Wall clock time and date at job start Wed Apr 1 2020 03:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33323 * 126.10489 * 2 1 4 4 C 1.30862 * 109.68519 * 180.02562 * 3 2 1 5 5 N 1.34491 * 109.16156 * 0.26179 * 4 3 2 6 6 H 0.96998 * 126.47518 * 179.72971 * 5 4 3 7 7 C 1.36660 * 126.10999 * 180.02562 * 2 1 3 8 8 C 1.46764 * 126.84470 * 359.96205 * 7 2 1 9 9 O 1.21684 * 119.99791 * 6.15759 * 8 7 2 10 10 N 1.34777 * 119.99993 * 186.15906 * 8 7 2 11 11 C 1.48118 * 127.03230 * 185.25122 * 10 8 7 12 12 C 1.54594 * 103.42418 * 219.28749 * 11 10 8 13 13 H 1.09000 * 110.57504 * 81.16908 * 12 11 10 14 14 C 1.50695 * 110.83605 * 204.44709 * 12 11 10 15 15 C 1.34667 * 125.98879 * 28.27787 * 14 12 11 16 16 N 1.36885 * 106.81807 * 179.84740 * 15 14 12 17 17 C 1.46500 * 126.39741 * 180.11805 * 16 15 14 18 18 C 1.35043 * 107.20427 * 0.41620 * 16 15 14 19 19 N 1.30499 * 108.70011 * 359.73698 * 18 16 15 20 20 C 1.54623 * 102.91179 * 322.86985 * 12 11 10 21 21 H 1.09000 * 110.32251 * 262.80529 * 20 12 11 22 22 N 1.46502 * 110.32660 * 140.58911 * 20 12 11 23 23 C 1.36931 * 119.99822 * 157.92527 * 22 20 12 24 24 H 1.08000 * 120.00406 * 359.97438 * 23 22 20 25 25 C 1.38812 * 120.00081 * 180.02562 * 23 22 20 26 26 N 1.31624 * 120.00032 * 359.97438 * 25 23 22 27 27 Si 1.86802 * 120.00046 * 180.02562 * 25 23 22 28 28 H 1.48491 * 109.47312 * 59.99884 * 27 25 23 29 29 H 1.48499 * 109.46941 * 180.02562 * 27 25 23 30 30 H 1.48505 * 109.46928 * 299.99600 * 27 25 23 31 31 C 1.47481 * 127.03472 * 5.57103 * 10 8 7 32 32 H 1.08998 * 109.46847 * 89.97769 * 1 2 3 33 33 H 1.09010 * 109.46772 * 209.97306 * 1 2 3 34 34 H 1.08996 * 109.47196 * 329.97344 * 1 2 3 35 35 H 1.07998 * 125.41709 * 180.02562 * 4 3 2 36 36 H 1.09002 * 110.66536 * 337.77278 * 11 10 8 37 37 H 1.08998 * 110.66253 * 100.88688 * 11 10 8 38 38 H 1.08003 * 126.59499 * 359.96101 * 15 14 12 39 39 H 1.09000 * 109.47683 * 270.32476 * 17 16 15 40 40 H 1.08997 * 109.47206 * 30.32751 * 17 16 15 41 41 H 1.09000 * 109.46980 * 150.32371 * 17 16 15 42 42 H 1.08000 * 125.64718 * 179.76673 * 18 16 15 43 43 H 0.97001 * 119.99958 * 337.92652 * 22 20 12 44 44 H 0.97001 * 119.99811 * 180.02562 * 26 25 23 45 45 H 1.08999 * 109.91129 * 273.87466 * 31 10 8 46 46 H 1.08996 * 109.91269 * 34.96244 * 31 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2926 1.0772 0.0000 4 6 3.5479 0.7073 -0.0006 5 7 3.6122 -0.6361 -0.0067 6 1 4.4189 -1.1747 -0.0122 7 6 2.3124 -1.1041 -0.0005 8 6 1.8822 -2.5072 -0.0003 9 8 0.7020 -2.7818 -0.1128 10 7 2.7942 -3.4917 0.1243 11 6 2.5503 -4.9500 0.0365 12 6 3.4620 -5.5335 1.1403 13 1 2.9846 -5.4480 2.1164 14 6 3.8153 -6.9676 0.8411 15 6 3.8976 -7.5236 -0.3826 16 7 4.2467 -8.8344 -0.1994 17 6 4.4550 -9.8336 -1.2503 18 6 4.3566 -9.0363 1.1313 19 7 4.0973 -7.9154 1.7473 20 6 4.7167 -4.6331 1.0638 21 1 5.4907 -5.1124 0.4643 22 7 5.2191 -4.3449 2.4094 23 6 6.5241 -3.9701 2.5873 24 1 7.1831 -3.8874 1.7357 25 6 7.0003 -3.6976 3.8624 26 7 6.1974 -3.7988 4.9004 27 14 8.7804 -3.1857 4.1050 28 1 9.0432 -1.9350 3.3489 29 1 9.0365 -2.9547 5.5493 30 1 9.6766 -4.2612 3.6096 31 6 4.2380 -3.3375 0.3826 32 1 -0.3633 0.0004 -1.0277 33 1 -0.3633 -0.8903 0.5135 34 1 -0.3633 0.8897 0.5142 35 1 4.3970 1.3746 -0.0003 36 1 1.5045 -5.1782 0.2422 37 1 2.8428 -5.3306 -0.9421 38 1 3.7236 -7.0297 -1.3272 39 1 3.5119 -10.3353 -1.4670 40 1 4.8204 -9.3419 -2.1519 41 1 5.1879 -10.5671 -0.9141 42 1 4.6165 -9.9704 1.6069 43 1 4.6273 -4.4195 3.1744 44 1 6.5301 -3.6080 5.7914 45 1 4.7701 -3.1941 -0.5578 46 1 4.4086 -2.4845 1.0393 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070570543.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:03 Heat of formation + Delta-G solvation = 96.888290 kcal Electronic energy + Delta-G solvation = -30392.661791 eV Core-core repulsion = 26319.506200 eV Total energy + Delta-G solvation = -4073.155591 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.26742 -42.95298 -40.77337 -38.85346 -35.87911 -35.12076 -34.33998 -33.28453 -32.52144 -31.83567 -29.64752 -28.95292 -28.36068 -27.40515 -26.03921 -24.84876 -23.42590 -22.39595 -22.15458 -21.73151 -20.75661 -20.47270 -19.13264 -18.73715 -18.02456 -17.62823 -16.96960 -16.71172 -16.66042 -16.39105 -15.97426 -15.53225 -15.47112 -15.30177 -14.95318 -14.85287 -14.67217 -14.32657 -13.98601 -13.77726 -13.71607 -13.60199 -13.35903 -13.27992 -13.23151 -13.09560 -12.84882 -12.61025 -12.51823 -12.19564 -11.91672 -11.73085 -11.53021 -11.05666 -10.99595 -10.94533 -10.74099 -10.38121 -9.96939 -9.47102 -9.30658 -8.93613 -7.91715 -5.22224 0.25502 1.18601 1.47483 1.50606 1.56707 1.69094 1.83471 2.05544 2.09793 2.21009 2.24526 2.56528 3.35069 3.37300 3.51359 3.62571 3.73980 3.89485 3.95597 4.03323 4.10672 4.13150 4.21816 4.30698 4.34480 4.40424 4.52781 4.55610 4.67617 4.70020 4.72505 4.78769 4.81148 4.83409 4.95992 5.01244 5.03773 5.10773 5.35451 5.38753 5.52953 5.55783 5.85706 6.25889 6.28523 6.35514 6.41300 6.86125 6.97776 7.30498 7.33301 8.05834 8.30455 9.31415 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.006935 B = 0.004607 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4036.261112 B = 6075.683846 C = 9379.512921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.077 3.923 3 N -0.529 5.529 4 C 0.232 3.768 5 N -0.547 5.547 6 H 0.434 0.566 7 C -0.108 4.108 8 C 0.610 3.390 9 O -0.559 6.559 10 N -0.614 5.614 11 C 0.128 3.872 12 C -0.016 4.016 13 H 0.054 0.946 14 C -0.006 4.006 15 C -0.044 4.044 16 N -0.460 5.460 17 C 0.068 3.932 18 C 0.174 3.826 19 N -0.538 5.538 20 C 0.184 3.816 21 H 0.071 0.929 22 N -0.722 5.722 23 C -0.238 4.238 24 H 0.085 0.915 25 C -0.072 4.072 26 N -0.970 5.970 27 Si 0.970 3.030 28 H -0.269 1.269 29 H -0.304 1.304 30 H -0.281 1.281 31 C 0.072 3.928 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.258 0.742 36 H 0.079 0.921 37 H 0.108 0.892 38 H 0.204 0.796 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.230 0.770 43 H 0.369 0.631 44 H 0.248 0.752 45 H 0.095 0.905 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.107 -5.729 -19.055 20.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.057 4.057 3 N -0.250 5.250 4 C -0.053 4.053 5 N -0.155 5.155 6 H 0.279 0.721 7 C -0.224 4.224 8 C 0.400 3.600 9 O -0.439 6.439 10 N -0.346 5.346 11 C 0.006 3.994 12 C -0.037 4.037 13 H 0.073 0.927 14 C -0.135 4.135 15 C -0.178 4.178 16 N -0.142 5.142 17 C -0.073 4.073 18 C -0.109 4.109 19 N -0.257 5.257 20 C 0.073 3.927 21 H 0.089 0.911 22 N -0.360 5.360 23 C -0.370 4.370 24 H 0.103 0.897 25 C -0.264 4.264 26 N -0.620 5.620 27 Si 0.799 3.201 28 H -0.195 1.195 29 H -0.231 1.231 30 H -0.207 1.207 31 C -0.054 4.054 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.274 0.726 36 H 0.098 0.902 37 H 0.126 0.874 38 H 0.221 0.779 39 H 0.109 0.891 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.247 0.753 43 H 0.200 0.800 44 H 0.057 0.943 45 H 0.113 0.887 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.828 -5.026 -18.442 19.494 hybrid contribution 1.539 -0.960 0.581 1.905 sum -2.288 -5.985 -17.861 18.976 Atomic orbital electron populations 1.20216 0.85996 1.03137 1.03361 1.21370 0.97670 0.87020 0.99686 1.70136 1.01608 1.30499 1.22737 1.26050 0.97798 0.82509 0.98896 1.43909 1.07959 1.09317 1.54353 0.72126 1.20755 0.85628 0.94327 1.21703 1.16600 0.84431 0.82664 0.76277 1.90764 1.16683 1.83198 1.53217 1.48617 1.09039 1.06853 1.70100 1.22406 0.99955 0.78090 0.98976 1.20455 0.95762 0.89187 0.98343 0.92728 1.20139 1.08466 0.94719 0.90167 1.22704 1.09591 0.85181 1.00285 1.45653 1.50360 1.09877 1.08291 1.22369 1.04402 0.90924 0.89584 1.25487 1.05157 0.99677 0.80552 1.70121 1.19290 1.00730 1.35521 1.21201 0.93605 0.90962 0.86917 0.91092 1.42601 1.09544 1.80907 1.02917 1.19587 0.88181 1.36386 0.92819 0.89699 1.25554 1.01661 1.03643 0.95585 1.69853 1.36554 1.57184 0.98375 0.85278 0.80338 0.78510 0.75993 1.19487 1.23078 1.20740 1.23431 0.79564 1.01772 1.00639 0.89852 0.91015 0.90190 0.72585 0.90250 0.87390 0.77882 0.89092 0.88125 0.87820 0.75349 0.79962 0.94292 0.88706 0.91470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.92 9.82 71.24 0.70 -1.22 16 2 C 0.08 2.44 7.14 41.96 0.30 2.74 16 3 N -0.53 -15.55 11.20 -187.59 -2.10 -17.66 16 4 C 0.23 5.34 13.01 180.33 2.35 7.68 16 5 N -0.55 -13.91 5.47 -188.04 -1.03 -14.94 16 6 H 0.43 9.71 5.65 -92.71 -0.52 9.19 16 7 C -0.11 -3.41 6.85 40.01 0.27 -3.14 16 8 C 0.61 20.72 7.85 86.47 0.68 21.40 16 9 O -0.56 -21.19 15.09 -4.30 -0.06 -21.26 16 10 N -0.61 -18.78 3.29 -814.70 -2.68 -21.46 16 11 C 0.13 3.57 6.38 86.61 0.55 4.12 16 12 C -0.02 -0.55 3.28 -10.45 -0.03 -0.59 16 13 H 0.05 2.31 7.74 -2.39 -0.02 2.29 16 14 C -0.01 -0.19 6.04 41.39 0.25 0.06 16 15 C -0.04 -0.99 10.68 83.09 0.89 -0.10 16 16 N -0.46 -8.84 3.15 -552.53 -1.74 -10.58 16 17 C 0.07 0.52 11.18 127.77 1.43 1.95 16 18 C 0.17 4.43 12.56 180.26 2.26 6.69 16 19 N -0.54 -19.58 11.25 -188.32 -2.12 -21.70 16 20 C 0.18 6.68 3.21 45.88 0.15 6.83 16 21 H 0.07 2.53 7.81 -2.39 -0.02 2.52 16 22 N -0.72 -34.96 5.08 -318.72 -1.62 -36.58 16 23 C -0.24 -12.38 9.97 84.03 0.84 -11.54 16 24 H 0.09 4.06 7.83 -2.91 -0.02 4.04 16 25 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 26 N -0.97 -59.55 13.06 21.65 0.28 -59.27 16 27 Si 0.97 44.56 29.55 68.60 2.03 46.59 16 28 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 29 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 30 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 31 C 0.07 2.15 5.19 86.53 0.45 2.60 16 32 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.07 2.18 6.62 -2.38 -0.02 2.16 16 34 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.26 3.20 8.06 -2.91 -0.02 3.17 16 36 H 0.08 2.35 7.81 -2.39 -0.02 2.33 16 37 H 0.11 2.21 6.39 -2.39 -0.02 2.20 16 38 H 0.20 3.03 6.91 -2.91 -0.02 3.01 16 39 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.23 3.99 8.06 -2.91 -0.02 3.97 16 43 H 0.37 20.59 7.54 -92.71 -0.70 19.89 16 44 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 45 H 0.10 2.16 7.98 -2.39 -0.02 2.14 16 46 H 0.07 2.28 5.93 -2.39 -0.01 2.26 16 Total: -1.00 -82.95 380.47 2.32 -80.63 By element: Atomic # 1 Polarization: 42.46 SS G_CDS: -0.18 Total: 42.28 kcal Atomic # 6 Polarization: 22.39 SS G_CDS: 11.55 Total: 33.93 kcal Atomic # 7 Polarization: -171.17 SS G_CDS: -11.01 Total: -182.18 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.06 Total: -21.26 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -82.95 2.32 -80.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070570543.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.520 kcal (2) G-P(sol) polarization free energy of solvation -82.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds