Wall clock time and date at job start Wed Apr 1 2020 02:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.40173 * 119.82545 * 2 1 4 4 C 1.35684 * 119.26944 * 179.76713 * 3 2 1 5 5 C 1.50698 * 120.48302 * 180.24220 * 4 3 2 6 6 N 1.36160 * 119.02842 * 0.50150 * 4 3 2 7 7 N 1.40103 * 133.22165 * 179.76928 * 6 4 3 8 8 C 1.31994 * 106.92646 * 179.97438 * 7 6 4 9 9 C 1.48120 * 125.32375 * 180.02562 * 8 7 6 10 10 O 1.21521 * 120.00513 * 355.03875 * 9 8 7 11 11 N 1.34780 * 120.00038 * 175.03918 * 9 8 7 12 12 C 1.46502 * 119.99879 * 5.33612 * 11 9 8 13 13 C 1.46500 * 120.00418 * 185.32868 * 11 9 8 14 14 C 1.52999 * 109.46889 * 84.35285 * 13 11 9 15 15 H 1.09000 * 112.96857 * 311.13736 * 14 13 11 16 16 C 1.53947 * 113.76868 * 179.45285 * 14 13 11 17 17 C 1.53942 * 86.29148 * 222.09357 * 16 14 13 18 18 N 1.47582 * 113.76818 * 82.81401 * 14 13 11 19 19 C 1.36946 * 134.49155 * 318.93071 * 18 14 13 20 20 H 1.08000 * 119.99884 * 2.38445 * 19 18 14 21 21 C 1.38810 * 119.99993 * 182.38649 * 19 18 14 22 22 N 1.31619 * 119.99985 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00092 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47116 * 89.99644 * 23 21 19 25 25 H 1.48494 * 109.47211 * 210.00104 * 23 21 19 26 26 H 1.48507 * 109.46830 * 330.00051 * 23 21 19 27 27 N 1.33469 * 109.34949 * 0.02562 * 8 7 6 28 28 C 1.32499 * 109.75557 * 359.97438 * 27 8 7 29 29 N 1.31258 * 119.81759 * 180.27259 * 2 1 3 30 30 H 1.09003 * 109.47175 * 269.73103 * 1 2 3 31 31 H 1.09002 * 109.47156 * 29.72526 * 1 2 3 32 32 H 1.08996 * 109.47628 * 149.72523 * 1 2 3 33 33 H 1.07997 * 120.36358 * 0.02562 * 3 2 1 34 34 H 1.09000 * 109.47517 * 270.26343 * 5 4 3 35 35 H 1.09000 * 109.47261 * 30.26281 * 5 4 3 36 36 H 1.09000 * 109.47302 * 150.25734 * 5 4 3 37 37 H 1.08999 * 109.47517 * 56.66650 * 12 11 9 38 38 H 1.09000 * 109.47633 * 176.67560 * 12 11 9 39 39 H 1.09007 * 109.46628 * 296.67351 * 12 11 9 40 40 H 1.08995 * 109.47329 * 204.35725 * 13 11 9 41 41 H 1.09003 * 109.46821 * 324.35555 * 13 11 9 42 42 H 1.08994 * 113.74089 * 336.44016 * 16 14 13 43 43 H 1.09004 * 113.74004 * 107.64326 * 16 14 13 44 44 H 1.09000 * 113.76893 * 137.90793 * 17 16 14 45 45 H 1.08992 * 113.77438 * 269.19502 * 17 16 14 46 46 H 0.96999 * 120.00053 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2041 1.2161 0.0000 4 6 3.5609 1.2029 0.0048 5 6 4.3379 2.4941 0.0104 6 7 4.2100 0.0060 -0.0009 7 7 5.5649 -0.3506 -0.0025 8 6 5.6151 -1.6696 -0.0083 9 6 6.8553 -2.4795 -0.0114 10 8 7.9374 -1.9335 -0.0995 11 7 6.7837 -3.8220 0.0836 12 6 5.4792 -4.4886 0.0721 13 6 8.0103 -4.6148 0.1983 14 6 8.4487 -4.6671 1.6632 15 1 8.4643 -3.6859 2.1378 16 6 9.7275 -5.4910 1.8992 17 6 9.0139 -6.0572 3.1402 18 7 7.7535 -5.7000 2.4555 19 6 6.4611 -6.1472 2.5263 20 1 5.7096 -5.7326 1.8707 21 6 6.1168 -7.1332 3.4407 22 7 7.0328 -7.6387 4.2394 23 14 4.3540 -7.7436 3.5368 24 1 4.1759 -8.8897 2.6095 25 1 4.0559 -8.1788 4.9248 26 1 3.4290 -6.6473 3.1523 27 7 4.3735 -2.1594 -0.0110 28 6 3.4993 -1.1637 -0.0064 29 7 2.1596 -1.1388 -0.0054 30 1 -0.3634 -0.0048 1.0277 31 1 -0.3633 0.8924 -0.5096 32 1 -0.3634 -0.8874 -0.5181 33 1 1.6672 2.1531 0.0004 34 1 4.5249 2.8102 -1.0158 35 1 3.7629 3.2620 0.5280 36 1 5.2880 2.3442 0.5233 37 1 4.9395 -4.2154 -0.8346 38 1 5.6228 -5.5688 0.0980 39 1 4.9045 -4.1774 0.9446 40 1 7.8240 -5.6266 -0.1616 41 1 8.7971 -4.1554 -0.4002 42 1 9.9193 -6.2347 1.1258 43 1 10.6031 -4.8851 2.1326 44 1 9.1529 -7.1297 3.2757 45 1 9.1963 -5.4863 4.0505 46 1 6.7921 -8.3274 4.8786 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085958597.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:27 Heat of formation + Delta-G solvation = 178.147853 kcal Electronic energy + Delta-G solvation = -30323.949694 eV Core-core repulsion = 26254.317782 eV Total energy + Delta-G solvation = -4069.631912 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.14649 -39.97477 -38.90923 -37.63179 -35.76417 -35.05259 -32.73048 -32.15121 -31.66211 -29.44647 -28.76182 -28.23665 -27.72626 -26.33298 -24.80304 -23.26386 -23.19970 -22.36774 -21.59245 -19.54780 -19.00572 -18.52052 -18.14485 -17.08215 -16.89700 -16.57446 -15.78206 -15.31814 -15.13126 -14.84918 -14.59494 -14.27962 -14.12501 -13.94713 -13.64093 -13.56248 -13.24994 -13.06389 -12.93914 -12.82908 -12.65671 -12.52413 -12.12869 -11.92017 -11.77692 -11.38257 -11.29389 -11.03596 -10.90364 -10.65608 -10.45994 -10.31928 -10.27513 -10.10379 -9.85697 -9.73498 -9.60310 -9.21679 -8.99264 -8.70287 -8.18809 -6.76990 -5.67366 -2.98015 0.03726 0.34693 1.49511 1.72839 2.78366 2.93280 3.09534 3.43862 3.45766 3.50317 3.51513 3.61348 3.85934 4.18140 4.41228 4.52423 4.63139 4.72837 4.76725 4.87923 5.05878 5.09989 5.19420 5.22066 5.43990 5.50278 5.63890 5.68138 5.74100 5.77608 5.82605 5.91502 5.93629 6.01695 6.13355 6.17926 6.30514 6.52992 6.58975 6.66740 6.78033 6.98311 7.15970 7.35505 7.48241 7.54014 7.66682 7.70694 8.08423 8.26962 9.14263 9.81654 10.72582 11.50382 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.011903 B = 0.003405 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.868286 B = 8222.155262 C = 9984.005753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.233 3.767 3 C -0.227 4.227 4 C 0.206 3.794 5 C -0.123 4.123 6 N -0.332 5.332 7 N -0.273 5.273 8 C 0.251 3.749 9 C 0.602 3.398 10 O -0.518 6.518 11 N -0.571 5.571 12 C 0.088 3.912 13 C 0.118 3.882 14 C 0.126 3.874 15 H 0.046 0.954 16 C -0.158 4.158 17 C 0.161 3.839 18 N -0.602 5.602 19 C -0.225 4.225 20 H 0.091 0.909 21 C -0.009 4.009 22 N -0.921 5.921 23 Si 0.901 3.099 24 H -0.288 1.288 25 H -0.292 1.292 26 H -0.279 1.279 27 N -0.489 5.489 28 C 0.447 3.553 29 N -0.456 5.456 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.173 0.827 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.063 0.937 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.092 0.908 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.053 0.947 44 H 0.070 0.930 45 H 0.024 0.976 46 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.939 20.048 -11.151 25.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.067 3.933 3 C -0.252 4.252 4 C 0.088 3.912 5 C -0.180 4.180 6 N -0.114 5.114 7 N -0.107 5.107 8 C -0.033 4.033 9 C 0.383 3.617 10 O -0.392 6.392 11 N -0.302 5.302 12 C -0.055 4.055 13 C -0.004 4.004 14 C 0.018 3.982 15 H 0.063 0.937 16 C -0.197 4.197 17 C 0.036 3.964 18 N -0.328 5.328 19 C -0.353 4.353 20 H 0.109 0.891 21 C -0.205 4.205 22 N -0.569 5.569 23 Si 0.731 3.269 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.205 1.205 27 N -0.223 5.223 28 C 0.087 3.913 29 N -0.173 5.173 30 H 0.114 0.886 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.191 0.809 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.111 0.889 37 H 0.081 0.919 38 H 0.106 0.894 39 H 0.092 0.908 40 H 0.110 0.890 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.071 0.929 44 H 0.088 0.912 45 H 0.042 0.958 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -10.167 19.147 -11.071 24.342 hybrid contribution -1.037 0.542 0.470 1.261 sum -11.204 19.688 -10.601 25.011 Atomic orbital electron populations 1.20889 0.86139 1.04897 1.04614 1.22062 0.98141 0.86808 0.86326 1.21623 0.91338 1.01418 1.10781 1.20900 0.92073 0.86569 0.91670 1.21081 1.01241 0.90674 1.04999 1.49092 1.07575 1.07960 1.46729 1.78860 0.88791 1.13360 1.29675 1.24330 0.93290 0.89426 0.96239 1.16346 0.84347 0.82057 0.78906 1.90805 1.26954 1.71264 1.50180 1.47604 1.09692 1.04214 1.68680 1.22185 0.82404 0.98313 1.02558 1.22144 0.84720 0.95014 0.98553 1.22619 0.91187 0.93532 0.90849 0.93708 1.23768 0.95573 0.99254 1.01075 1.22164 0.83177 0.99695 0.91345 1.46231 1.05088 1.37299 1.44215 1.19403 0.84362 1.15479 1.16010 0.89126 1.24772 0.97425 0.99963 0.98385 1.69834 1.31722 1.30617 1.24732 0.86277 0.84710 0.78881 0.77002 1.21523 1.21825 1.20502 1.71307 0.97652 1.25811 1.27512 1.22883 0.90217 0.81729 0.96488 1.67887 1.01732 1.28861 1.18792 0.88632 0.89240 0.89086 0.80929 0.88477 0.88364 0.88936 0.91872 0.89381 0.90815 0.89016 0.90221 0.90611 0.92886 0.91151 0.95795 0.93879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.45 10.19 36.00 0.37 -0.09 16 2 C 0.23 1.98 6.83 -82.11 -0.56 1.42 16 3 C -0.23 -1.46 9.39 -39.77 -0.37 -1.83 16 4 C 0.21 1.92 6.86 -81.59 -0.56 1.36 16 5 C -0.12 -0.72 10.12 36.00 0.36 -0.36 16 6 N -0.33 -4.83 3.91 -10.07 -0.04 -4.87 16 7 N -0.27 -4.82 12.67 32.02 0.41 -4.41 16 8 C 0.25 4.77 7.70 -156.78 -1.21 3.57 16 9 C 0.60 12.08 7.65 -12.20 -0.09 11.99 16 10 O -0.52 -11.22 16.71 5.35 0.09 -11.13 16 11 N -0.57 -11.04 2.89 -182.59 -0.53 -11.56 16 12 C 0.09 1.62 7.27 59.85 0.44 2.06 16 13 C 0.12 2.24 5.26 -4.04 -0.02 2.22 16 14 C 0.13 2.73 4.49 -66.86 -0.30 2.43 16 15 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 16 C -0.16 -3.10 7.86 -25.79 -0.20 -3.30 16 17 C 0.16 3.92 7.46 -2.85 -0.02 3.90 16 18 N -0.60 -15.47 3.59 -169.74 -0.61 -16.08 16 19 C -0.23 -6.19 10.29 -15.06 -0.15 -6.35 16 20 H 0.09 2.35 3.79 -52.49 -0.20 2.15 16 21 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 22 N -0.92 -27.74 11.46 55.49 0.64 -27.11 16 23 Si 0.90 22.44 29.55 -169.99 -5.02 17.42 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 27 N -0.49 -9.03 7.75 -12.23 -0.09 -9.13 16 28 C 0.45 7.26 8.99 -323.03 -2.90 4.36 16 29 N -0.46 -6.20 10.40 -10.01 -0.10 -6.31 16 30 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.09 0.11 8.09 -51.93 -0.42 -0.31 16 32 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.17 0.29 8.06 -52.49 -0.42 -0.14 16 34 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.10 0.25 8.09 -51.93 -0.42 -0.17 16 36 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 1.07 7.24 -51.93 -0.38 0.69 16 38 H 0.09 1.65 6.43 -51.93 -0.33 1.31 16 39 H 0.07 1.52 6.76 -51.93 -0.35 1.17 16 40 H 0.09 1.69 7.78 -51.93 -0.40 1.29 16 41 H 0.08 1.40 7.53 -51.93 -0.39 1.01 16 42 H 0.08 1.39 8.10 -51.93 -0.42 0.96 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.07 1.85 7.28 -51.93 -0.38 1.47 16 45 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 380.56 15.07 5.74 5.74 Total: -1.00 -37.40 380.56 -11.07 -48.47 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -6.21 Total: -2.05 kcal Atomic # 6 Polarization: 26.35 SS G_CDS: -5.33 Total: 21.02 kcal Atomic # 7 Polarization: -79.14 SS G_CDS: -0.33 Total: -79.47 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.09 Total: -11.13 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.40 -11.07 -48.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085958597.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 226.619 kcal (2) G-P(sol) polarization free energy of solvation -37.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 189.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 178.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds