Wall clock time and date at job start Wed Apr 1 2020 03:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35559 * 125.82024 * 2 1 4 4 N 1.35407 * 107.15738 * 179.76837 * 3 2 1 5 5 H 0.96999 * 126.43779 * 180.22248 * 4 3 2 6 6 C 1.36667 * 107.12012 * 0.35702 * 4 3 2 7 7 C 1.47407 * 125.86225 * 179.89646 * 6 4 3 8 8 O 1.21604 * 120.00124 * 359.72369 * 7 6 4 9 9 N 1.34773 * 119.99852 * 179.71575 * 7 6 4 10 10 C 1.47026 * 125.65185 * 180.02562 * 9 7 6 11 11 C 1.54316 * 107.27699 * 178.90507 * 10 9 7 12 12 H 1.09000 * 110.71638 * 96.34802 * 11 10 9 13 13 C 1.50694 * 110.72447 * 219.44403 * 11 10 9 14 14 C 1.39876 * 126.03821 * 56.13784 * 13 11 10 15 15 N 1.30834 * 108.20073 * 180.28579 * 14 13 11 16 16 N 1.40084 * 108.20770 * 359.58566 * 15 14 13 17 17 C 1.46500 * 126.03708 * 180.17238 * 16 15 14 18 18 C 1.34947 * 107.92204 * 0.41501 * 16 15 14 19 19 C 1.55155 * 103.10185 * 337.89992 * 11 10 9 20 20 H 1.09000 * 111.00301 * 277.33720 * 19 11 10 21 21 N 1.46506 * 111.00605 * 153.48463 * 19 11 10 22 22 C 1.36933 * 120.00008 * 155.00000 * 21 19 11 23 23 H 1.08007 * 120.00188 * 0.02562 * 22 21 19 24 24 C 1.38810 * 120.00190 * 179.97438 * 22 21 19 25 25 N 1.31624 * 119.99818 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 120.00337 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47419 * 89.99942 * 26 24 22 28 28 H 1.48506 * 109.47316 * 210.00147 * 26 24 22 29 29 H 1.48506 * 109.46958 * 329.99862 * 26 24 22 30 30 C 1.47431 * 125.65215 * 359.96239 * 9 7 6 31 31 N 1.31609 * 108.27233 * 359.63756 * 6 4 3 32 32 H 1.08994 * 109.47750 * 269.97543 * 1 2 3 33 33 H 1.09002 * 109.46768 * 29.98428 * 1 2 3 34 34 H 1.09007 * 109.46773 * 149.97576 * 1 2 3 35 35 H 1.07997 * 126.42726 * 0.02562 * 3 2 1 36 36 H 1.09003 * 109.87605 * 59.48732 * 10 9 7 37 37 H 1.08998 * 110.01122 * 298.40626 * 10 9 7 38 38 H 1.08002 * 125.89548 * 0.02562 * 14 13 11 39 39 H 1.08995 * 109.47266 * 270.28769 * 17 16 15 40 40 H 1.08996 * 109.47009 * 30.29267 * 17 16 15 41 41 H 1.09011 * 109.46832 * 150.28859 * 17 16 15 42 42 H 1.08009 * 126.12562 * 179.72063 * 18 16 15 43 43 H 0.96998 * 119.99621 * 334.99932 * 21 19 11 44 44 H 0.96997 * 119.99934 * 179.97438 * 25 24 22 45 45 H 1.09007 * 110.36266 * 323.00547 * 30 9 7 46 46 H 1.09001 * 110.36324 * 85.20959 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3004 1.0992 0.0000 4 7 3.5833 0.6659 0.0052 5 1 4.3788 1.2209 0.0096 6 6 3.5465 -0.7003 0.0002 7 6 4.7175 -1.5957 0.0011 8 8 5.8402 -1.1285 0.0015 9 7 4.5437 -2.9322 0.0014 10 6 5.6180 -3.9360 0.0028 11 6 4.9470 -5.3253 0.0310 12 1 4.8685 -5.7361 -0.9756 13 6 5.7061 -6.2660 0.9309 14 6 6.0052 -6.0519 2.2804 15 7 6.6787 -7.0844 2.7185 16 7 6.8215 -7.9939 1.6626 17 6 7.5086 -9.2863 1.7252 18 6 6.2190 -7.4668 0.5762 19 6 3.5403 -5.0248 0.6124 20 1 3.5699 -4.9748 1.7008 21 7 2.5623 -6.0177 0.1608 22 6 1.4412 -6.2634 0.9077 23 1 1.2777 -5.7249 1.8295 24 6 0.5142 -7.2038 0.4796 25 7 0.7132 -7.8598 -0.6441 26 14 -1.0154 -7.5385 1.4981 27 1 -2.1074 -6.6302 1.0645 28 1 -1.4392 -8.9488 1.3062 29 1 -0.7159 -7.3025 2.9333 30 6 3.2450 -3.6299 0.0019 31 7 2.2861 -1.0791 0.0001 32 1 -0.3634 -0.0004 1.0276 33 1 -0.3633 0.8902 -0.5136 34 1 -0.3633 -0.8898 -0.5143 35 1 1.9711 2.1277 0.0004 36 1 6.2434 -3.8083 0.8865 37 1 6.2240 -3.8350 -0.8975 38 1 5.7314 -5.1823 2.8594 39 1 8.5603 -9.1512 1.4730 40 1 7.4259 -9.6932 2.7329 41 1 7.0506 -9.9760 1.0161 42 1 6.1578 -7.9217 -0.4015 43 1 2.7089 -6.5011 -0.6673 44 1 0.0657 -8.5172 -0.9430 45 1 2.5247 -3.0902 0.6168 46 1 2.8703 -3.7345 -1.0163 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087001398.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:15 Heat of formation + Delta-G solvation = 107.314739 kcal Electronic energy + Delta-G solvation = -30143.876115 eV Core-core repulsion = 26071.172649 eV Total energy + Delta-G solvation = -4072.703467 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.25887 -42.16549 -40.72019 -38.74989 -35.85523 -34.57335 -34.14455 -33.34003 -32.47042 -31.92762 -29.98152 -28.96524 -28.11925 -27.09363 -25.90880 -24.86181 -23.18393 -22.49485 -21.71669 -21.22503 -20.95506 -20.63504 -19.16318 -18.95060 -17.82175 -17.49460 -17.16835 -16.63589 -16.56196 -16.21036 -15.93192 -15.37776 -15.29856 -15.02790 -14.97618 -14.67331 -14.28857 -14.20091 -13.91592 -13.88760 -13.59069 -13.55664 -13.42110 -13.26268 -13.08041 -12.99802 -12.85391 -12.55840 -12.38346 -12.14753 -11.84279 -11.75311 -11.46184 -11.37438 -11.14654 -11.07925 -10.81487 -10.26856 -9.80349 -9.32605 -9.26481 -8.86386 -7.87871 -5.14739 0.32073 1.02670 1.46153 1.51380 1.51989 1.57111 1.59465 1.77967 1.88839 2.32401 2.42186 2.62119 3.14220 3.43407 3.57377 3.78977 3.90608 4.01304 4.08522 4.14557 4.16722 4.27949 4.38318 4.41366 4.46685 4.48796 4.58287 4.64204 4.71807 4.77663 4.86384 4.87859 4.96595 4.98504 5.09297 5.11991 5.17764 5.23715 5.33298 5.46669 5.60840 5.72424 5.76011 6.22066 6.23629 6.32222 6.35508 6.73343 6.79290 7.05350 7.41980 8.13108 8.39199 9.34917 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.007311 B = 0.004395 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3828.709729 B = 6369.012582 C = 9646.343840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.036 4.036 3 C 0.010 3.990 4 N -0.515 5.515 5 H 0.440 0.560 6 C 0.115 3.885 7 C 0.613 3.387 8 O -0.576 6.576 9 N -0.587 5.587 10 C 0.128 3.872 11 C -0.015 4.015 12 H 0.093 0.907 13 C -0.224 4.224 14 C 0.048 3.952 15 N -0.332 5.332 16 N -0.381 5.381 17 C 0.095 3.905 18 C 0.065 3.935 19 C 0.181 3.819 20 H 0.058 0.942 21 N -0.710 5.710 22 C -0.231 4.231 23 H 0.070 0.930 24 C -0.065 4.065 25 N -0.963 5.963 26 Si 0.960 3.040 27 H -0.287 1.287 28 H -0.297 1.297 29 H -0.275 1.275 30 C 0.096 3.904 31 N -0.457 5.457 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.052 0.948 35 H 0.236 0.764 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.182 0.818 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.198 0.802 43 H 0.378 0.622 44 H 0.250 0.750 45 H 0.085 0.915 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.458 12.323 0.113 15.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.170 4.170 3 C -0.130 4.130 4 N -0.118 5.118 5 H 0.281 0.719 6 C -0.144 4.144 7 C 0.400 3.600 8 O -0.457 6.457 9 N -0.318 5.318 10 C 0.005 3.995 11 C -0.036 4.036 12 H 0.111 0.889 13 C -0.236 4.236 14 C -0.138 4.138 15 N -0.154 5.154 16 N -0.163 5.163 17 C -0.045 4.045 18 C -0.081 4.081 19 C 0.070 3.930 20 H 0.076 0.924 21 N -0.349 5.349 22 C -0.363 4.363 23 H 0.088 0.912 24 C -0.258 4.258 25 N -0.614 5.614 26 Si 0.790 3.210 27 H -0.214 1.214 28 H -0.224 1.224 29 H -0.201 1.201 30 C -0.030 4.030 31 N -0.181 5.181 32 H 0.092 0.908 33 H 0.120 0.880 34 H 0.071 0.929 35 H 0.252 0.748 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.199 0.801 39 H 0.110 0.890 40 H 0.105 0.895 41 H 0.125 0.875 42 H 0.215 0.785 43 H 0.211 0.789 44 H 0.058 0.942 45 H 0.103 0.897 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.395 11.037 1.289 15.217 hybrid contribution -0.820 0.746 -0.563 1.243 sum 9.576 11.783 0.726 15.201 Atomic orbital electron populations 1.20125 0.85727 1.03509 1.02969 1.21587 0.98380 0.88314 1.08747 1.23450 0.81658 1.02290 1.05641 1.42917 1.10240 1.06359 1.52267 0.71872 1.22228 0.93174 0.83370 1.15627 1.16273 0.85728 0.80876 0.77077 1.90773 1.24654 1.75837 1.54457 1.48077 1.10257 1.03830 1.69601 1.22045 0.89097 0.85527 1.02792 1.20582 0.93065 0.91564 0.98410 0.88865 1.19693 1.10242 0.98574 0.95097 1.23812 0.97283 0.97795 0.94871 1.77204 1.24011 1.01899 1.12268 1.48704 1.43646 1.17028 1.06965 1.22147 0.97733 0.79193 1.05402 1.22709 0.96490 0.94700 0.94243 1.21479 0.87872 0.87114 0.96583 0.92419 1.42221 1.21882 1.44285 1.26483 1.19503 0.97758 1.16242 1.02821 0.91206 1.25336 1.01681 0.99955 0.98785 1.69781 1.37735 1.29912 1.23976 0.85337 0.80607 0.76446 0.78582 1.21443 1.22394 1.20058 1.23346 0.83923 0.94296 1.01386 1.70291 0.99925 1.32297 1.15603 0.90773 0.88029 0.92868 0.74756 0.90732 0.90263 0.80058 0.89020 0.89451 0.87469 0.78530 0.78897 0.94159 0.89679 0.92803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.29 10.42 71.24 0.74 -0.54 16 2 C -0.04 -0.90 7.07 41.75 0.30 -0.60 16 3 C 0.01 0.16 11.91 83.52 0.99 1.16 16 4 N -0.51 -10.90 6.14 -188.03 -1.16 -12.06 16 5 H 0.44 6.94 8.96 -92.71 -0.83 6.11 16 6 C 0.12 3.53 7.80 136.28 1.06 4.59 16 7 C 0.61 20.80 7.84 86.66 0.68 21.48 16 8 O -0.58 -20.78 17.42 -4.04 -0.07 -20.85 16 9 N -0.59 -19.75 3.33 -815.29 -2.71 -22.46 16 10 C 0.13 3.83 6.43 86.73 0.56 4.39 16 11 C -0.02 -0.48 3.00 -10.36 -0.03 -0.51 16 12 H 0.09 2.90 7.99 -2.39 -0.02 2.88 16 13 C -0.22 -7.02 4.94 -20.15 -0.10 -7.12 16 14 C 0.05 1.54 10.75 85.24 0.92 2.46 16 15 N -0.33 -10.95 12.58 -57.02 -0.72 -11.67 16 16 N -0.38 -10.56 4.01 -369.56 -1.48 -12.04 16 17 C 0.10 1.65 11.47 127.77 1.47 3.12 16 18 C 0.07 1.83 11.40 83.54 0.95 2.78 16 19 C 0.18 7.04 3.14 46.45 0.15 7.18 16 20 H 0.06 2.37 7.57 -2.39 -0.02 2.36 16 21 N -0.71 -34.14 5.25 -316.05 -1.66 -35.80 16 22 C -0.23 -12.53 9.96 84.03 0.84 -11.69 16 23 H 0.07 3.73 7.83 -2.91 -0.02 3.71 16 24 C -0.06 -3.65 5.50 84.86 0.47 -3.18 16 25 N -0.96 -57.05 13.06 21.65 0.28 -56.77 16 26 Si 0.96 45.92 29.55 68.60 2.03 47.94 16 27 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 28 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 29 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 30 C 0.10 3.61 5.84 86.92 0.51 4.12 16 31 N -0.46 -14.92 8.28 -177.64 -1.47 -16.39 16 32 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.24 1.38 8.06 -2.91 -0.02 1.36 16 36 H 0.07 2.21 7.30 -2.39 -0.02 2.19 16 37 H 0.08 2.20 8.14 -2.39 -0.02 2.19 16 38 H 0.18 5.37 8.06 -2.91 -0.02 5.35 16 39 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.11 1.41 8.14 -2.38 -0.02 1.39 16 42 H 0.20 4.28 8.06 -2.91 -0.02 4.26 16 43 H 0.38 19.25 7.76 -92.71 -0.72 18.53 16 44 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 45 H 0.09 3.45 6.17 -2.38 -0.01 3.44 16 46 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -76.83 389.63 2.02 -74.81 By element: Atomic # 1 Polarization: 38.17 SS G_CDS: -0.52 Total: 37.66 kcal Atomic # 6 Polarization: 18.13 SS G_CDS: 9.49 Total: 27.62 kcal Atomic # 7 Polarization: -158.27 SS G_CDS: -8.92 Total: -167.19 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.07 Total: -20.85 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.94 kcal Total: -76.83 2.02 -74.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087001398.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.125 kcal (2) G-P(sol) polarization free energy of solvation -76.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds