Wall clock time and date at job start Wed Apr 1 2020 03:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40163 * 119.82031 * 2 1 4 4 C 1.35690 * 119.27058 * 179.97438 * 3 2 1 5 5 C 1.50701 * 120.48531 * 179.97438 * 4 3 2 6 6 N 1.36166 * 119.02650 * 0.02562 * 4 3 2 7 7 N 1.40105 * 133.22184 * 180.25339 * 6 4 3 8 8 C 1.31981 * 106.92165 * 180.11958 * 7 6 4 9 9 C 1.48137 * 125.32121 * 179.90648 * 8 7 6 10 10 O 1.21522 * 120.00016 * 359.72295 * 9 8 7 11 11 N 1.34771 * 120.00107 * 179.71502 * 9 8 7 12 12 C 1.46502 * 120.00428 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47348 * 180.02562 * 12 11 9 14 14 H 1.09000 * 112.84976 * 316.19644 * 13 12 11 15 15 C 1.53774 * 113.69022 * 87.46672 * 13 12 11 16 16 C 1.53789 * 87.08153 * 139.99200 * 15 13 12 17 17 H 1.09001 * 113.68705 * 220.00908 * 16 15 13 18 18 N 1.46494 * 113.61148 * 89.11305 * 16 15 13 19 19 C 1.36945 * 119.99612 * 107.50836 * 18 16 15 20 20 H 1.07999 * 120.00077 * 359.97438 * 19 18 16 21 21 C 1.38812 * 119.99637 * 179.97438 * 19 18 16 22 22 N 1.31624 * 119.99539 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 120.00216 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46712 * 90.00052 * 23 21 19 25 25 H 1.48499 * 109.46916 * 209.99467 * 23 21 19 26 26 H 1.48492 * 109.46909 * 330.00070 * 23 21 19 27 27 C 1.53782 * 113.61247 * 185.00414 * 13 12 11 28 28 N 1.33467 * 109.35872 * 359.64283 * 8 7 6 29 29 C 1.32504 * 109.75005 * 0.23232 * 28 8 7 30 30 N 1.31264 * 119.82042 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.47521 * 89.99762 * 1 2 3 32 32 H 1.08999 * 109.46922 * 209.99442 * 1 2 3 33 33 H 1.08995 * 109.47018 * 329.99457 * 1 2 3 34 34 H 1.08001 * 120.36687 * 359.95868 * 3 2 1 35 35 H 1.09002 * 109.46883 * 270.02225 * 5 4 3 36 36 H 1.09004 * 109.47177 * 30.02319 * 5 4 3 37 37 H 1.08998 * 109.46813 * 150.02153 * 5 4 3 38 38 H 0.97002 * 119.99981 * 0.02562 * 11 9 8 39 39 H 1.09002 * 109.46761 * 60.00162 * 12 11 9 40 40 H 1.08997 * 109.46723 * 300.00808 * 12 11 9 41 41 H 1.08997 * 113.61895 * 25.44316 * 15 13 12 42 42 H 1.09000 * 113.61216 * 254.53718 * 15 13 12 43 43 H 0.96995 * 120.00290 * 287.77727 * 18 16 15 44 44 H 0.97005 * 119.99727 * 180.02562 * 22 21 19 45 45 H 1.08993 * 113.61721 * 105.38332 * 27 13 12 46 46 H 1.09007 * 113.68952 * 334.49358 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2040 1.2160 0.0000 4 6 3.5608 1.2030 0.0005 5 6 4.3378 2.4943 0.0000 6 7 4.2101 0.0061 0.0005 7 7 5.5650 -0.3505 0.0055 8 6 5.6151 -1.6693 0.0000 9 6 6.8555 -2.4793 0.0005 10 8 7.9396 -1.9303 0.0012 11 7 6.7816 -3.8250 0.0003 12 6 8.0082 -4.6260 0.0013 13 6 7.6465 -6.1126 0.0002 14 1 6.8412 -6.3529 0.6944 15 6 7.4416 -6.6976 -1.4071 16 6 8.1756 -7.9529 -0.9067 17 1 8.8608 -8.3805 -1.6387 18 7 7.2877 -8.9518 -0.3069 19 6 7.0145 -10.1149 -0.9762 20 1 7.4533 -10.2955 -1.9463 21 6 6.1736 -11.0617 -0.4076 22 7 5.9114 -12.1798 -1.0507 23 14 5.4152 -10.7496 1.2708 24 1 4.1129 -10.0558 1.1042 25 1 5.2009 -12.0444 1.9656 26 1 6.3289 -9.9006 2.0766 27 6 8.8646 -7.0430 0.1240 28 7 4.3736 -2.1593 -0.0003 29 6 3.4993 -1.1636 0.0000 30 7 2.1597 -1.1388 0.0005 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5137 33 1 -0.3633 0.8899 0.5139 34 1 1.6670 2.1531 -0.0007 35 1 4.5251 2.8051 -1.0279 36 1 3.7625 3.2647 0.5134 37 1 5.2876 2.3470 0.5139 38 1 5.9162 -4.2632 -0.0006 39 1 8.5925 -4.3945 0.8919 40 1 8.5941 -4.3942 -0.8881 41 1 7.9799 -6.1587 -2.1867 42 1 6.3958 -6.8745 -1.6584 43 1 6.8902 -8.7878 0.5626 44 1 5.3235 -12.8413 -0.6535 45 1 8.9677 -7.4987 1.1088 46 1 9.7929 -6.5996 -0.2364 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086547070.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:51 Heat of formation + Delta-G solvation = 109.497997 kcal Electronic energy + Delta-G solvation = -28541.949339 eV Core-core repulsion = 24469.340545 eV Total energy + Delta-G solvation = -4072.608793 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.22229 -41.23884 -40.27017 -39.70068 -36.60586 -36.23494 -35.08416 -33.61593 -32.78964 -32.54968 -30.32346 -29.42309 -28.69913 -26.47266 -26.32494 -25.14293 -24.22971 -23.17090 -22.77070 -21.69816 -20.27922 -19.69322 -19.52178 -19.33713 -18.38595 -18.13166 -17.22050 -16.69318 -16.60599 -16.11047 -16.06663 -15.60272 -15.27860 -15.17558 -14.96104 -14.76740 -14.65095 -14.57228 -14.23514 -14.12744 -13.87846 -13.45858 -13.37354 -13.13521 -13.07895 -13.02776 -12.91355 -12.72622 -12.66031 -12.25553 -11.95960 -11.85551 -11.71505 -11.61256 -11.40554 -11.15612 -10.98055 -10.87192 -10.83176 -10.28585 -10.00813 -9.29369 -8.02930 -5.36084 -0.82747 -0.62422 0.47714 0.48643 1.37384 1.40814 1.47502 1.55403 1.82028 2.03734 2.18717 2.47713 2.78283 3.07725 3.14229 3.27663 3.51528 3.66405 3.71755 3.80633 3.95958 3.97694 4.15062 4.25177 4.26774 4.36067 4.42871 4.50485 4.59444 4.67176 4.70162 4.77181 4.79789 4.84786 4.93714 4.96487 5.01609 5.05796 5.12324 5.17696 5.30313 5.31732 5.39457 5.54324 5.80795 6.02771 6.22805 6.24057 6.51344 6.77261 7.07865 7.85236 8.03202 9.18561 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.013082 B = 0.002178 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.808185 B =12850.396295 C =14556.659124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.238 3.762 3 C -0.189 4.189 4 C 0.176 3.824 5 C -0.119 4.119 6 N -0.333 5.333 7 N -0.292 5.292 8 C 0.225 3.775 9 C 0.611 3.389 10 O -0.540 6.540 11 N -0.687 5.687 12 C 0.137 3.863 13 C -0.109 4.109 14 H 0.088 0.912 15 C -0.158 4.158 16 C 0.146 3.854 17 H 0.061 0.939 18 N -0.734 5.734 19 C -0.231 4.231 20 H 0.058 0.942 21 C -0.066 4.066 22 N -0.984 5.984 23 Si 0.953 3.047 24 H -0.280 1.280 25 H -0.296 1.296 26 H -0.250 1.250 27 C -0.128 4.128 28 N -0.533 5.533 29 C 0.435 3.565 30 N -0.498 5.498 31 H 0.113 0.887 32 H 0.080 0.920 33 H 0.132 0.868 34 H 0.236 0.764 35 H 0.108 0.892 36 H 0.142 0.858 37 H 0.068 0.932 38 H 0.417 0.583 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.048 0.952 43 H 0.366 0.634 44 H 0.258 0.742 45 H 0.069 0.931 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.904 39.032 4.535 40.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.075 3.925 3 C -0.213 4.213 4 C 0.061 3.939 5 C -0.175 4.175 6 N -0.115 5.115 7 N -0.127 5.127 8 C -0.059 4.059 9 C 0.391 3.609 10 O -0.415 6.415 11 N -0.338 5.338 12 C 0.015 3.985 13 C -0.128 4.128 14 H 0.106 0.894 15 C -0.198 4.198 16 C 0.036 3.964 17 H 0.080 0.920 18 N -0.376 5.376 19 C -0.362 4.362 20 H 0.076 0.924 21 C -0.257 4.257 22 N -0.634 5.634 23 Si 0.781 3.219 24 H -0.206 1.206 25 H -0.222 1.222 26 H -0.175 1.175 27 C -0.167 4.167 28 N -0.269 5.269 29 C 0.075 3.925 30 N -0.217 5.217 31 H 0.131 0.869 32 H 0.099 0.901 33 H 0.150 0.850 34 H 0.252 0.748 35 H 0.127 0.873 36 H 0.160 0.840 37 H 0.087 0.913 38 H 0.254 0.746 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.113 0.887 42 H 0.067 0.933 43 H 0.200 0.800 44 H 0.066 0.934 45 H 0.087 0.913 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -9.661 38.313 4.382 39.755 hybrid contribution -0.648 -0.358 0.641 0.979 sum -10.309 37.956 5.023 39.650 Atomic orbital electron populations 1.21161 0.82756 1.06569 1.06036 1.23062 1.00129 0.86390 0.82879 1.22405 0.90051 1.02961 1.05880 1.21919 0.93460 0.86129 0.92393 1.21240 1.00408 0.89839 1.06045 1.49098 1.06282 1.09323 1.46774 1.78670 0.91136 1.12949 1.29995 1.24073 0.93166 0.90024 0.98619 1.16367 0.84312 0.82482 0.77713 1.90813 1.27722 1.72183 1.50808 1.45812 1.12346 1.04096 1.71565 1.21622 0.85013 0.88555 1.03350 1.22615 0.99775 0.91930 0.98482 0.89378 1.23758 1.01087 0.98680 0.96315 1.21352 0.91758 0.87817 0.95456 0.92048 1.42461 1.56303 1.18125 1.20706 1.19077 1.22203 0.94104 1.00768 0.92410 1.25507 1.01301 0.96287 1.02594 1.69886 1.42394 1.10356 1.40783 0.85430 0.78961 0.77037 0.80503 1.20634 1.22240 1.17468 1.23348 0.97499 0.95797 1.00031 1.70719 0.97898 1.28549 1.29755 1.22806 0.90992 0.81910 0.96797 1.68033 1.00434 1.31621 1.21642 0.86868 0.90117 0.85007 0.74778 0.87327 0.83999 0.91262 0.74574 0.90021 0.90032 0.88741 0.93277 0.80042 0.93362 0.91272 0.86921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.09 10.19 71.24 0.73 0.64 16 2 C 0.24 2.34 6.83 43.11 0.29 2.63 16 3 C -0.19 -0.77 9.39 22.15 0.21 -0.56 16 4 C 0.18 2.03 6.86 41.30 0.28 2.31 16 5 C -0.12 -0.52 10.13 71.24 0.72 0.20 16 6 N -0.33 -7.79 3.91 -185.76 -0.73 -8.52 16 7 N -0.29 -8.69 12.67 -52.60 -0.67 -9.35 16 8 C 0.23 7.12 7.92 137.40 1.09 8.21 16 9 C 0.61 19.13 7.84 86.87 0.68 19.81 16 10 O -0.54 -19.19 17.07 -3.79 -0.06 -19.25 16 11 N -0.69 -18.62 5.55 -465.69 -2.59 -21.20 16 12 C 0.14 3.35 5.52 86.38 0.48 3.82 16 13 C -0.11 -2.94 3.62 -10.27 -0.04 -2.98 16 14 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 15 C -0.16 -4.98 7.43 31.12 0.23 -4.75 16 16 C 0.15 5.38 4.56 45.52 0.21 5.59 16 17 H 0.06 2.38 8.10 -2.39 -0.02 2.36 16 18 N -0.73 -34.28 5.11 -320.43 -1.64 -35.92 16 19 C -0.23 -13.31 10.45 84.03 0.88 -12.43 16 20 H 0.06 3.65 8.06 -2.91 -0.02 3.63 16 21 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 22 N -0.98 -64.08 13.97 21.65 0.30 -63.77 16 23 Si 0.95 46.32 27.73 68.60 1.90 48.22 16 24 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 25 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 26 H -0.25 -10.92 6.52 99.48 0.65 -10.27 16 27 C -0.13 -3.52 7.39 31.12 0.23 -3.29 16 28 N -0.53 -16.98 10.89 -192.62 -2.10 -19.07 16 29 C 0.44 11.98 8.99 261.57 2.35 14.33 16 30 N -0.50 -10.94 10.40 -185.60 -1.93 -12.87 16 31 H 0.11 -0.16 8.14 -2.39 -0.02 -0.18 16 32 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.13 -0.91 8.09 -2.39 -0.02 -0.93 16 34 H 0.24 -1.96 8.06 -2.91 -0.02 -1.98 16 35 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 36 H 0.14 -0.62 8.09 -2.38 -0.02 -0.64 16 37 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.42 11.14 8.14 -92.71 -0.76 10.39 16 39 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.08 1.95 7.85 -2.39 -0.02 1.93 16 41 H 0.09 2.59 7.90 -2.39 -0.02 2.57 16 42 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.37 16.40 5.76 -92.71 -0.53 15.86 16 44 H 0.26 15.98 8.31 -92.70 -0.77 15.21 16 45 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 46 H 0.11 2.49 8.10 -2.38 -0.02 2.47 16 Total: -1.00 -89.45 392.24 0.99 -88.46 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: -0.31 Total: 23.20 kcal Atomic # 6 Polarization: 21.27 SS G_CDS: 8.81 Total: 30.08 kcal Atomic # 7 Polarization: -161.37 SS G_CDS: -9.34 Total: -170.71 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.06 Total: -19.25 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 1.90 Total: 48.22 kcal Total: -89.45 0.99 -88.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086547070.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.961 kcal (2) G-P(sol) polarization free energy of solvation -89.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds