Wall clock time and date at job start Wed Apr 1 2020 03:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30442 * 125.98854 * 2 1 4 4 N 1.39933 * 108.89808 * 179.97438 * 3 2 1 5 5 H 0.96997 * 125.75606 * 180.02562 * 4 3 2 6 6 C 1.34256 * 108.48958 * 359.74696 * 4 3 2 7 7 C 1.38044 * 107.41813 * 0.40048 * 6 4 3 8 8 C 1.47426 * 126.41472 * 179.87101 * 7 6 4 9 9 O 1.21598 * 120.00311 * 179.67846 * 8 7 6 10 10 N 1.34780 * 120.00251 * 359.68357 * 8 7 6 11 11 C 1.47420 * 125.65180 * 180.02562 * 10 8 7 12 12 C 1.54907 * 104.83524 * 204.09058 * 11 10 8 13 13 H 1.09001 * 111.00122 * 81.10082 * 12 11 10 14 14 C 1.50698 * 111.00642 * 204.91658 * 12 11 10 15 15 C 1.39869 * 126.03662 * 58.23769 * 14 12 11 16 16 N 1.30840 * 108.19760 * 179.81818 * 15 14 12 17 17 N 1.40082 * 108.20762 * 0.43737 * 16 15 14 18 18 C 1.46501 * 126.03657 * 179.73829 * 17 16 15 19 19 C 1.34946 * 107.92404 * 359.72382 * 17 16 15 20 20 C 1.55155 * 101.58383 * 322.99460 * 12 11 10 21 21 H 1.08998 * 110.71769 * 277.13840 * 20 12 11 22 22 N 1.46495 * 110.72438 * 153.86514 * 20 12 11 23 23 C 1.36930 * 120.00334 * 160.02422 * 22 20 12 24 24 H 1.08006 * 120.00200 * 359.97438 * 23 22 20 25 25 C 1.38815 * 120.00466 * 179.97438 * 23 22 20 26 26 N 1.31624 * 119.99399 * 359.97438 * 25 23 22 27 27 Si 1.86797 * 120.00545 * 180.02562 * 25 23 22 28 28 H 1.48508 * 109.46682 * 359.97438 * 27 25 23 29 29 H 1.48500 * 109.47302 * 119.99487 * 27 25 23 30 30 H 1.48499 * 109.47123 * 240.00017 * 27 25 23 31 31 C 1.47026 * 125.64391 * 359.97438 * 10 8 7 32 32 H 1.08999 * 109.47132 * 270.00188 * 1 2 3 33 33 H 1.08997 * 109.46963 * 30.00452 * 1 2 3 34 34 H 1.08997 * 109.47014 * 149.99797 * 1 2 3 35 35 H 1.08007 * 126.29158 * 180.24315 * 6 4 3 36 36 H 1.08997 * 110.36858 * 322.93289 * 11 10 8 37 37 H 1.08999 * 110.36307 * 85.25503 * 11 10 8 38 38 H 1.07990 * 125.90302 * 0.02562 * 15 14 12 39 39 H 1.09000 * 109.47204 * 269.97502 * 18 17 16 40 40 H 1.08995 * 109.47638 * 29.98205 * 18 17 16 41 41 H 1.09005 * 109.46909 * 149.98010 * 18 17 16 42 42 H 1.08008 * 126.12589 * 179.97438 * 19 17 16 43 43 H 0.97005 * 119.99930 * 340.01546 * 22 20 12 44 44 H 0.96998 * 119.99462 * 179.97438 * 26 25 23 45 45 H 1.08998 * 109.88351 * 298.39161 * 31 10 8 46 46 H 1.08998 * 109.88379 * 59.55951 * 31 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6110 0.6442 0.0006 5 1 4.3841 1.2300 0.0011 6 6 3.6438 -0.6979 0.0066 7 6 2.3372 -1.1432 0.0006 8 6 1.8915 -2.5485 0.0013 9 8 0.7039 -2.8098 0.0014 10 7 2.8004 -3.5438 0.0019 11 6 2.4952 -4.9860 0.0020 12 6 3.7502 -5.6569 0.6139 13 1 3.7324 -5.5997 1.7023 14 6 3.8778 -7.0860 0.1530 15 6 3.9724 -7.5172 -1.1742 16 7 4.0729 -8.8218 -1.1738 17 7 4.0353 -9.2633 0.1551 18 6 4.1130 -10.6559 0.6031 19 6 3.9151 -8.1791 0.9496 20 6 4.8887 -4.7801 0.0288 21 1 5.1478 -5.1063 -0.9785 22 7 6.0645 -4.8067 0.9022 23 6 7.2930 -4.4586 0.4074 24 1 7.3952 -4.1649 -0.6269 25 6 8.4071 -4.4833 1.2352 26 7 8.2824 -4.8407 2.4958 27 14 10.0828 -4.0078 0.5605 28 1 9.9546 -3.6479 -0.8746 29 1 10.6094 -2.8441 1.3179 30 1 11.0165 -5.1539 0.7014 31 6 4.2604 -3.3708 0.0013 32 1 -0.3633 0.0000 1.0277 33 1 -0.3633 0.8899 -0.5139 34 1 -0.3633 -0.8899 -0.5138 35 1 4.5297 -1.3158 0.0122 36 1 1.6187 -5.1883 0.6176 37 1 2.3344 -5.3398 -1.0163 38 1 3.9671 -6.8828 -2.0481 39 1 3.1087 -11.0756 0.6610 40 1 4.7077 -11.2328 -0.1051 41 1 4.5805 -10.6955 1.5870 42 1 3.8585 -8.1833 2.0282 43 1 5.9728 -5.0707 1.8311 44 1 9.0610 -4.8583 3.0741 45 1 4.5710 -2.8439 -0.9009 46 1 4.5677 -2.8107 0.8845 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086990199.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:42 Heat of formation + Delta-G solvation = 145.670245 kcal Electronic energy + Delta-G solvation = -30164.342994 eV Core-core repulsion = 26093.302747 eV Total energy + Delta-G solvation = -4071.040247 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.40272 -41.00826 -39.26597 -37.25520 -34.11828 -33.41563 -32.88562 -31.99232 -30.86994 -30.25142 -28.56158 -27.87859 -27.51671 -26.14981 -24.43488 -23.19560 -22.01448 -21.09883 -20.58271 -20.21098 -19.45749 -19.39088 -17.38323 -17.28336 -16.61452 -16.25804 -15.69983 -15.27048 -15.13243 -14.93794 -14.56189 -14.21809 -14.15240 -13.78955 -13.48677 -13.26869 -13.03039 -12.85669 -12.80249 -12.76186 -12.66128 -12.51962 -12.24091 -12.02130 -11.91920 -11.65555 -11.17079 -10.97276 -10.91702 -10.78582 -10.61080 -10.19381 -10.10647 -9.86483 -9.59965 -9.47754 -9.17764 -9.08714 -8.77658 -8.28319 -8.03529 -7.13191 -5.91412 -3.21438 1.60185 2.12886 2.21536 2.70247 2.72980 3.05009 3.32653 3.35939 3.40355 3.41634 3.65881 4.45268 4.55263 4.63793 4.76873 4.97983 5.03594 5.09823 5.13871 5.21897 5.25261 5.37662 5.41520 5.45912 5.52211 5.53962 5.63053 5.71168 5.73684 5.79565 5.86177 5.91382 6.01197 6.04379 6.15152 6.23051 6.32738 6.46108 6.52793 6.63047 6.82134 6.89932 7.11260 7.21466 7.55471 7.57634 7.87256 7.92399 8.25997 8.52423 9.38617 9.92905 10.27710 11.30478 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.007440 B = 0.004228 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3762.433275 B = 6621.652119 C = 9896.852675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.132 3.868 3 N -0.308 5.308 4 N -0.464 5.464 5 H 0.444 0.556 6 C 0.102 3.898 7 C -0.287 4.287 8 C 0.607 3.393 9 O -0.555 6.555 10 N -0.611 5.611 11 C 0.123 3.877 12 C -0.031 4.031 13 H 0.088 0.912 14 C -0.203 4.203 15 C 0.060 3.940 16 N -0.304 5.304 17 N -0.381 5.381 18 C 0.105 3.895 19 C 0.062 3.938 20 C 0.183 3.817 21 H 0.068 0.932 22 N -0.708 5.708 23 C -0.245 4.245 24 H 0.073 0.927 25 C -0.007 4.007 26 N -0.928 5.928 27 Si 0.903 3.097 28 H -0.279 1.279 29 H -0.291 1.291 30 H -0.291 1.291 31 C 0.064 3.936 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.203 0.797 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.179 0.821 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.171 0.829 43 H 0.387 0.613 44 H 0.255 0.745 45 H 0.062 0.938 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.729 -0.634 -3.160 11.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.036 4.036 3 N -0.132 5.132 4 N -0.168 5.168 5 H 0.288 0.712 6 C -0.050 4.050 7 C -0.301 4.301 8 C 0.398 3.602 9 O -0.434 6.434 10 N -0.344 5.344 11 C 0.000 4.000 12 C -0.052 4.052 13 H 0.107 0.893 14 C -0.215 4.215 15 C -0.127 4.127 16 N -0.125 5.125 17 N -0.164 5.164 18 C -0.036 4.036 19 C -0.084 4.084 20 C 0.070 3.930 21 H 0.086 0.914 22 N -0.348 5.348 23 C -0.376 4.376 24 H 0.090 0.910 25 C -0.203 4.203 26 N -0.575 5.575 27 Si 0.734 3.266 28 H -0.205 1.205 29 H -0.219 1.219 30 H -0.219 1.219 31 C -0.063 4.063 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.114 0.886 35 H 0.219 0.781 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.195 0.805 39 H 0.088 0.912 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.188 0.812 43 H 0.221 0.779 44 H 0.065 0.935 45 H 0.080 0.920 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.071 -0.630 -3.913 11.759 hybrid contribution 1.769 0.351 0.640 1.914 sum -9.302 -0.279 -3.273 9.865 Atomic orbital electron populations 1.20319 0.85830 1.03855 1.03442 1.22438 0.97242 0.88768 0.95181 1.77084 0.86519 1.22641 1.26916 1.46143 1.07620 1.05780 1.57255 0.71190 1.24253 1.00263 0.85435 0.95085 1.20213 0.92090 0.94412 1.23412 1.16861 0.84592 0.82965 0.75832 1.90699 1.15982 1.84139 1.52630 1.48274 1.07172 1.06103 1.72801 1.22170 0.97786 0.79156 1.00879 1.20849 0.94557 0.89462 1.00313 0.89334 1.19598 1.14913 0.94519 0.92485 1.23650 0.99325 0.91886 0.97794 1.77281 1.25027 1.13027 0.97158 1.48313 1.57358 1.06343 1.04351 1.21768 1.02810 0.78161 1.00892 1.22265 1.01928 0.86484 0.97675 1.21239 0.86790 0.89359 0.95578 0.91387 1.42312 1.02165 1.80042 1.10277 1.19264 0.84993 1.38135 0.95243 0.90953 1.24727 0.97884 1.01960 0.95760 1.69664 1.29319 1.53797 1.04753 0.86186 0.84635 0.77735 0.78005 1.20461 1.21859 1.21853 1.23617 0.78575 1.03121 1.00954 0.90336 0.91282 0.88608 0.78093 0.90694 0.91470 0.80451 0.91188 0.89623 0.89642 0.81184 0.77879 0.93456 0.92032 0.90507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.93 9.92 36.01 0.36 -0.57 16 2 C 0.13 1.92 7.26 -82.02 -0.60 1.32 16 3 N -0.31 -4.37 12.63 33.89 0.43 -3.94 16 4 N -0.46 -5.48 7.29 30.85 0.22 -5.25 16 5 H 0.44 3.69 8.96 -182.73 -1.64 2.05 16 6 C 0.10 1.31 10.50 -16.56 -0.17 1.14 16 7 C -0.29 -4.30 6.10 -105.07 -0.64 -4.94 16 8 C 0.61 9.94 7.85 -12.52 -0.10 9.84 16 9 O -0.55 -10.17 15.17 5.28 0.08 -10.09 16 10 N -0.61 -9.21 3.33 -171.79 -0.57 -9.78 16 11 C 0.12 1.74 6.35 -2.53 -0.02 1.73 16 12 C -0.03 -0.45 3.06 -89.63 -0.27 -0.73 16 13 H 0.09 1.34 8.00 -51.93 -0.42 0.93 16 14 C -0.20 -3.00 5.02 -105.06 -0.53 -3.53 16 15 C 0.06 0.89 10.81 -17.36 -0.19 0.71 16 16 N -0.30 -4.80 12.58 30.62 0.39 -4.42 16 17 N -0.38 -5.23 4.01 -68.16 -0.27 -5.50 16 18 C 0.11 0.96 11.47 59.85 0.69 1.64 16 19 C 0.06 0.85 11.40 -17.22 -0.20 0.66 16 20 C 0.18 3.08 3.03 -66.10 -0.20 2.88 16 21 H 0.07 1.18 7.48 -51.93 -0.39 0.79 16 22 N -0.71 -15.28 5.18 -51.65 -0.27 -15.55 16 23 C -0.25 -6.02 9.98 -15.06 -0.15 -6.17 16 24 H 0.07 1.72 7.83 -52.48 -0.41 1.31 16 25 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 26 N -0.93 -25.80 13.06 55.49 0.72 -25.07 16 27 Si 0.90 20.80 29.55 -169.99 -5.02 15.77 16 28 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 29 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 30 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 31 C 0.06 0.96 4.74 -3.06 -0.01 0.94 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.10 1.26 6.55 -51.93 -0.34 0.92 16 35 H 0.20 2.36 4.42 -52.48 -0.23 2.13 16 36 H 0.07 1.08 8.04 -51.93 -0.42 0.66 16 37 H 0.07 0.91 7.62 -51.93 -0.40 0.51 16 38 H 0.18 2.29 8.04 -52.49 -0.42 1.86 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.17 1.90 8.06 -52.48 -0.42 1.47 16 43 H 0.39 9.07 7.71 -40.82 -0.31 8.75 16 44 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 45 H 0.06 0.86 7.03 -51.93 -0.36 0.49 16 46 H 0.08 1.23 6.71 -51.93 -0.35 0.88 16 LS Contribution 382.58 15.07 5.77 5.77 Total: -1.00 -33.33 382.58 -8.02 -41.34 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -7.36 Total: 12.07 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: -2.13 Total: 4.65 kcal Atomic # 7 Polarization: -70.16 SS G_CDS: 0.65 Total: -69.51 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.08 Total: -10.09 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.33 -8.02 -41.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086990199.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.011 kcal (2) G-P(sol) polarization free energy of solvation -33.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds