Wall clock time and date at job start Wed Apr 1 2020 02:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99683 * 2 1 4 4 H 1.48504 * 109.46961 * 269.99930 * 3 2 1 5 5 H 1.48493 * 109.47324 * 29.99886 * 3 2 1 6 6 H 1.48503 * 109.47003 * 150.00094 * 3 2 1 7 7 C 1.38806 * 120.00406 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00403 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99784 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00017 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.47297 * 35.00014 * 10 9 7 12 12 C 1.53006 * 109.46998 * 275.00375 * 10 9 7 13 13 C 1.52999 * 109.46626 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.46991 * 60.00378 * 13 12 10 15 15 C 1.52996 * 109.47131 * 299.99311 * 14 13 12 16 16 C 1.52997 * 109.47007 * 155.00515 * 10 9 7 17 17 H 1.08996 * 109.46952 * 60.00083 * 16 10 9 18 18 N 1.46496 * 109.46953 * 299.99748 * 16 10 9 19 19 C 1.34781 * 119.99775 * 154.99854 * 18 16 10 20 20 O 1.21281 * 120.00039 * 0.02562 * 19 18 16 21 21 C 1.50696 * 120.00051 * 179.97438 * 19 18 16 22 22 C 1.50695 * 109.47286 * 180.02562 * 21 19 18 23 23 N 1.32619 * 125.18509 * 269.69447 * 22 21 19 24 24 C 1.32830 * 109.75722 * 179.87994 * 23 22 21 25 25 N 1.33816 * 132.50668 * 180.10929 * 24 23 22 26 26 C 1.31345 * 120.86630 * 180.29731 * 25 24 23 27 27 C 1.40043 * 120.31324 * 359.97438 * 26 25 24 28 28 C 1.35775 * 119.24133 * 0.02562 * 27 26 25 29 29 N 1.35979 * 119.02199 * 359.97438 * 28 27 26 30 30 N 1.31180 * 125.18779 * 90.00430 * 22 21 19 31 31 H 0.96997 * 120.00066 * 0.02562 * 1 2 3 32 32 H 0.96995 * 119.99690 * 0.02562 * 9 7 2 33 33 H 1.08993 * 109.46955 * 300.00226 * 12 10 9 34 34 H 1.09000 * 109.47050 * 60.00054 * 12 10 9 35 35 H 1.09002 * 109.46719 * 180.02562 * 13 12 10 36 36 H 1.08993 * 109.47839 * 299.99931 * 13 12 10 37 37 H 1.09001 * 109.47289 * 179.97438 * 14 13 12 38 38 H 1.09000 * 109.47611 * 59.99933 * 14 13 12 39 39 H 1.08996 * 109.47452 * 300.00000 * 15 14 13 40 40 H 1.09000 * 109.47054 * 180.02562 * 15 14 13 41 41 H 0.97001 * 120.00575 * 335.00735 * 18 16 10 42 42 H 1.08994 * 109.47397 * 300.00471 * 21 19 18 43 43 H 1.09005 * 109.47315 * 60.00526 * 21 19 18 44 44 H 1.08008 * 119.84447 * 179.97438 * 26 25 24 45 45 H 1.08004 * 120.37782 * 179.97438 * 27 26 25 46 46 H 1.07998 * 120.49182 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 2.9689 -3.5505 0.5889 12 6 2.4222 -4.0355 -1.4376 13 6 3.1877 -5.3602 -1.4375 14 6 2.3110 -6.4558 -0.8278 15 6 1.9470 -6.0771 0.6092 16 6 1.1810 -4.7521 0.6090 17 1 0.2704 -4.8583 0.0194 18 7 0.8325 -4.3894 1.9849 19 6 -0.2856 -4.8863 2.5502 20 8 -1.0030 -5.6340 1.9199 21 6 -0.6438 -4.5138 3.9657 22 6 -1.9289 -5.1977 4.3553 23 7 -3.1438 -4.6918 4.1917 24 6 -4.0522 -5.5520 4.6382 25 7 -5.3886 -5.5090 4.6919 26 6 -6.0752 -6.5084 5.1968 27 6 -5.4158 -7.6416 5.6891 28 6 -4.0600 -7.6943 5.6387 29 7 -3.3782 -6.6432 5.1101 30 7 -2.0160 -6.3817 4.9132 31 1 -0.4850 0.8400 -0.0004 32 1 0.3557 -2.3880 -0.0005 33 1 1.5115 -4.1417 -2.0270 34 1 3.0471 -3.2551 -1.8718 35 1 3.4474 -5.6298 -2.4612 36 1 4.0984 -5.2536 -0.8481 37 1 2.8562 -7.3996 -0.8280 38 1 1.4003 -6.5625 -1.4172 39 1 2.8577 -5.9704 1.1986 40 1 1.3228 -6.8579 1.0437 41 1 1.4063 -3.7916 2.4891 42 1 0.1539 -4.8301 4.6377 43 1 -0.7710 -3.4335 4.0360 44 1 -7.1534 -6.4561 5.2324 45 1 -5.9793 -8.4639 6.1048 46 1 -3.5309 -8.5585 6.0123 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085420821.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:53 Heat of formation + Delta-G solvation = 77.113905 kcal Electronic energy + Delta-G solvation = -29676.329840 eV Core-core repulsion = 25602.316767 eV Total energy + Delta-G solvation = -4074.013073 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.99958 -41.17459 -39.91136 -39.10616 -35.80421 -35.64507 -35.14838 -33.52249 -32.97992 -31.82249 -31.18972 -30.08522 -29.01631 -25.74791 -25.59175 -24.92559 -23.77753 -22.63343 -22.30289 -21.40069 -20.73361 -19.49112 -19.22463 -19.06785 -18.33228 -17.56548 -17.42766 -16.99778 -16.64994 -16.27307 -15.75398 -15.51158 -15.37067 -15.12313 -14.91454 -14.67135 -14.54440 -14.23289 -14.07995 -13.78921 -13.72809 -13.71666 -13.51406 -13.15978 -13.08882 -12.91525 -12.78458 -12.24018 -12.17080 -12.02762 -12.00646 -11.64711 -11.44104 -11.36498 -11.20418 -11.05155 -11.00317 -10.85279 -10.60129 -9.98102 -9.92431 -8.98100 -7.88517 -5.18270 -0.49042 -0.34643 0.86346 1.30277 1.49377 1.50555 1.58157 1.58990 2.11249 2.35759 2.43837 2.58698 2.78629 3.37570 3.44379 3.51005 3.68214 3.76562 3.86540 3.96548 4.14073 4.14414 4.25988 4.28572 4.32303 4.39452 4.44172 4.50136 4.55034 4.59411 4.69825 4.84059 4.94640 5.01239 5.03148 5.06705 5.16994 5.23675 5.29400 5.30846 5.38534 5.46213 5.53337 5.57681 5.68001 6.30234 6.38920 6.55128 6.80596 7.21891 7.36831 8.10690 8.34904 9.34389 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.011147 B = 0.002822 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.187354 B = 9918.238409 C =11826.980332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.076 4.076 3 Si 0.969 3.031 4 H -0.293 1.293 5 H -0.302 1.302 6 H -0.264 1.264 7 C -0.229 4.229 8 H 0.082 0.918 9 N -0.733 5.733 10 C 0.173 3.827 11 H 0.065 0.935 12 C -0.129 4.129 13 C -0.108 4.108 14 C -0.111 4.111 15 C -0.113 4.113 16 C 0.149 3.851 17 H 0.046 0.954 18 N -0.697 5.697 19 C 0.524 3.476 20 O -0.586 6.586 21 C -0.049 4.049 22 C 0.288 3.712 23 N -0.569 5.569 24 C 0.419 3.581 25 N -0.500 5.500 26 C 0.210 3.790 27 C -0.188 4.188 28 C 0.144 3.856 29 N -0.332 5.332 30 N -0.341 5.341 31 H 0.247 0.753 32 H 0.367 0.633 33 H 0.036 0.964 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.048 0.952 39 H 0.085 0.915 40 H 0.053 0.947 41 H 0.414 0.586 42 H 0.161 0.839 43 H 0.135 0.865 44 H 0.239 0.761 45 H 0.236 0.764 46 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.744 -22.073 14.502 26.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.799 3.201 4 H -0.221 1.221 5 H -0.229 1.229 6 H -0.188 1.188 7 C -0.361 4.361 8 H 0.100 0.900 9 N -0.371 5.371 10 C 0.064 3.936 11 H 0.083 0.917 12 C -0.170 4.170 13 C -0.147 4.147 14 C -0.149 4.149 15 C -0.152 4.152 16 C 0.044 3.956 17 H 0.064 0.936 18 N -0.347 5.347 19 C 0.310 3.690 20 O -0.466 6.466 21 C -0.091 4.091 22 C 0.007 3.993 23 N -0.302 5.302 24 C 0.058 3.942 25 N -0.217 5.217 26 C 0.028 3.972 27 C -0.212 4.212 28 C 0.009 3.991 29 N -0.111 5.111 30 N -0.174 5.174 31 H 0.056 0.944 32 H 0.198 0.802 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.106 0.894 38 H 0.067 0.933 39 H 0.103 0.897 40 H 0.071 0.929 41 H 0.250 0.750 42 H 0.178 0.822 43 H 0.152 0.848 44 H 0.255 0.745 45 H 0.252 0.748 46 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -4.650 -21.648 13.692 26.033 hybrid contribution 0.007 1.089 0.033 1.090 sum -4.643 -20.559 13.725 25.151 Atomic orbital electron populations 1.69859 1.06771 1.25692 1.59815 1.25525 0.96116 1.00991 1.04222 0.85201 0.77887 0.79942 0.77078 1.22104 1.22931 1.18820 1.19586 0.91424 0.84733 1.40308 0.90009 1.42616 1.05128 1.00833 1.88549 1.20683 0.93943 0.84135 0.94825 0.91733 1.22105 0.99381 0.97600 0.97901 1.21509 0.98406 0.93162 1.01574 1.21480 0.99703 0.99217 0.94504 1.21803 1.00128 0.94804 0.98488 1.21172 0.97447 0.95182 0.81822 0.93607 1.45750 1.24820 1.48989 1.15125 1.20376 0.80441 0.79732 0.88480 1.90676 1.51821 1.38705 1.65421 1.20131 0.91395 1.02934 0.94666 1.23769 0.93982 0.89281 0.92274 1.70588 0.99027 1.31132 1.29468 1.22877 0.91678 0.84551 0.95056 1.68101 1.00144 1.32020 1.21454 1.24671 1.03415 0.85522 0.83617 1.22692 0.91493 1.02981 1.04019 1.23205 0.93730 0.90373 0.91813 1.48877 1.06984 1.16034 1.39211 1.78285 0.90229 1.18251 1.30629 0.94428 0.80198 0.94505 0.92949 0.90918 0.90562 0.89362 0.93326 0.89682 0.92867 0.75006 0.82190 0.84759 0.74490 0.74779 0.76625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.79 13.06 21.65 0.28 -60.51 16 2 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 3 Si 0.97 46.18 29.55 68.60 2.03 48.21 16 4 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 5 H -0.30 -14.78 7.11 99.48 0.71 -14.08 16 6 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.23 -12.25 9.93 84.03 0.83 -11.41 16 8 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 9 N -0.73 -36.18 4.95 -322.93 -1.60 -37.78 16 10 C 0.17 6.54 2.29 44.99 0.10 6.64 16 11 H 0.06 2.30 8.08 -2.39 -0.02 2.28 16 12 C -0.13 -4.50 5.50 30.60 0.17 -4.33 16 13 C -0.11 -2.74 5.92 30.59 0.18 -2.56 16 14 C -0.11 -2.74 5.92 30.59 0.18 -2.56 16 15 C -0.11 -3.14 5.50 30.61 0.17 -2.98 16 16 C 0.15 5.27 1.98 45.01 0.09 5.36 16 17 H 0.05 1.98 7.58 -2.39 -0.02 1.96 16 18 N -0.70 -23.44 4.91 -442.47 -2.17 -25.61 16 19 C 0.52 19.25 7.79 87.66 0.68 19.93 16 20 O -0.59 -26.62 15.70 -3.03 -0.05 -26.67 16 21 C -0.05 -1.49 6.33 29.10 0.18 -1.31 16 22 C 0.29 10.40 6.59 138.68 0.91 11.31 16 23 N -0.57 -23.15 11.25 -191.24 -2.15 -25.30 16 24 C 0.42 14.12 8.99 261.60 2.35 16.47 16 25 N -0.50 -13.29 10.48 -197.63 -2.07 -15.36 16 26 C 0.21 2.28 11.27 85.20 0.96 3.24 16 27 C -0.19 -0.92 10.06 22.14 0.22 -0.70 16 28 C 0.14 1.86 11.32 83.48 0.94 2.81 16 29 N -0.33 -9.11 3.91 -197.70 -0.77 -9.88 16 30 N -0.34 -11.16 12.78 -51.45 -0.66 -11.82 16 31 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 32 H 0.37 20.74 7.80 -92.71 -0.72 20.02 16 33 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.41 12.34 8.60 -92.71 -0.80 11.54 16 42 H 0.16 3.36 8.14 -2.39 -0.02 3.34 16 43 H 0.13 3.93 8.14 -2.38 -0.02 3.91 16 44 H 0.24 -0.05 8.06 -2.91 -0.02 -0.08 16 45 H 0.24 -1.76 8.06 -2.91 -0.02 -1.78 16 46 H 0.22 1.00 8.06 -2.91 -0.02 0.98 16 Total: -1.00 -93.82 386.58 0.80 -93.03 By element: Atomic # 1 Polarization: 36.17 SS G_CDS: -0.50 Total: 35.67 kcal Atomic # 6 Polarization: 27.56 SS G_CDS: 8.45 Total: 36.01 kcal Atomic # 7 Polarization: -177.11 SS G_CDS: -9.14 Total: -186.25 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -0.05 Total: -26.67 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -93.82 0.80 -93.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085420821.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.140 kcal (2) G-P(sol) polarization free energy of solvation -93.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds