * 359.71975 * 5 4 3 7 7 N 1.34779 * 120.00101 * 179.71495 * 5 4 3 8 8 C 1.47024 * 125.64931 * 180.02562 * 7 5 4 9 9 C 1.54320 * 107.27409 * 178.91721 * 8 7 5 10 10 H 1.09001 * 110.87013 * 96.23747 * 9 8 7 11 11 C 1.50695 * 110.72279 * 219.44451 * 9 8 7 12 12 C 1.34671 * 125.98910 * 28.52074 * 11 9 8 13 13 N 1.36882 * 106.81775 * 179.97438 * 12 11 9 14 14 C 1.46497 * 126.40024 * 180.02562 * 13 12 11 15 15 C 1.35048 * 107.20585 * 359.97438 * 13 12 11 16 16 N 1.30506 * 108.69868 * 359.77189 * 15 13 12 17 17 C 1.55159 * 102.94309 * 337.80737 * 9 8 7 18 18 H 1.09003 * 111.00569 * 277.39164 * 17 9 8 19 19 N 1.46499 * 111.00537 * 153.57398 * 17 9 8 20 20 C 1.36939 * 119.99933 * 155.27613 * 19 17 9 21 21 H 1.08001 * 119.99700 * 359.72658 * 20 19 17 22 22 C 1.38810 * 120.00095 * 179.71972 * 20 19 17 23 23 N 1.31624 * 119.99740 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00044 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47173 * 60.00435 * 24 22 20 26 26 H 1.48497 * 109.47172 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47132 * 300.00314 * 24 22 20 28 28 C 1.47421 * 125.64950 * 359.97438 * 7 5 4 29 29 N 1.31816 * 106.96323 * 359.58147 * 4 3 2 30 30 N 1.28468 * 110.06973 * 0.25832 * 29 4 3 31 31 H 0.97000 * 124.88301 * 179.97438 * 30 29 4 32 32 H 1.09007 * 109.47110 * 270.35284 * 1 2 3 33 33 H 1.08998 * 109.47481 * 30.35159 * 1 2 3 34 34 H 1.09003 * 109.47058 * 150.35734 * 1 2 3 35 35 H 1.07999 * 127.25359 * 359.97438 * 3 2 1 36 36 H 1.09006 * 109.88273 * 59.49887 * 8 7 5 37 37 H 1.09002 * 109.88091 * 298.33589 * 8 7 5 38 38 H 1.07996 * 126.59124 * 359.94102 * 12 11 9 39 39 H 1.09000 * 109.47297 * 89.99572 * 14 13 12 40 40 H 1.09001 * 109.47233 * 209.99868 * 14 13 12 41 41 H 1.09003 * 109.46896 * 329.99303 * 14 13 12 42 42 H 1.07997 * 125.65089 * 179.97438 * 15 13 12 43 43 H 0.97001 * 119.99790 * 334.99586 * 19 17 9 44 44 H 0.96998 * 119.99409 * 179.97438 * 23 22 20 45 45 H 1.08996 * 110.37002 * 85.31268 * 28 7 5 46 46 H 1.09007 * 110.36737 * 322.98876 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3099 1.0898 0.0000 4 6 3.6320 0.5855 -0.0033 5 6 4.8764 1.3813 -0.0080 6 8 4.8212 2.5958 -0.0145 7 7 6.0730 0.7611 -0.0049 8 6 7.3835 1.4275 -0.0084 9 6 8.4598 0.3220 0.0249 10 1 8.8185 0.0989 -0.9799 11 6 9.6041 0.7187 0.9217 12 6 9.5258 1.5340 1.9908 13 7 10.7876 1.6235 2.5137 14 6 11.1888 2.4023 3.6879 15 6 11.5935 0.8589 1.7458 16 7 10.8778 0.3167 0.7987 17 6 7.6940 -0.8909 0.6163 18 1 7.6578 -0.8374 1.7044 19 7 8.2901 -2.1542 0.1750 20 6 8.1307 -3.2866 0.9283 21 1 7.5691 -3.2473 1.8500 22 6 8.6906 -4.4849 0.5073 23 7 9.3753 -4.5326 -0.6159 24 14 8.4737 -6.0294 1.5352 25 1 7.0268 -6.3366 1.6678 26 1 9.1627 -7.1658 0.8727 27 1 9.0594 -5.8136 2.8827 28 6 6.2846 -0.6978 0.0034 29 7 3.5421 -0.7295 0.0042 30 7 2.3081 -1.0870 0.0063 31 1 1.9967 -2.0056 0.0112 32 1 -0.3634 0.0063 1.0277 33 1 -0.3634 0.8868 -0.5193 34 1 -0.3633 -0.8932 -0.5083 35 1 2.0056 2.1261 -0.0004 36 1 7.4782 2.0637 0.8716 37 1 7.4934 2.0246 -0.9137 38 1 8.6382 2.0235 2.3635 39 1 11.0958 1.7858 4.5819 40 1 12.2241 2.7238 3.5743 41 1 10.5449 3.2769 3.7810 42 1 12.6539 0.7168 1.8932 43 1 8.7944 -2.1895 -0.6529 44 1 9.7669 -5.3699 -0.9099 45 1 6.2559 -1.0912 -1.0126 46 1 5.5317 -1.1868 0.6218 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070472749.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:59 Heat of formation + Delta-G solvation = 134.290645 kcal Electronic energy + Delta-G solvation = -30042.493415 eV Core-core repulsion = 25970.959711 eV Total energy + Delta-G solvation = -4071.533703 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.64308 -41.78066 -39.40969 -37.25000 -34.02707 -33.83974 -32.91966 -32.02447 -31.39022 -30.52004 -28.27912 -27.35466 -27.15904 -26.58178 -24.64428 -23.45215 -22.17640 -21.24420 -20.93257 -20.57591 -19.23028 -18.71864 -17.73244 -17.28681 -16.77750 -16.33259 -15.93274 -15.44699 -15.38703 -15.11782 -14.37459 -14.10878 -13.98886 -13.91993 -13.51538 -13.34974 -13.31355 -13.15294 -13.02351 -12.85355 -12.69317 -12.65308 -12.39482 -12.29529 -12.05469 -11.31217 -11.24169 -10.81960 -10.72805 -10.54443 -10.27174 -10.05843 -9.91449 -9.63079 -9.47559 -9.36166 -9.20508 -8.97593 -8.88858 -8.23763 -7.97814 -6.89289 -5.69379 -2.98288 1.70847 2.08333 2.32476 2.81501 3.00137 3.31740 3.46306 3.51003 3.52069 3.53957 3.63759 4.45505 4.58099 4.60998 4.67180 4.77610 4.82566 5.03640 5.05695 5.19736 5.20824 5.27008 5.29799 5.44256 5.47542 5.52987 5.59900 5.70348 5.73409 5.84333 5.90420 5.93676 6.05269 6.14860 6.33280 6.39171 6.51595 6.54917 6.63502 6.70210 7.00145 7.01149 7.10164 7.46298 7.74829 7.81060 7.93264 8.44221 8.47799 8.50700 9.59487 10.15290 10.51159 11.52547 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.007147 B = 0.004199 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3916.747321 B = 6666.364959 C = 9866.279601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.006 3.994 3 C -0.181 4.181 4 C -0.006 4.006 5 C 0.613 3.387 6 O -0.549 6.549 7 N -0.599 5.599 8 C 0.122 3.878 9 C -0.031 4.031 10 H 0.097 0.903 11 C 0.041 3.959 12 C -0.067 4.067 13 N -0.468 5.468 14 C 0.076 3.924 15 C 0.176 3.824 16 N -0.467 5.467 17 C 0.187 3.813 18 H 0.064 0.936 19 N -0.701 5.701 20 C -0.240 4.240 21 H 0.068 0.932 22 C -0.007 4.007 23 N -0.926 5.926 24 Si 0.904 3.096 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.288 1.288 28 C 0.075 3.925 29 N -0.239 5.239 30 N -0.382 5.382 31 H 0.444 0.556 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.160 0.840 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.170 0.830 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.200 0.800 43 H 0.389 0.611 44 H 0.255 0.745 45 H 0.070 0.930 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.705 13.796 5.457 17.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.120 4.120 3 C -0.209 4.209 4 C -0.167 4.167 5 C 0.399 3.601 6 O -0.426 6.426 7 N -0.331 5.331 8 C -0.001 4.001 9 C -0.052 4.052 10 H 0.115 0.885 11 C -0.089 4.089 12 C -0.198 4.198 13 N -0.153 5.153 14 C -0.067 4.067 15 C -0.106 4.106 16 N -0.184 5.184 17 C 0.073 3.927 18 H 0.082 0.918 19 N -0.340 5.340 20 C -0.371 4.371 21 H 0.086 0.914 22 C -0.204 4.204 23 N -0.574 5.574 24 Si 0.735 3.265 25 H -0.214 1.214 26 H -0.217 1.217 27 H -0.214 1.214 28 C -0.050 4.050 29 N -0.075 5.075 30 N -0.097 5.097 31 H 0.289 0.711 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.178 0.822 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.187 0.813 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.217 0.783 43 H 0.224 0.776 44 H 0.065 0.935 45 H 0.088 0.912 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.765 12.939 5.094 16.437 hybrid contribution -0.784 -0.321 1.032 1.335 sum -9.549 12.618 6.126 16.968 Atomic orbital electron populations 1.20328 0.86753 1.03828 1.03232 1.21443 0.95301 0.87341 1.07874 1.21461 0.90458 0.99545 1.09434 1.21869 0.94909 0.89791 1.10095 1.16530 0.80815 0.85814 0.76904 1.90751 1.86595 1.12811 1.52479 1.48318 1.04514 1.09582 1.70680 1.21922 0.81299 0.94899 1.01997 1.20779 0.90043 0.95303 0.99058 0.88457 1.20139 0.92651 0.98969 0.97148 1.22351 0.88269 1.08830 1.00379 1.45340 1.08489 1.37509 1.23923 1.21953 1.02014 0.95974 0.86729 1.24969 0.98416 0.95928 0.91333 1.70215 1.03216 1.22316 1.22657 1.21304 0.88765 0.85820 0.96791 0.91791 1.42190 1.61574 1.03141 1.27139 1.19142 1.28059 0.86911 1.02964 0.91410 1.24699 1.00483 0.97678 0.97527 1.69664 1.39384 1.25945 1.22404 0.86326 0.77370 0.83303 0.79473 1.21394 1.21732 1.21436 1.23715 1.01386 0.77414 1.02517 1.73908 1.00735 1.14920 1.17922 1.43485 1.03187 1.09572 1.53471 0.71138 0.90421 0.89653 0.91158 0.82239 0.91315 0.91289 0.81302 0.90860 0.89764 0.90000 0.78294 0.77603 0.93500 0.91177 0.89307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.44 36.01 0.38 -0.11 16 2 C 0.01 0.06 7.23 -82.21 -0.59 -0.53 16 3 C -0.18 -2.37 10.73 -39.36 -0.42 -2.79 16 4 C -0.01 -0.09 6.97 -82.76 -0.58 -0.67 16 5 C 0.61 11.00 7.86 -12.39 -0.10 10.90 16 6 O -0.55 -10.74 17.25 5.30 0.09 -10.65 16 7 N -0.60 -10.50 3.33 -171.69 -0.57 -11.07 16 8 C 0.12 1.99 6.40 -3.07 -0.02 1.97 16 9 C -0.03 -0.56 3.12 -89.94 -0.28 -0.84 16 10 H 0.10 1.89 8.00 -51.93 -0.42 1.47 16 11 C 0.04 0.74 6.15 -82.85 -0.51 0.23 16 12 C -0.07 -1.00 10.56 -16.56 -0.17 -1.17 16 13 N -0.47 -6.07 3.15 -125.99 -0.40 -6.47 16 14 C 0.08 0.58 11.18 59.85 0.67 1.25 16 15 C 0.18 2.63 12.56 -90.37 -1.14 1.50 16 16 N -0.47 -9.05 11.25 -10.87 -0.12 -9.18 16 17 C 0.19 3.85 3.15 -65.79 -0.21 3.64 16 18 H 0.06 1.38 7.99 -51.93 -0.41 0.96 16 19 N -0.70 -17.73 5.24 -51.36 -0.27 -18.00 16 20 C -0.24 -6.65 9.96 -15.06 -0.15 -6.80 16 21 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 22 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 23 N -0.93 -28.16 13.06 55.49 0.72 -27.44 16 24 Si 0.90 22.52 29.55 -169.99 -5.02 17.50 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 26 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 28 C 0.08 1.43 5.85 -2.54 -0.01 1.42 16 29 N -0.24 -3.69 9.35 33.42 0.31 -3.37 16 30 N -0.38 -4.35 6.83 33.50 0.23 -4.12 16 31 H 0.44 3.55 8.96 -190.44 -1.71 1.84 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.16 1.87 8.06 -52.49 -0.42 1.45 16 36 H 0.07 1.04 5.93 -51.93 -0.31 0.73 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.17 2.17 6.87 -52.49 -0.36 1.80 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.20 2.21 8.06 -52.49 -0.42 1.79 16 43 H 0.39 10.64 7.76 -40.82 -0.32 10.32 16 44 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 45 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 46 H 0.09 1.73 6.20 -51.93 -0.32 1.41 16 LS Contribution 387.09 15.07 5.83 5.83 Total: -1.00 -37.33 387.09 -10.04 -47.38 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -7.62 Total: 11.92 kcal Atomic # 6 Polarization: 10.90 SS G_CDS: -3.23 Total: 7.67 kcal Atomic # 7 Polarization: -79.55 SS G_CDS: -0.09 Total: -79.64 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.33 -10.04 -47.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070472749.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.667 kcal (2) G-P(sol) polarization free energy of solvation -37.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds