Wall clock time and date at job start Wed Apr 1 2020 03:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.40166 * 119.82559 * 2 1 4 4 C 1.35678 * 119.27675 * 180.02562 * 3 2 1 5 5 C 1.50696 * 120.49041 * 179.97438 * 4 3 2 6 6 N 1.36169 * 119.02371 * 0.02562 * 4 3 2 7 7 N 1.40107 * 133.22056 * 180.24546 * 6 4 3 8 8 C 1.31990 * 106.92470 * 180.11618 * 7 6 4 9 9 C 1.48118 * 125.32406 * 179.91461 * 8 7 6 10 10 O 1.21525 * 120.00380 * 359.71400 * 9 8 7 11 11 N 1.34775 * 120.00148 * 179.72111 * 9 8 7 12 12 C 1.46504 * 120.00207 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.46983 * 179.97438 * 12 11 9 14 14 H 1.09002 * 112.85017 * 314.66585 * 13 12 11 15 15 C 1.53786 * 113.61503 * 85.86203 * 13 12 11 16 16 C 1.54049 * 86.98426 * 140.01654 * 15 13 12 17 17 H 1.08996 * 113.68970 * 89.12734 * 16 15 13 18 18 N 1.46497 * 113.61947 * 220.02008 * 16 15 13 19 19 C 1.36932 * 120.00371 * 252.49569 * 18 16 15 20 20 H 1.08002 * 120.00286 * 0.02562 * 19 18 16 21 21 C 1.38815 * 120.00368 * 179.97438 * 19 18 16 22 22 N 1.31617 * 119.99994 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 119.99711 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47029 * 89.99957 * 23 21 19 25 25 H 1.48499 * 109.46895 * 209.99791 * 23 21 19 26 26 H 1.48493 * 109.47198 * 329.99723 * 23 21 19 27 27 C 1.53781 * 113.61337 * 183.46996 * 13 12 11 28 28 N 1.33472 * 109.34913 * 359.64678 * 8 7 6 29 29 C 1.32500 * 109.75753 * 0.23097 * 28 8 7 30 30 N 1.31263 * 119.81932 * 180.02562 * 2 1 3 31 31 H 1.08996 * 109.47304 * 89.99633 * 1 2 3 32 32 H 1.08996 * 109.47245 * 209.99936 * 1 2 3 33 33 H 1.08997 * 109.46968 * 329.99568 * 1 2 3 34 34 H 1.08006 * 120.36273 * 0.02562 * 3 2 1 35 35 H 1.08993 * 109.47804 * 270.02927 * 5 4 3 36 36 H 1.09009 * 109.46908 * 30.03006 * 5 4 3 37 37 H 1.09002 * 109.47233 * 150.02437 * 5 4 3 38 38 H 0.96999 * 120.00146 * 359.97438 * 11 9 8 39 39 H 1.09000 * 109.47232 * 59.99775 * 12 11 9 40 40 H 1.08997 * 109.47041 * 299.99591 * 12 11 9 41 41 H 1.08992 * 113.61675 * 254.61398 * 15 13 12 42 42 H 1.09000 * 113.60973 * 25.51686 * 15 13 12 43 43 H 0.97001 * 119.99862 * 72.50056 * 18 16 15 44 44 H 0.97003 * 120.00138 * 180.02562 * 22 21 19 45 45 H 1.08999 * 113.61567 * 334.48261 * 27 13 12 46 46 H 1.09000 * 113.61379 * 105.30384 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2041 1.2160 0.0000 4 6 3.5608 1.2030 -0.0005 5 6 4.3378 2.4942 -0.0011 6 7 4.2100 0.0060 -0.0016 7 7 5.5649 -0.3506 0.0020 8 6 5.6151 -1.6695 -0.0039 9 6 6.8553 -2.4794 -0.0047 10 8 7.9395 -1.9305 -0.0048 11 7 6.7814 -3.8251 -0.0054 12 6 8.0081 -4.6261 -0.0067 13 6 7.6463 -6.1128 -0.0066 14 1 6.8608 -6.3572 0.7085 15 6 7.4006 -6.6870 -1.4119 16 6 8.1496 -7.9474 -0.9392 17 1 7.5029 -8.6944 -0.4790 18 7 9.0421 -8.5147 -1.9530 19 6 8.7080 -9.6840 -2.5823 20 1 7.7863 -10.1880 -2.3316 21 6 9.5534 -10.2213 -3.5433 22 7 9.2320 -11.3450 -4.1485 23 14 11.1473 -9.3493 -3.9776 24 1 12.2376 -9.8443 -3.0992 25 1 11.4912 -9.6238 -5.3959 26 1 10.9803 -7.8867 -3.7829 27 6 8.8674 -7.0438 0.0773 28 7 4.3735 -2.1593 -0.0033 29 6 3.4993 -1.1637 -0.0019 30 7 2.1597 -1.1388 -0.0005 31 1 -0.3634 0.0001 -1.0276 32 1 -0.3633 -0.8899 0.5138 33 1 -0.3633 0.8899 0.5139 34 1 1.6671 2.1531 0.0004 35 1 4.5244 2.8056 -1.0288 36 1 3.7630 3.2644 0.5133 37 1 5.2881 2.3466 0.5120 38 1 5.9161 -4.2633 -0.0050 39 1 8.5939 -4.3950 0.8830 40 1 8.5926 -4.3941 -0.8970 41 1 6.3479 -6.8608 -1.6347 42 1 7.9173 -6.1428 -2.2024 43 1 9.8698 -8.0619 -2.1785 44 1 9.8229 -11.7206 -4.8198 45 1 9.7844 -6.5971 -0.3068 46 1 8.9988 -7.5043 1.0565 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086267162.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:48 Heat of formation + Delta-G solvation = 133.907919 kcal Electronic energy + Delta-G solvation = -28297.840117 eV Core-core repulsion = 24226.289817 eV Total energy + Delta-G solvation = -4071.550300 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.45323 -40.23635 -39.28083 -38.44498 -36.01194 -34.91362 -33.37826 -32.97012 -31.95817 -30.74540 -29.70381 -28.63632 -27.97114 -25.27569 -25.12112 -23.68139 -23.35864 -22.23582 -20.98484 -20.68164 -19.41309 -18.94868 -18.60464 -17.49256 -17.37179 -17.33181 -16.11451 -15.62773 -15.57841 -15.04154 -14.84138 -14.64157 -14.44898 -14.26482 -14.21362 -13.83303 -13.73759 -13.31603 -13.27240 -13.18958 -12.87242 -12.64844 -12.42194 -12.22310 -12.05573 -11.94288 -11.60544 -11.57913 -10.89151 -10.81537 -10.69184 -10.55746 -10.44545 -10.16436 -10.15098 -10.09016 -9.80421 -9.53021 -9.29950 -9.19231 -8.87106 -7.24195 -5.75937 -3.11229 -0.23990 0.05588 1.17450 1.36414 2.44164 2.62398 2.77642 3.07222 3.36926 3.39840 3.42958 3.47462 3.59082 3.91035 4.18255 4.40458 4.49511 4.54430 4.60581 4.68287 4.85701 4.86225 4.89099 4.90399 4.97406 5.12860 5.22929 5.37551 5.41055 5.45282 5.48052 5.50461 5.62904 5.68317 5.71734 5.82064 5.84032 6.11208 6.20986 6.25093 6.33601 6.55574 6.70773 6.84868 7.01362 7.09514 7.39474 7.86264 8.00924 8.43929 9.21937 9.94676 10.14535 11.42296 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.018858 B = 0.001806 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.444564 B =15495.945953 C =16149.072304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.237 3.763 3 C -0.223 4.223 4 C 0.206 3.794 5 C -0.124 4.124 6 N -0.331 5.331 7 N -0.269 5.269 8 C 0.243 3.757 9 C 0.608 3.392 10 O -0.510 6.510 11 N -0.694 5.694 12 C 0.131 3.869 13 C -0.128 4.128 14 H 0.094 0.906 15 C -0.162 4.162 16 C 0.172 3.828 17 H 0.085 0.915 18 N -0.737 5.737 19 C -0.247 4.247 20 H 0.091 0.909 21 C 0.004 3.996 22 N -0.933 5.933 23 Si 0.884 3.116 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.277 1.277 27 C -0.144 4.144 28 N -0.500 5.500 29 C 0.454 3.546 30 N -0.458 5.458 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.176 0.824 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.415 0.585 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.061 0.939 42 H 0.077 0.923 43 H 0.362 0.638 44 H 0.259 0.741 45 H 0.079 0.921 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.982 32.362 12.361 39.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.072 3.928 3 C -0.248 4.248 4 C 0.089 3.911 5 C -0.181 4.181 6 N -0.113 5.113 7 N -0.103 5.103 8 C -0.041 4.041 9 C 0.387 3.613 10 O -0.382 6.382 11 N -0.346 5.346 12 C 0.009 3.991 13 C -0.147 4.147 14 H 0.113 0.887 15 C -0.203 4.203 16 C 0.061 3.939 17 H 0.103 0.897 18 N -0.376 5.376 19 C -0.377 4.377 20 H 0.109 0.891 21 C -0.192 4.192 22 N -0.581 5.581 23 Si 0.714 3.286 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.203 1.203 27 C -0.184 4.184 28 N -0.235 5.235 29 C 0.093 3.907 30 N -0.175 5.175 31 H 0.115 0.885 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.193 0.807 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.111 0.889 38 H 0.251 0.749 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.079 0.921 42 H 0.096 0.904 43 H 0.195 0.805 44 H 0.069 0.931 45 H 0.097 0.903 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -17.802 31.534 12.262 38.232 hybrid contribution 0.841 1.236 -0.505 1.578 sum -16.961 32.770 11.756 38.727 Atomic orbital electron populations 1.20920 0.85901 1.05137 1.04743 1.22117 0.98263 0.86722 0.85713 1.21685 0.91301 1.01579 1.10263 1.20937 0.92081 0.86489 0.91577 1.21107 1.01201 0.90584 1.05226 1.49023 1.07424 1.08062 1.46760 1.78875 0.89032 1.13245 1.29135 1.24241 0.93144 0.89655 0.97056 1.16308 0.84459 0.82226 0.78305 1.90862 1.26777 1.71604 1.48930 1.45796 1.11886 1.04444 1.72521 1.21614 0.85197 0.89613 1.02683 1.22665 1.00236 0.91585 1.00204 0.88732 1.23974 1.01409 1.00381 0.94548 1.21558 0.91838 0.91627 0.88926 0.89690 1.42760 1.22924 1.26980 1.44982 1.19147 1.05686 0.97498 1.15366 0.89108 1.24698 0.98485 0.97089 0.98919 1.69704 1.38256 1.20448 1.29669 0.86552 0.84902 0.79371 0.77734 1.21039 1.21749 1.20278 1.23462 0.96794 0.97359 1.00746 1.70847 0.97545 1.26891 1.28202 1.22633 0.90156 0.81583 0.96319 1.67911 1.01509 1.28931 1.19130 0.88467 0.88955 0.89046 0.80675 0.88287 0.88184 0.88922 0.74908 0.90983 0.90651 0.92061 0.90419 0.80460 0.93065 0.90274 0.91483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.18 10.19 36.00 0.37 0.19 16 2 C 0.24 1.34 6.83 -82.11 -0.56 0.78 16 3 C -0.22 -0.83 9.39 -39.77 -0.37 -1.20 16 4 C 0.21 1.34 6.86 -81.58 -0.56 0.78 16 5 C -0.12 -0.42 10.13 36.00 0.36 -0.05 16 6 N -0.33 -3.73 3.91 -10.07 -0.04 -3.77 16 7 N -0.27 -3.77 12.67 32.02 0.41 -3.36 16 8 C 0.24 3.55 7.92 -156.79 -1.24 2.31 16 9 C 0.61 9.09 7.84 -12.21 -0.10 9.00 16 10 O -0.51 -8.94 17.07 5.34 0.09 -8.85 16 11 N -0.69 -8.96 5.55 -61.16 -0.34 -9.30 16 12 C 0.13 1.69 5.50 -4.04 -0.02 1.67 16 13 C -0.13 -1.66 3.75 -89.80 -0.34 -2.00 16 14 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 15 C -0.16 -2.63 7.45 -25.77 -0.19 -2.82 16 16 C 0.17 3.22 4.49 -66.98 -0.30 2.91 16 17 H 0.09 1.61 8.10 -51.93 -0.42 1.19 16 18 N -0.74 -17.44 5.21 -52.50 -0.27 -17.72 16 19 C -0.25 -7.00 10.45 -15.06 -0.16 -7.16 16 20 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 21 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 22 N -0.93 -29.55 13.97 55.49 0.78 -28.78 16 23 Si 0.88 22.41 27.74 -169.99 -4.71 17.69 16 24 H -0.28 -7.13 7.11 56.52 0.40 -6.72 16 25 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 26 H -0.28 -6.63 6.52 56.52 0.37 -6.26 16 27 C -0.14 -2.14 7.39 -25.92 -0.19 -2.33 16 28 N -0.50 -7.16 10.89 -12.24 -0.13 -7.30 16 29 C 0.45 5.78 8.99 -323.05 -2.90 2.88 16 30 N -0.46 -4.75 10.40 -10.02 -0.10 -4.86 16 31 H 0.10 0.07 8.14 -51.93 -0.42 -0.36 16 32 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.09 -0.10 8.09 -51.93 -0.42 -0.52 16 34 H 0.18 -0.15 8.06 -52.48 -0.42 -0.57 16 35 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.10 0.01 8.09 -51.92 -0.42 -0.41 16 37 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.41 4.88 8.14 -40.82 -0.33 4.55 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.08 1.06 7.88 -51.93 -0.41 0.65 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.08 1.35 7.92 -51.93 -0.41 0.94 16 43 H 0.36 8.46 5.78 -40.82 -0.24 8.23 16 44 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 45 H 0.08 1.19 8.08 -51.93 -0.42 0.77 16 46 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 392.43 15.07 5.91 5.91 Total: -1.00 -38.10 392.43 -11.18 -49.28 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -6.46 Total: 6.06 kcal Atomic # 6 Polarization: 11.27 SS G_CDS: -6.30 Total: 4.98 kcal Atomic # 7 Polarization: -75.37 SS G_CDS: 0.29 Total: -75.07 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.09 Total: -8.85 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.71 Total: 17.69 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -38.10 -11.18 -49.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086267162.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.191 kcal (2) G-P(sol) polarization free energy of solvation -38.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds