Wall clock time and date at job start Wed Apr 1 2020 03:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40163 * 119.82031 * 2 1 4 4 C 1.35690 * 119.27058 * 179.97438 * 3 2 1 5 5 C 1.50701 * 120.48531 * 179.97438 * 4 3 2 6 6 N 1.36166 * 119.02650 * 0.02562 * 4 3 2 7 7 N 1.40105 * 133.22184 * 180.25339 * 6 4 3 8 8 C 1.31981 * 106.92165 * 180.11958 * 7 6 4 9 9 C 1.48137 * 125.32121 * 179.90648 * 8 7 6 10 10 O 1.21522 * 120.00016 * 359.72295 * 9 8 7 11 11 N 1.34771 * 120.00107 * 179.71502 * 9 8 7 12 12 C 1.46502 * 120.00428 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47348 * 180.02562 * 12 11 9 14 14 H 1.09000 * 112.84976 * 316.19644 * 13 12 11 15 15 C 1.53774 * 113.69022 * 87.46672 * 13 12 11 16 16 C 1.53789 * 87.08153 * 139.99200 * 15 13 12 17 17 H 1.09001 * 113.68705 * 220.00908 * 16 15 13 18 18 N 1.46494 * 113.61148 * 89.11305 * 16 15 13 19 19 C 1.36945 * 119.99612 * 107.50836 * 18 16 15 20 20 H 1.07999 * 120.00077 * 359.97438 * 19 18 16 21 21 C 1.38812 * 119.99637 * 179.97438 * 19 18 16 22 22 N 1.31624 * 119.99539 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 120.00216 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46712 * 90.00052 * 23 21 19 25 25 H 1.48499 * 109.46916 * 209.99467 * 23 21 19 26 26 H 1.48492 * 109.46909 * 330.00070 * 23 21 19 27 27 C 1.53782 * 113.61247 * 185.00414 * 13 12 11 28 28 N 1.33467 * 109.35872 * 359.64283 * 8 7 6 29 29 C 1.32504 * 109.75005 * 0.23232 * 28 8 7 30 30 N 1.31264 * 119.82042 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.47521 * 89.99762 * 1 2 3 32 32 H 1.08999 * 109.46922 * 209.99442 * 1 2 3 33 33 H 1.08995 * 109.47018 * 329.99457 * 1 2 3 34 34 H 1.08001 * 120.36687 * 359.95868 * 3 2 1 35 35 H 1.09002 * 109.46883 * 270.02225 * 5 4 3 36 36 H 1.09004 * 109.47177 * 30.02319 * 5 4 3 37 37 H 1.08998 * 109.46813 * 150.02153 * 5 4 3 38 38 H 0.97002 * 119.99981 * 0.02562 * 11 9 8 39 39 H 1.09002 * 109.46761 * 60.00162 * 12 11 9 40 40 H 1.08997 * 109.46723 * 300.00808 * 12 11 9 41 41 H 1.08997 * 113.61895 * 25.44316 * 15 13 12 42 42 H 1.09000 * 113.61216 * 254.53718 * 15 13 12 43 43 H 0.96995 * 120.00290 * 287.77727 * 18 16 15 44 44 H 0.97005 * 119.99727 * 180.02562 * 22 21 19 45 45 H 1.08993 * 113.61721 * 105.38332 * 27 13 12 46 46 H 1.09007 * 113.68952 * 334.49358 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2040 1.2160 0.0000 4 6 3.5608 1.2030 0.0005 5 6 4.3378 2.4943 0.0000 6 7 4.2101 0.0061 0.0005 7 7 5.5650 -0.3505 0.0055 8 6 5.6151 -1.6693 0.0000 9 6 6.8555 -2.4793 0.0005 10 8 7.9396 -1.9303 0.0012 11 7 6.7816 -3.8250 0.0003 12 6 8.0082 -4.6260 0.0013 13 6 7.6465 -6.1126 0.0002 14 1 6.8412 -6.3529 0.6944 15 6 7.4416 -6.6976 -1.4071 16 6 8.1756 -7.9529 -0.9067 17 1 8.8608 -8.3805 -1.6387 18 7 7.2877 -8.9518 -0.3069 19 6 7.0145 -10.1149 -0.9762 20 1 7.4533 -10.2955 -1.9463 21 6 6.1736 -11.0617 -0.4076 22 7 5.9114 -12.1798 -1.0507 23 14 5.4152 -10.7496 1.2708 24 1 4.1129 -10.0558 1.1042 25 1 5.2009 -12.0444 1.9656 26 1 6.3289 -9.9006 2.0766 27 6 8.8646 -7.0430 0.1240 28 7 4.3736 -2.1593 -0.0003 29 6 3.4993 -1.1636 0.0000 30 7 2.1597 -1.1388 0.0005 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5137 33 1 -0.3633 0.8899 0.5139 34 1 1.6670 2.1531 -0.0007 35 1 4.5251 2.8051 -1.0279 36 1 3.7625 3.2647 0.5134 37 1 5.2876 2.3470 0.5139 38 1 5.9162 -4.2632 -0.0006 39 1 8.5925 -4.3945 0.8919 40 1 8.5941 -4.3942 -0.8881 41 1 7.9799 -6.1587 -2.1867 42 1 6.3958 -6.8745 -1.6584 43 1 6.8902 -8.7878 0.5626 44 1 5.3235 -12.8413 -0.6535 45 1 8.9677 -7.4987 1.1088 46 1 9.7929 -6.5996 -0.2364 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086547070.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:52 Heat of formation + Delta-G solvation = 135.539882 kcal Electronic energy + Delta-G solvation = -28540.820078 eV Core-core repulsion = 24469.340545 eV Total energy + Delta-G solvation = -4071.479533 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.42295 -40.21520 -39.27951 -38.50437 -35.98191 -34.89584 -33.28397 -32.93274 -31.92949 -30.67080 -29.67305 -28.61090 -27.96640 -25.26602 -25.09501 -23.59923 -23.24790 -22.23615 -21.68677 -20.64329 -19.12763 -18.66733 -18.44922 -17.64696 -17.36955 -17.30718 -16.06090 -15.59672 -15.55517 -14.98682 -14.81621 -14.53215 -14.39532 -14.27190 -14.16700 -13.80424 -13.56277 -13.51875 -13.24340 -13.16195 -12.84876 -12.80119 -12.52345 -12.36488 -12.04685 -12.00469 -11.55902 -11.35225 -10.90138 -10.77954 -10.66170 -10.51921 -10.49045 -10.20050 -10.13386 -9.97960 -9.65046 -9.52868 -9.26829 -9.16997 -8.88935 -7.27854 -5.77413 -3.13470 -0.20863 0.08442 1.20285 1.39037 2.47639 2.65355 2.80890 3.09769 3.38491 3.39590 3.41368 3.46417 3.62060 3.94237 4.21148 4.43292 4.52443 4.56526 4.58907 4.69657 4.89853 4.90279 4.93442 4.94065 4.99874 5.08675 5.25185 5.40450 5.41162 5.44223 5.50943 5.52247 5.53925 5.69103 5.74833 5.83958 5.90426 6.14148 6.19081 6.26879 6.49974 6.66968 6.74460 6.88411 6.92226 7.12905 7.42524 7.88075 8.00591 8.42331 9.20235 9.92572 10.11692 11.40665 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.013082 B = 0.002178 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.808185 B =12850.396295 C =14556.659124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.237 3.763 3 C -0.223 4.223 4 C 0.206 3.794 5 C -0.124 4.124 6 N -0.331 5.331 7 N -0.270 5.270 8 C 0.242 3.758 9 C 0.608 3.392 10 O -0.512 6.512 11 N -0.694 5.694 12 C 0.131 3.869 13 C -0.125 4.125 14 H 0.092 0.908 15 C -0.167 4.167 16 C 0.173 3.827 17 H 0.072 0.928 18 N -0.730 5.730 19 C -0.246 4.246 20 H 0.092 0.908 21 C 0.005 3.995 22 N -0.932 5.932 23 Si 0.883 3.117 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.277 1.277 27 C -0.147 4.147 28 N -0.499 5.499 29 C 0.454 3.546 30 N -0.457 5.457 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.176 0.824 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.416 0.584 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.362 0.638 44 H 0.260 0.740 45 H 0.068 0.932 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.205 34.714 3.146 36.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.071 3.929 3 C -0.248 4.248 4 C 0.088 3.912 5 C -0.181 4.181 6 N -0.113 5.113 7 N -0.104 5.104 8 C -0.042 4.042 9 C 0.388 3.612 10 O -0.384 6.384 11 N -0.346 5.346 12 C 0.008 3.992 13 C -0.143 4.143 14 H 0.111 0.889 15 C -0.208 4.208 16 C 0.061 3.939 17 H 0.090 0.910 18 N -0.370 5.370 19 C -0.376 4.376 20 H 0.110 0.890 21 C -0.191 4.191 22 N -0.580 5.580 23 Si 0.713 3.287 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.203 1.203 27 C -0.187 4.187 28 N -0.234 5.234 29 C 0.093 3.907 30 N -0.174 5.174 31 H 0.115 0.885 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.193 0.807 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.111 0.889 38 H 0.252 0.748 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.195 0.805 44 H 0.070 0.930 45 H 0.087 0.913 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.949 33.899 2.991 34.947 hybrid contribution -1.019 0.804 1.201 1.768 sum -8.968 34.703 4.192 36.087 Atomic orbital electron populations 1.20922 0.85909 1.05147 1.04735 1.22121 0.98274 0.86713 0.85752 1.21686 0.91304 1.01562 1.10225 1.20935 0.92079 0.86481 0.91688 1.21101 1.01189 0.90589 1.05181 1.49027 1.07422 1.08053 1.46758 1.78857 0.89047 1.13216 1.29240 1.24242 0.93171 0.89651 0.97093 1.16310 0.84451 0.82212 0.78261 1.90849 1.26771 1.71629 1.49159 1.45837 1.12018 1.04458 1.72335 1.21655 0.85200 0.89798 1.02509 1.22782 1.00185 0.91148 1.00228 0.88934 1.23881 1.02576 0.99981 0.94388 1.21001 0.91482 0.87622 0.93797 0.91001 1.42517 1.55256 1.18570 1.20643 1.19111 1.23756 0.92717 1.01986 0.89025 1.24683 0.99928 0.96340 0.98124 1.69704 1.40767 1.08933 1.38555 0.86568 0.79598 0.77140 0.85361 1.20955 1.21691 1.20290 1.23466 0.96417 0.97426 1.01385 1.70872 0.97565 1.26873 1.28058 1.22638 0.90161 0.81558 0.96315 1.67921 1.01520 1.28927 1.18998 0.88470 0.88938 0.89059 0.80679 0.88319 0.88210 0.88941 0.74786 0.91052 0.90683 0.90847 0.91121 0.80492 0.93015 0.91339 0.89899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.26 10.19 36.00 0.37 0.11 16 2 C 0.24 1.50 6.83 -82.11 -0.56 0.94 16 3 C -0.22 -0.93 9.39 -39.77 -0.37 -1.30 16 4 C 0.21 1.41 6.86 -81.58 -0.56 0.86 16 5 C -0.12 -0.44 10.13 36.01 0.36 -0.08 16 6 N -0.33 -3.88 3.91 -10.07 -0.04 -3.92 16 7 N -0.27 -3.86 12.67 32.02 0.41 -3.45 16 8 C 0.24 3.67 7.92 -156.79 -1.24 2.42 16 9 C 0.61 9.29 7.84 -12.20 -0.10 9.20 16 10 O -0.51 -8.94 17.07 5.35 0.09 -8.85 16 11 N -0.69 -9.45 5.55 -61.16 -0.34 -9.79 16 12 C 0.13 1.71 5.52 -4.04 -0.02 1.68 16 13 C -0.12 -1.78 3.62 -89.81 -0.33 -2.11 16 14 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 15 C -0.17 -2.71 7.43 -25.92 -0.19 -2.90 16 16 C 0.17 3.24 4.56 -67.12 -0.31 2.93 16 17 H 0.07 1.38 8.10 -51.93 -0.42 0.96 16 18 N -0.73 -17.08 5.11 -52.63 -0.27 -17.35 16 19 C -0.25 -6.92 10.45 -15.06 -0.16 -7.08 16 20 H 0.09 2.76 8.06 -52.49 -0.42 2.33 16 21 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 22 N -0.93 -29.35 13.97 55.49 0.78 -28.58 16 23 Si 0.88 22.19 27.73 -169.99 -4.71 17.48 16 24 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 26 H -0.28 -6.53 6.52 56.52 0.37 -6.17 16 27 C -0.15 -2.20 7.39 -25.92 -0.19 -2.40 16 28 N -0.50 -7.58 10.89 -12.23 -0.13 -7.71 16 29 C 0.45 6.11 8.99 -323.04 -2.90 3.21 16 30 N -0.46 -5.12 10.40 -10.02 -0.10 -5.22 16 31 H 0.10 0.13 8.14 -51.93 -0.42 -0.29 16 32 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.09 -0.04 8.09 -51.93 -0.42 -0.46 16 34 H 0.18 -0.08 8.06 -52.49 -0.42 -0.50 16 35 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.10 0.03 8.09 -51.93 -0.42 -0.39 16 37 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.42 5.48 8.14 -40.82 -0.33 5.15 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.07 0.97 7.85 -51.93 -0.41 0.57 16 41 H 0.07 1.06 7.90 -51.93 -0.41 0.65 16 42 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.36 8.34 5.76 -40.82 -0.24 8.10 16 44 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 45 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 LS Contribution 392.24 15.07 5.91 5.91 Total: -1.00 -37.68 392.24 -11.17 -48.85 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -6.46 Total: 7.08 kcal Atomic # 6 Polarization: 11.84 SS G_CDS: -6.29 Total: 5.54 kcal Atomic # 7 Polarization: -76.32 SS G_CDS: 0.30 Total: -76.02 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.09 Total: -8.85 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.71 Total: 17.48 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -37.68 -11.17 -48.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086547070.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.395 kcal (2) G-P(sol) polarization free energy of solvation -37.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds