Wall clock time and date at job start Wed Apr 1 2020 03:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.40166 * 119.82559 * 2 1 4 4 C 1.35678 * 119.27675 * 180.02562 * 3 2 1 5 5 C 1.50696 * 120.49041 * 179.97438 * 4 3 2 6 6 N 1.36169 * 119.02371 * 0.02562 * 4 3 2 7 7 N 1.40107 * 133.22056 * 180.24546 * 6 4 3 8 8 C 1.31990 * 106.92470 * 180.11618 * 7 6 4 9 9 C 1.48118 * 125.32406 * 179.91461 * 8 7 6 10 10 O 1.21525 * 120.00380 * 359.71400 * 9 8 7 11 11 N 1.34775 * 120.00148 * 179.72111 * 9 8 7 12 12 C 1.46504 * 120.00207 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.46983 * 179.97438 * 12 11 9 14 14 H 1.09002 * 112.85017 * 314.66585 * 13 12 11 15 15 C 1.53786 * 113.61503 * 85.86203 * 13 12 11 16 16 C 1.54049 * 86.98426 * 140.01654 * 15 13 12 17 17 H 1.08996 * 113.68970 * 89.12734 * 16 15 13 18 18 N 1.46497 * 113.61947 * 220.02008 * 16 15 13 19 19 C 1.36932 * 120.00371 * 252.49569 * 18 16 15 20 20 H 1.08002 * 120.00286 * 0.02562 * 19 18 16 21 21 C 1.38815 * 120.00368 * 179.97438 * 19 18 16 22 22 N 1.31617 * 119.99994 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 119.99711 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47029 * 89.99957 * 23 21 19 25 25 H 1.48499 * 109.46895 * 209.99791 * 23 21 19 26 26 H 1.48493 * 109.47198 * 329.99723 * 23 21 19 27 27 C 1.53781 * 113.61337 * 183.46996 * 13 12 11 28 28 N 1.33472 * 109.34913 * 359.64678 * 8 7 6 29 29 C 1.32500 * 109.75753 * 0.23097 * 28 8 7 30 30 N 1.31263 * 119.81932 * 180.02562 * 2 1 3 31 31 H 1.08996 * 109.47304 * 89.99633 * 1 2 3 32 32 H 1.08996 * 109.47245 * 209.99936 * 1 2 3 33 33 H 1.08997 * 109.46968 * 329.99568 * 1 2 3 34 34 H 1.08006 * 120.36273 * 0.02562 * 3 2 1 35 35 H 1.08993 * 109.47804 * 270.02927 * 5 4 3 36 36 H 1.09009 * 109.46908 * 30.03006 * 5 4 3 37 37 H 1.09002 * 109.47233 * 150.02437 * 5 4 3 38 38 H 0.96999 * 120.00146 * 359.97438 * 11 9 8 39 39 H 1.09000 * 109.47232 * 59.99775 * 12 11 9 40 40 H 1.08997 * 109.47041 * 299.99591 * 12 11 9 41 41 H 1.08992 * 113.61675 * 254.61398 * 15 13 12 42 42 H 1.09000 * 113.60973 * 25.51686 * 15 13 12 43 43 H 0.97001 * 119.99862 * 72.50056 * 18 16 15 44 44 H 0.97003 * 120.00138 * 180.02562 * 22 21 19 45 45 H 1.08999 * 113.61567 * 334.48261 * 27 13 12 46 46 H 1.09000 * 113.61379 * 105.30384 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2041 1.2160 0.0000 4 6 3.5608 1.2030 -0.0005 5 6 4.3378 2.4942 -0.0011 6 7 4.2100 0.0060 -0.0016 7 7 5.5649 -0.3506 0.0020 8 6 5.6151 -1.6695 -0.0039 9 6 6.8553 -2.4794 -0.0047 10 8 7.9395 -1.9305 -0.0048 11 7 6.7814 -3.8251 -0.0054 12 6 8.0081 -4.6261 -0.0067 13 6 7.6463 -6.1128 -0.0066 14 1 6.8608 -6.3572 0.7085 15 6 7.4006 -6.6870 -1.4119 16 6 8.1496 -7.9474 -0.9392 17 1 7.5029 -8.6944 -0.4790 18 7 9.0421 -8.5147 -1.9530 19 6 8.7080 -9.6840 -2.5823 20 1 7.7863 -10.1880 -2.3316 21 6 9.5534 -10.2213 -3.5433 22 7 9.2320 -11.3450 -4.1485 23 14 11.1473 -9.3493 -3.9776 24 1 12.2376 -9.8443 -3.0992 25 1 11.4912 -9.6238 -5.3959 26 1 10.9803 -7.8867 -3.7829 27 6 8.8674 -7.0438 0.0773 28 7 4.3735 -2.1593 -0.0033 29 6 3.4993 -1.1637 -0.0019 30 7 2.1597 -1.1388 -0.0005 31 1 -0.3634 0.0001 -1.0276 32 1 -0.3633 -0.8899 0.5138 33 1 -0.3633 0.8899 0.5139 34 1 1.6671 2.1531 0.0004 35 1 4.5244 2.8056 -1.0288 36 1 3.7630 3.2644 0.5133 37 1 5.2881 2.3466 0.5120 38 1 5.9161 -4.2633 -0.0050 39 1 8.5939 -4.3950 0.8830 40 1 8.5926 -4.3941 -0.8970 41 1 6.3479 -6.8608 -1.6347 42 1 7.9173 -6.1428 -2.2024 43 1 9.8698 -8.0619 -2.1785 44 1 9.8229 -11.7206 -4.8198 45 1 9.7844 -6.5971 -0.3068 46 1 8.9988 -7.5043 1.0565 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086267162.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:47 Heat of formation + Delta-G solvation = 107.453360 kcal Electronic energy + Delta-G solvation = -28298.987273 eV Core-core repulsion = 24226.289817 eV Total energy + Delta-G solvation = -4072.697455 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.21372 -41.22911 -40.20561 -39.65181 -36.59831 -36.26897 -35.14736 -33.60757 -32.83705 -32.58840 -30.31324 -29.41025 -28.68740 -26.47984 -26.38179 -25.20455 -24.20377 -22.87142 -22.40433 -21.74709 -20.80054 -19.73485 -19.34205 -19.33039 -18.39039 -18.12294 -17.28107 -16.72805 -16.60330 -16.12195 -16.01798 -15.85559 -15.27981 -15.07075 -14.97529 -14.72168 -14.64018 -14.40122 -14.22497 -13.98233 -13.87209 -13.45258 -13.24825 -13.22412 -13.08010 -13.06303 -12.90362 -12.74003 -12.67079 -12.15832 -11.99583 -11.84446 -11.70851 -11.66225 -11.44516 -11.15588 -11.12151 -10.87039 -10.82865 -10.29380 -9.99856 -9.26250 -8.02504 -5.34767 -0.82115 -0.61311 0.48173 0.49164 1.37610 1.40377 1.47439 1.54891 1.82563 2.03865 2.19545 2.48097 2.79148 3.08468 3.14914 3.27786 3.57019 3.66887 3.71080 3.83077 3.97751 4.07301 4.15644 4.25867 4.26195 4.35785 4.43172 4.50241 4.52265 4.60842 4.70154 4.78891 4.80434 4.86384 4.92307 4.96256 5.02022 5.05754 5.09639 5.18183 5.25192 5.32238 5.36601 5.63633 5.78696 6.03578 6.23418 6.25257 6.52372 6.78903 7.08421 7.86668 8.04788 9.19077 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.018858 B = 0.001806 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.444564 B =15495.945953 C =16149.072304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.238 3.762 3 C -0.190 4.190 4 C 0.176 3.824 5 C -0.120 4.120 6 N -0.334 5.334 7 N -0.295 5.295 8 C 0.226 3.774 9 C 0.609 3.391 10 O -0.543 6.543 11 N -0.683 5.683 12 C 0.135 3.865 13 C -0.100 4.100 14 H 0.118 0.882 15 C -0.159 4.159 16 C 0.146 3.854 17 H 0.078 0.922 18 N -0.743 5.743 19 C -0.231 4.231 20 H 0.059 0.941 21 C -0.067 4.067 22 N -0.984 5.984 23 Si 0.955 3.045 24 H -0.277 1.277 25 H -0.298 1.298 26 H -0.254 1.254 27 C -0.130 4.130 28 N -0.529 5.529 29 C 0.436 3.564 30 N -0.495 5.495 31 H 0.113 0.887 32 H 0.082 0.918 33 H 0.131 0.869 34 H 0.235 0.765 35 H 0.107 0.893 36 H 0.142 0.858 37 H 0.068 0.932 38 H 0.420 0.580 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.061 0.939 42 H 0.066 0.934 43 H 0.366 0.634 44 H 0.257 0.743 45 H 0.082 0.918 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.784 36.437 13.654 44.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.076 3.924 3 C -0.213 4.213 4 C 0.061 3.939 5 C -0.176 4.176 6 N -0.116 5.116 7 N -0.130 5.130 8 C -0.058 4.058 9 C 0.390 3.610 10 O -0.418 6.418 11 N -0.335 5.335 12 C 0.013 3.987 13 C -0.120 4.120 14 H 0.136 0.864 15 C -0.200 4.200 16 C 0.037 3.963 17 H 0.096 0.904 18 N -0.384 5.384 19 C -0.363 4.363 20 H 0.077 0.923 21 C -0.259 4.259 22 N -0.635 5.635 23 Si 0.782 3.218 24 H -0.203 1.203 25 H -0.225 1.225 26 H -0.179 1.179 27 C -0.169 4.169 28 N -0.265 5.265 29 C 0.075 3.925 30 N -0.215 5.215 31 H 0.131 0.869 32 H 0.101 0.899 33 H 0.149 0.851 34 H 0.251 0.749 35 H 0.125 0.875 36 H 0.160 0.840 37 H 0.087 0.913 38 H 0.258 0.742 39 H 0.102 0.898 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.199 0.801 44 H 0.066 0.934 45 H 0.100 0.900 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -19.683 35.688 13.607 42.968 hybrid contribution 1.048 0.104 -0.852 1.355 sum -18.635 35.793 12.756 42.321 Atomic orbital electron populations 1.21163 0.82662 1.06651 1.06036 1.23064 1.00150 0.86349 0.82817 1.22403 0.90001 1.03047 1.05871 1.21894 0.93475 0.86110 0.92460 1.21236 1.00428 0.89970 1.05981 1.49092 1.06260 1.09376 1.46824 1.78689 0.91229 1.13090 1.30006 1.24024 0.93159 0.89972 0.98623 1.16408 0.84315 0.82613 0.77698 1.90824 1.27952 1.72283 1.50788 1.45721 1.12238 1.03930 1.71570 1.21562 0.85147 0.89196 1.02822 1.22499 0.99897 0.91305 0.98253 0.86399 1.23828 1.00857 0.98964 0.96302 1.21967 0.92465 0.92465 0.89365 0.90354 1.42777 1.23918 1.25795 1.45910 1.19138 1.04050 0.98390 1.14677 0.92348 1.25521 1.02596 0.98197 0.99544 1.69886 1.39954 1.22661 1.31006 0.85411 0.80218 0.79313 0.76848 1.20264 1.22457 1.17907 1.23331 0.97154 0.96238 1.00204 1.70697 0.97690 1.28399 1.29745 1.22829 0.91017 0.81866 0.96748 1.68035 1.00313 1.31509 1.21632 0.86906 0.89900 0.85062 0.74866 0.87466 0.83967 0.91314 0.74197 0.89799 0.91642 0.92009 0.91522 0.80108 0.93432 0.89970 0.89543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.08 10.19 71.23 0.73 0.81 16 2 C 0.24 2.01 6.83 43.11 0.29 2.30 16 3 C -0.19 -0.60 9.39 22.14 0.21 -0.39 16 4 C 0.18 1.91 6.86 41.29 0.28 2.19 16 5 C -0.12 -0.50 10.13 71.23 0.72 0.22 16 6 N -0.33 -7.53 3.91 -185.77 -0.73 -8.26 16 7 N -0.29 -8.63 12.67 -52.61 -0.67 -9.30 16 8 C 0.23 6.94 7.92 137.39 1.09 8.03 16 9 C 0.61 18.82 7.84 86.87 0.68 19.50 16 10 O -0.54 -19.66 17.07 -3.80 -0.06 -19.73 16 11 N -0.68 -17.55 5.55 -465.69 -2.59 -20.13 16 12 C 0.14 3.32 5.50 86.38 0.47 3.79 16 13 C -0.10 -2.43 3.75 -10.26 -0.04 -2.47 16 14 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 15 C -0.16 -5.05 7.45 31.21 0.23 -4.81 16 16 C 0.15 5.38 4.49 45.61 0.20 5.59 16 17 H 0.08 2.97 8.10 -2.39 -0.02 2.95 16 18 N -0.74 -35.00 5.21 -320.02 -1.67 -36.66 16 19 C -0.23 -13.41 10.45 84.03 0.88 -12.53 16 20 H 0.06 3.69 8.06 -2.91 -0.02 3.66 16 21 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 22 N -0.98 -64.36 13.97 21.65 0.30 -64.06 16 23 Si 0.95 46.77 27.74 68.60 1.90 48.67 16 24 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 25 H -0.30 -14.81 7.11 99.48 0.71 -14.11 16 26 H -0.25 -11.37 6.52 99.48 0.65 -10.72 16 27 C -0.13 -3.58 7.39 31.12 0.23 -3.35 16 28 N -0.53 -15.84 10.89 -192.63 -2.10 -17.94 16 29 C 0.44 11.30 8.99 261.57 2.35 13.65 16 30 N -0.50 -9.97 10.40 -185.60 -1.93 -11.90 16 31 H 0.11 -0.32 8.14 -2.39 -0.02 -0.34 16 32 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16 33 H 0.13 -1.09 8.09 -2.39 -0.02 -1.11 16 34 H 0.23 -2.12 8.06 -2.91 -0.02 -2.14 16 35 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 36 H 0.14 -0.66 8.09 -2.38 -0.02 -0.68 16 37 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.42 9.85 8.14 -92.71 -0.76 9.10 16 39 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.07 1.78 7.88 -2.39 -0.02 1.76 16 41 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.07 2.29 7.92 -2.39 -0.02 2.27 16 43 H 0.37 16.61 5.78 -92.71 -0.54 16.07 16 44 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 45 H 0.08 2.27 8.08 -2.39 -0.02 2.25 16 46 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -90.17 392.43 0.95 -89.22 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: -0.32 Total: 21.15 kcal Atomic # 6 Polarization: 20.14 SS G_CDS: 8.80 Total: 28.95 kcal Atomic # 7 Polarization: -158.88 SS G_CDS: -9.37 Total: -168.25 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.06 Total: -19.73 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 1.90 Total: 48.67 kcal Total: -90.17 0.95 -89.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086267162.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.675 kcal (2) G-P(sol) polarization free energy of solvation -90.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds