Wall clock time and date at job start Wed Apr 1 2020 03:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30442 * 125.98854 * 2 1 4 4 N 1.39933 * 108.89808 * 179.97438 * 3 2 1 5 5 H 0.96997 * 125.75606 * 180.02562 * 4 3 2 6 6 C 1.34256 * 108.48958 * 359.74696 * 4 3 2 7 7 C 1.38044 * 107.41813 * 0.40048 * 6 4 3 8 8 C 1.47426 * 126.41472 * 179.87101 * 7 6 4 9 9 O 1.21598 * 120.00311 * 179.67846 * 8 7 6 10 10 N 1.34780 * 120.00251 * 359.68357 * 8 7 6 11 11 C 1.47420 * 125.65180 * 180.02562 * 10 8 7 12 12 C 1.54907 * 104.83524 * 204.09058 * 11 10 8 13 13 H 1.09001 * 111.00122 * 81.10082 * 12 11 10 14 14 C 1.50698 * 111.00642 * 204.91658 * 12 11 10 15 15 C 1.39869 * 126.03662 * 58.23769 * 14 12 11 16 16 N 1.30840 * 108.19760 * 179.81818 * 15 14 12 17 17 N 1.40082 * 108.20762 * 0.43737 * 16 15 14 18 18 C 1.46501 * 126.03657 * 179.73829 * 17 16 15 19 19 C 1.34946 * 107.92404 * 359.72382 * 17 16 15 20 20 C 1.55155 * 101.58383 * 322.99460 * 12 11 10 21 21 H 1.08998 * 110.71769 * 277.13840 * 20 12 11 22 22 N 1.46495 * 110.72438 * 153.86514 * 20 12 11 23 23 C 1.36930 * 120.00334 * 160.02422 * 22 20 12 24 24 H 1.08006 * 120.00200 * 359.97438 * 23 22 20 25 25 C 1.38815 * 120.00466 * 179.97438 * 23 22 20 26 26 N 1.31624 * 119.99399 * 359.97438 * 25 23 22 27 27 Si 1.86797 * 120.00545 * 180.02562 * 25 23 22 28 28 H 1.48508 * 109.46682 * 359.97438 * 27 25 23 29 29 H 1.48500 * 109.47302 * 119.99487 * 27 25 23 30 30 H 1.48499 * 109.47123 * 240.00017 * 27 25 23 31 31 C 1.47026 * 125.64391 * 359.97438 * 10 8 7 32 32 H 1.08999 * 109.47132 * 270.00188 * 1 2 3 33 33 H 1.08997 * 109.46963 * 30.00452 * 1 2 3 34 34 H 1.08997 * 109.47014 * 149.99797 * 1 2 3 35 35 H 1.08007 * 126.29158 * 180.24315 * 6 4 3 36 36 H 1.08997 * 110.36858 * 322.93289 * 11 10 8 37 37 H 1.08999 * 110.36307 * 85.25503 * 11 10 8 38 38 H 1.07990 * 125.90302 * 0.02562 * 15 14 12 39 39 H 1.09000 * 109.47204 * 269.97502 * 18 17 16 40 40 H 1.08995 * 109.47638 * 29.98205 * 18 17 16 41 41 H 1.09005 * 109.46909 * 149.98010 * 18 17 16 42 42 H 1.08008 * 126.12589 * 179.97438 * 19 17 16 43 43 H 0.97005 * 119.99930 * 340.01546 * 22 20 12 44 44 H 0.96998 * 119.99462 * 179.97438 * 26 25 23 45 45 H 1.08998 * 109.88351 * 298.39161 * 31 10 8 46 46 H 1.08998 * 109.88379 * 59.55951 * 31 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6110 0.6442 0.0006 5 1 4.3841 1.2300 0.0011 6 6 3.6438 -0.6979 0.0066 7 6 2.3372 -1.1432 0.0006 8 6 1.8915 -2.5485 0.0013 9 8 0.7039 -2.8098 0.0014 10 7 2.8004 -3.5438 0.0019 11 6 2.4952 -4.9860 0.0020 12 6 3.7502 -5.6569 0.6139 13 1 3.7324 -5.5997 1.7023 14 6 3.8778 -7.0860 0.1530 15 6 3.9724 -7.5172 -1.1742 16 7 4.0729 -8.8218 -1.1738 17 7 4.0353 -9.2633 0.1551 18 6 4.1130 -10.6559 0.6031 19 6 3.9151 -8.1791 0.9496 20 6 4.8887 -4.7801 0.0288 21 1 5.1478 -5.1063 -0.9785 22 7 6.0645 -4.8067 0.9022 23 6 7.2930 -4.4586 0.4074 24 1 7.3952 -4.1649 -0.6269 25 6 8.4071 -4.4833 1.2352 26 7 8.2824 -4.8407 2.4958 27 14 10.0828 -4.0078 0.5605 28 1 9.9546 -3.6479 -0.8746 29 1 10.6094 -2.8441 1.3179 30 1 11.0165 -5.1539 0.7014 31 6 4.2604 -3.3708 0.0013 32 1 -0.3633 0.0000 1.0277 33 1 -0.3633 0.8899 -0.5139 34 1 -0.3633 -0.8899 -0.5138 35 1 4.5297 -1.3158 0.0122 36 1 1.6187 -5.1883 0.6176 37 1 2.3344 -5.3398 -1.0163 38 1 3.9671 -6.8828 -2.0481 39 1 3.1087 -11.0756 0.6610 40 1 4.7077 -11.2328 -0.1051 41 1 4.5805 -10.6955 1.5870 42 1 3.8585 -8.1833 2.0282 43 1 5.9728 -5.0707 1.8311 44 1 9.0610 -4.8583 3.0741 45 1 4.5710 -2.8439 -0.9009 46 1 4.5677 -2.8107 0.8845 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086990199.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:41 Heat of formation + Delta-G solvation = 122.809671 kcal Electronic energy + Delta-G solvation = -30165.334302 eV Core-core repulsion = 26093.302747 eV Total energy + Delta-G solvation = -4072.031556 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.48466 -42.09063 -40.49803 -38.57929 -35.77607 -34.50722 -33.91420 -33.27966 -32.42082 -31.36548 -29.73955 -28.91515 -28.85594 -27.12365 -26.00332 -24.61389 -23.14107 -22.28335 -21.77002 -21.32376 -20.67977 -20.46600 -19.07656 -18.43244 -17.81552 -17.50076 -16.88109 -16.48480 -16.34169 -16.16061 -15.84168 -15.40511 -15.25646 -15.23586 -14.94271 -14.59385 -14.29674 -13.98298 -13.78893 -13.70031 -13.67776 -13.61791 -13.40900 -13.16254 -13.07934 -12.93524 -12.86018 -12.51821 -12.29716 -12.08934 -11.97629 -11.75243 -11.67456 -11.32655 -10.98168 -10.80780 -10.51857 -10.24735 -9.90825 -9.49057 -9.21571 -8.89383 -7.87411 -5.14635 0.52893 1.05591 1.09660 1.50962 1.54566 1.61356 1.73340 1.79779 1.92108 2.17621 2.44792 2.61708 3.44693 3.46521 3.64265 3.75652 3.79146 3.92564 4.03959 4.14018 4.23891 4.27330 4.35760 4.43466 4.45109 4.49197 4.49642 4.59833 4.66576 4.72547 4.80580 4.83457 4.89948 4.93165 5.01075 5.02344 5.09282 5.25485 5.40816 5.49996 5.51877 5.64241 5.80044 6.22383 6.23482 6.33598 6.49921 6.64491 6.82988 7.27481 7.42672 8.15461 8.39338 9.35575 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.007440 B = 0.004228 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3762.433275 B = 6621.652119 C = 9896.852675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.121 3.879 3 N -0.321 5.321 4 N -0.450 5.450 5 H 0.459 0.541 6 C 0.117 3.883 7 C -0.313 4.313 8 C 0.605 3.395 9 O -0.580 6.580 10 N -0.608 5.608 11 C 0.128 3.872 12 C -0.014 4.014 13 H 0.083 0.917 14 C -0.223 4.223 15 C 0.051 3.949 16 N -0.333 5.333 17 N -0.382 5.382 18 C 0.095 3.905 19 C 0.060 3.940 20 C 0.180 3.820 21 H 0.068 0.932 22 N -0.716 5.716 23 C -0.228 4.228 24 H 0.081 0.919 25 C -0.066 4.066 26 N -0.965 5.965 27 Si 0.957 3.043 28 H -0.264 1.264 29 H -0.297 1.297 30 H -0.305 1.305 31 C 0.075 3.925 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.214 0.786 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.191 0.809 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.106 0.894 42 H 0.194 0.806 43 H 0.376 0.624 44 H 0.247 0.753 45 H 0.079 0.921 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.882 -0.337 -3.816 11.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.047 4.047 3 N -0.145 5.145 4 N -0.155 5.155 5 H 0.307 0.693 6 C -0.037 4.037 7 C -0.328 4.328 8 C 0.396 3.604 9 O -0.462 6.462 10 N -0.340 5.340 11 C 0.005 3.995 12 C -0.035 4.035 13 H 0.102 0.898 14 C -0.235 4.235 15 C -0.135 4.135 16 N -0.155 5.155 17 N -0.165 5.165 18 C -0.045 4.045 19 C -0.087 4.087 20 C 0.070 3.930 21 H 0.086 0.914 22 N -0.354 5.354 23 C -0.360 4.360 24 H 0.099 0.901 25 C -0.258 4.258 26 N -0.616 5.616 27 Si 0.788 3.212 28 H -0.189 1.189 29 H -0.224 1.224 30 H -0.233 1.233 31 C -0.050 4.050 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.231 0.769 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.207 0.793 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.124 0.876 42 H 0.211 0.789 43 H 0.209 0.791 44 H 0.056 0.944 45 H 0.097 0.903 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.240 -0.318 -4.625 12.158 hybrid contribution 1.754 0.205 0.821 1.948 sum -9.485 -0.114 -3.804 10.220 Atomic orbital electron populations 1.20329 0.84790 1.04099 1.03922 1.22772 0.98225 0.88682 0.95029 1.77053 0.87329 1.22743 1.27371 1.46183 1.07641 1.05757 1.55953 0.69320 1.24321 0.99833 0.85832 0.93743 1.20256 0.93182 0.93917 1.25404 1.17065 0.84329 0.83597 0.75410 1.90681 1.16940 1.84582 1.53950 1.48248 1.06957 1.06341 1.72474 1.22174 0.97382 0.78618 1.01334 1.20641 0.93645 0.89426 0.99810 0.89833 1.19671 1.16358 0.94665 0.92761 1.23909 0.99189 0.91969 0.98407 1.77218 1.26127 1.13497 0.98699 1.48691 1.56277 1.07826 1.03686 1.22128 1.04430 0.76073 1.01856 1.22707 1.00754 0.86406 0.98796 1.21357 0.86049 0.90835 0.94802 0.91408 1.42397 1.02760 1.79993 1.10272 1.19619 0.85861 1.35257 0.95284 0.90087 1.25332 1.00719 1.03646 0.96139 1.69795 1.29421 1.56458 1.05877 0.85316 0.81223 0.76567 0.78115 1.18871 1.22444 1.23267 1.23349 0.78464 1.01678 1.01541 0.89697 0.89519 0.89791 0.76946 0.90837 0.90565 0.79257 0.89157 0.89435 0.87592 0.78892 0.79120 0.94359 0.90302 0.91105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.72 9.92 71.24 0.71 -1.01 16 2 C 0.12 3.37 7.26 43.51 0.32 3.69 16 3 N -0.32 -8.57 12.63 -46.68 -0.59 -9.16 16 4 N -0.45 -9.69 7.29 -56.31 -0.41 -10.10 16 5 H 0.46 6.55 8.96 -213.43 -1.91 4.64 16 6 C 0.12 2.77 10.50 84.28 0.88 3.65 16 7 C -0.31 -9.00 6.10 -20.15 -0.12 -9.13 16 8 C 0.60 19.26 7.85 86.66 0.68 19.94 16 9 O -0.58 -21.04 15.17 -4.03 -0.06 -21.10 16 10 N -0.61 -17.56 3.33 -815.67 -2.71 -20.27 16 11 C 0.13 3.47 6.35 86.86 0.55 4.02 16 12 C -0.01 -0.40 3.06 -10.15 -0.03 -0.43 16 13 H 0.08 2.47 8.00 -2.39 -0.02 2.45 16 14 C -0.22 -6.34 5.02 -20.15 -0.10 -6.45 16 15 C 0.05 1.47 10.81 85.24 0.92 2.39 16 16 N -0.33 -10.25 12.58 -57.03 -0.72 -10.97 16 17 N -0.38 -9.96 4.01 -369.56 -1.48 -11.44 16 18 C 0.10 1.54 11.47 127.77 1.47 3.01 16 19 C 0.06 1.57 11.40 83.54 0.95 2.52 16 20 C 0.18 5.83 3.03 46.18 0.14 5.97 16 21 H 0.07 2.24 7.48 -2.39 -0.02 2.22 16 22 N -0.72 -30.25 5.18 -317.33 -1.64 -31.89 16 23 C -0.23 -10.92 9.98 84.04 0.84 -10.08 16 24 H 0.08 3.69 7.83 -2.91 -0.02 3.66 16 25 C -0.07 -3.40 5.50 84.86 0.47 -2.93 16 26 N -0.96 -54.04 13.06 21.65 0.28 -53.76 16 27 Si 0.96 42.46 29.55 68.60 2.03 44.48 16 28 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 29 H -0.30 -13.30 7.11 99.48 0.71 -12.59 16 30 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 31 C 0.08 2.14 4.74 86.73 0.41 2.55 16 32 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.08 2.19 6.55 -2.39 -0.02 2.17 16 35 H 0.21 4.50 4.42 -2.91 -0.01 4.48 16 36 H 0.07 2.05 8.04 -2.39 -0.02 2.03 16 37 H 0.08 1.96 7.62 -2.39 -0.02 1.94 16 38 H 0.19 4.71 8.04 -2.92 -0.02 4.68 16 39 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16 42 H 0.19 3.95 8.06 -2.91 -0.02 3.93 16 43 H 0.38 17.56 7.71 -92.70 -0.72 16.85 16 44 H 0.25 13.70 8.31 -92.71 -0.77 12.93 16 45 H 0.08 1.99 7.03 -2.39 -0.02 1.98 16 46 H 0.07 2.15 6.71 -2.39 -0.02 2.13 16 Total: -1.00 -70.49 382.58 1.19 -69.30 By element: Atomic # 1 Polarization: 38.77 SS G_CDS: -1.58 Total: 37.19 kcal Atomic # 6 Polarization: 9.64 SS G_CDS: 8.08 Total: 17.72 kcal Atomic # 7 Polarization: -140.33 SS G_CDS: -7.27 Total: -147.60 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.06 Total: -21.10 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Total: -70.49 1.19 -69.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086990199.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.111 kcal (2) G-P(sol) polarization free energy of solvation -70.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds