Wall clock time and date at job start Wed Apr 1 2020 03:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33314 * 126.10918 * 2 1 4 4 C 1.30860 * 109.68755 * 180.02562 * 3 2 1 5 5 N 1.34499 * 109.16242 * 359.72815 * 4 3 2 6 6 H 0.96990 * 126.47582 * 180.29478 * 5 4 3 7 7 C 1.36667 * 126.10492 * 180.02562 * 2 1 3 8 8 C 1.46762 * 126.84386 * 359.97438 * 7 2 1 9 9 O 1.21679 * 120.00575 * 359.97438 * 8 7 2 10 10 N 1.34780 * 120.00031 * 179.97438 * 8 7 2 11 11 C 1.47420 * 125.65180 * 180.02562 * 10 8 7 12 12 C 1.54907 * 104.83524 * 204.09058 * 11 10 8 13 13 H 1.09001 * 111.00122 * 81.10082 * 12 11 10 14 14 C 1.50698 * 111.00642 * 204.91658 * 12 11 10 15 15 C 1.39869 * 126.03662 * 58.23769 * 14 12 11 16 16 N 1.30840 * 108.19760 * 179.81818 * 15 14 12 17 17 N 1.40082 * 108.20762 * 0.43737 * 16 15 14 18 18 C 1.46501 * 126.03657 * 179.73829 * 17 16 15 19 19 C 1.34946 * 107.92404 * 359.72382 * 17 16 15 20 20 C 1.55155 * 101.58383 * 322.99460 * 12 11 10 21 21 H 1.08998 * 110.71769 * 277.13840 * 20 12 11 22 22 N 1.46495 * 110.72438 * 153.86514 * 20 12 11 23 23 C 1.36930 * 120.00334 * 160.02422 * 22 20 12 24 24 H 1.08006 * 120.00200 * 359.97438 * 23 22 20 25 25 C 1.38815 * 120.00466 * 179.97438 * 23 22 20 26 26 N 1.31624 * 119.99399 * 359.97438 * 25 23 22 27 27 Si 1.86797 * 120.00545 * 180.02562 * 25 23 22 28 28 H 1.48508 * 109.46682 * 359.97438 * 27 25 23 29 29 H 1.48500 * 109.47302 * 119.99487 * 27 25 23 30 30 H 1.48499 * 109.47123 * 240.00017 * 27 25 23 31 31 C 1.47026 * 125.64391 * 359.97141 * 10 8 7 32 32 H 1.09002 * 109.47891 * 269.98112 * 1 2 3 33 33 H 1.09006 * 109.46846 * 29.98163 * 1 2 3 34 34 H 1.09006 * 109.47306 * 149.97759 * 1 2 3 35 35 H 1.07996 * 125.41969 * 179.97438 * 4 3 2 36 36 H 1.08997 * 110.36858 * 322.93289 * 11 10 8 37 37 H 1.08999 * 110.36307 * 85.25503 * 11 10 8 38 38 H 1.07990 * 125.90302 * 0.02562 * 15 14 12 39 39 H 1.09000 * 109.47204 * 269.97502 * 18 17 16 40 40 H 1.08995 * 109.47638 * 29.98205 * 18 17 16 41 41 H 1.09005 * 109.46909 * 149.98010 * 18 17 16 42 42 H 1.08008 * 126.12589 * 179.97438 * 19 17 16 43 43 H 0.97005 * 119.99930 * 340.01546 * 22 20 12 44 44 H 0.96998 * 119.99462 * 179.97438 * 26 25 23 45 45 H 1.08998 * 109.88351 * 298.39161 * 31 10 8 46 46 H 1.08998 * 109.88379 * 59.55951 * 31 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2926 1.0770 0.0000 4 6 3.5478 0.7071 -0.0006 5 7 3.6121 -0.6363 0.0051 6 1 4.4187 -1.1750 0.0100 7 6 2.3123 -1.1042 -0.0005 8 6 1.8819 -2.5073 -0.0006 9 8 0.6961 -2.7801 0.0003 10 7 2.8003 -3.4938 -0.0016 11 6 2.5089 -4.9390 -0.0024 12 6 3.7708 -5.5983 0.6078 13 1 3.7533 -5.5422 1.6963 14 6 3.9116 -7.0258 0.1456 15 6 4.0092 -7.4550 -1.1820 16 7 4.1221 -8.7585 -1.1828 17 7 4.0899 -9.2014 0.1458 18 6 4.1813 -10.5936 0.5926 19 6 3.9601 -8.1191 0.9413 20 6 4.9004 -4.7102 0.0225 21 1 5.1617 -5.0331 -0.9852 22 7 6.0771 -4.7262 0.8949 23 6 7.3018 -4.3661 0.3994 24 1 7.4003 -4.0706 -0.6348 25 6 8.4167 -4.3807 1.2262 26 7 8.2966 -4.7404 2.4866 27 14 10.0873 -3.8887 0.5504 28 1 9.9544 -3.5289 -0.8843 29 1 10.6034 -2.7207 1.3084 30 1 11.0320 -5.0260 0.6896 31 6 4.2586 -3.3069 -0.0033 32 1 -0.3635 -0.0003 1.0276 33 1 -0.3633 0.8902 -0.5136 34 1 -0.3634 -0.8898 -0.5142 35 1 4.3970 1.3743 -0.0011 36 1 1.6349 -5.1501 0.6138 37 1 2.3506 -5.2934 -1.0209 38 1 3.9970 -6.8199 -2.0554 39 1 3.1811 -11.0229 0.6510 40 1 4.7808 -11.1642 -0.1166 41 1 4.6500 -10.6295 1.5761 42 1 3.9044 -8.1247 2.0200 43 1 5.9888 -4.9919 1.8237 44 1 9.0758 -4.7510 3.0642 45 1 4.5633 -2.7764 -0.9054 46 1 4.5613 -2.7447 0.8800 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087012182.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:20 Heat of formation + Delta-G solvation = 108.166583 kcal Electronic energy + Delta-G solvation = -30252.953081 eV Core-core repulsion = 26180.286553 eV Total energy + Delta-G solvation = -4072.666528 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.26180 -42.17271 -40.71345 -38.79703 -35.91016 -34.77854 -34.05875 -33.24412 -32.47097 -31.93127 -30.04793 -29.08867 -28.29273 -27.11565 -25.94224 -24.59877 -23.30353 -22.44439 -22.11822 -21.63080 -20.78171 -20.48255 -19.16114 -18.70260 -17.80742 -17.53152 -17.08560 -16.64714 -16.58711 -16.21838 -15.98700 -15.49381 -15.33084 -15.30178 -15.02285 -14.74351 -14.44620 -14.08307 -13.86715 -13.76535 -13.73350 -13.69359 -13.51513 -13.22043 -13.19008 -13.07483 -12.89615 -12.61293 -12.46431 -12.14271 -11.85007 -11.76887 -11.53965 -11.39298 -11.02900 -11.01127 -10.91564 -10.29043 -9.89765 -9.43077 -9.27411 -8.97696 -7.92899 -5.21403 0.25960 1.01411 1.48632 1.52134 1.58998 1.69633 1.77429 1.82889 1.89484 2.12559 2.22612 2.57053 3.35514 3.40093 3.57445 3.62334 3.78641 3.88402 3.93750 4.07582 4.12980 4.23392 4.27064 4.30557 4.37108 4.47019 4.47741 4.55093 4.69156 4.70700 4.73427 4.82693 4.84710 4.87054 4.96919 4.98407 5.05220 5.15067 5.25490 5.41355 5.57001 5.57859 5.74845 6.19222 6.27064 6.27906 6.34893 6.78693 6.87128 6.99595 7.36880 8.07526 8.31881 9.29728 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.007454 B = 0.004267 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3755.481576 B = 6560.575998 C = 9829.142807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.079 3.921 3 N -0.529 5.529 4 C 0.231 3.769 5 N -0.550 5.550 6 H 0.433 0.567 7 C -0.109 4.109 8 C 0.606 3.394 9 O -0.558 6.558 10 N -0.610 5.610 11 C 0.126 3.874 12 C -0.013 4.013 13 H 0.085 0.915 14 C -0.225 4.225 15 C 0.051 3.949 16 N -0.332 5.332 17 N -0.381 5.381 18 C 0.095 3.905 19 C 0.062 3.938 20 C 0.184 3.816 21 H 0.070 0.930 22 N -0.715 5.715 23 C -0.235 4.235 24 H 0.081 0.919 25 C -0.063 4.063 26 N -0.963 5.963 27 Si 0.959 3.041 28 H -0.265 1.265 29 H -0.295 1.295 30 H -0.303 1.303 31 C 0.072 3.928 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.257 0.743 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.190 0.810 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.106 0.894 42 H 0.195 0.805 43 H 0.377 0.623 44 H 0.249 0.751 45 H 0.073 0.927 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.353 -1.366 -3.730 11.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.056 4.056 3 N -0.249 5.249 4 C -0.053 4.053 5 N -0.159 5.159 6 H 0.279 0.721 7 C -0.225 4.225 8 C 0.396 3.604 9 O -0.438 6.438 10 N -0.342 5.342 11 C 0.004 3.996 12 C -0.034 4.034 13 H 0.103 0.897 14 C -0.236 4.236 15 C -0.135 4.135 16 N -0.154 5.154 17 N -0.164 5.164 18 C -0.045 4.045 19 C -0.085 4.085 20 C 0.073 3.927 21 H 0.088 0.912 22 N -0.353 5.353 23 C -0.367 4.367 24 H 0.099 0.901 25 C -0.256 4.256 26 N -0.613 5.613 27 Si 0.789 3.211 28 H -0.189 1.189 29 H -0.223 1.223 30 H -0.231 1.231 31 C -0.054 4.054 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.272 0.728 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.207 0.793 39 H 0.109 0.891 40 H 0.106 0.894 41 H 0.125 0.875 42 H 0.212 0.788 43 H 0.209 0.791 44 H 0.058 0.942 45 H 0.091 0.909 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.002 -1.894 -4.526 12.047 hybrid contribution 2.018 -0.175 0.805 2.180 sum -8.984 -2.069 -3.721 9.942 Atomic orbital electron populations 1.20246 0.85918 1.03530 1.03188 1.21382 0.97669 0.86952 0.99608 1.70144 1.01558 1.30556 1.22675 1.26037 0.97784 0.82521 0.98994 1.44041 1.08128 1.09404 1.54330 0.72111 1.20790 0.85496 0.94443 1.21789 1.16643 0.84674 0.82718 0.76394 1.90763 1.16497 1.83305 1.53195 1.48361 1.06793 1.06910 1.72143 1.22258 0.97715 0.77885 1.01744 1.20629 0.93324 0.89577 0.99867 0.89714 1.19622 1.16688 0.94523 0.92800 1.23902 0.99203 0.92028 0.98349 1.77227 1.26032 1.13434 0.98733 1.48701 1.56070 1.07934 1.03664 1.22141 1.04454 0.76024 1.01907 1.22711 1.00524 0.86410 0.98811 1.21299 0.86170 0.90158 0.95078 0.91188 1.42388 1.02952 1.79664 1.10302 1.19602 0.86046 1.35670 0.95343 0.90149 1.25361 1.00835 1.03284 0.96114 1.69792 1.29593 1.56009 1.05922 0.85294 0.80976 0.76682 0.78116 1.18900 1.22273 1.23100 1.23259 0.78592 1.02634 1.00912 0.90481 0.89969 0.90360 0.72752 0.90330 0.90171 0.79291 0.89098 0.89400 0.87548 0.78818 0.79052 0.94213 0.90918 0.91648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.81 9.88 71.23 0.70 -1.11 16 2 C 0.08 2.31 7.15 41.96 0.30 2.61 16 3 N -0.53 -14.55 11.20 -187.59 -2.10 -16.66 16 4 C 0.23 4.98 13.01 180.33 2.35 7.33 16 5 N -0.55 -13.28 5.67 -188.04 -1.07 -14.35 16 6 H 0.43 9.69 5.13 -92.72 -0.48 9.21 16 7 C -0.11 -3.21 6.89 40.01 0.28 -2.93 16 8 C 0.61 19.18 7.82 86.47 0.68 19.86 16 9 O -0.56 -19.85 15.07 -4.28 -0.06 -19.91 16 10 N -0.61 -17.46 3.33 -816.40 -2.72 -20.18 16 11 C 0.13 3.35 6.35 86.86 0.55 3.90 16 12 C -0.01 -0.36 3.06 -10.15 -0.03 -0.39 16 13 H 0.08 2.46 8.00 -2.39 -0.02 2.44 16 14 C -0.22 -6.26 5.02 -20.15 -0.10 -6.36 16 15 C 0.05 1.44 10.81 85.24 0.92 2.36 16 16 N -0.33 -10.05 12.58 -57.03 -0.72 -10.77 16 17 N -0.38 -9.73 4.01 -369.56 -1.48 -11.21 16 18 C 0.09 1.49 11.47 127.77 1.47 2.96 16 19 C 0.06 1.59 11.40 83.54 0.95 2.54 16 20 C 0.18 5.92 3.03 46.18 0.14 6.06 16 21 H 0.07 2.29 7.48 -2.39 -0.02 2.28 16 22 N -0.71 -30.04 5.18 -317.33 -1.64 -31.69 16 23 C -0.23 -11.19 9.98 84.04 0.84 -10.36 16 24 H 0.08 3.65 7.83 -2.91 -0.02 3.63 16 25 C -0.06 -3.23 5.50 84.86 0.47 -2.77 16 26 N -0.96 -53.58 13.06 21.65 0.28 -53.30 16 27 Si 0.96 42.19 29.55 68.60 2.03 44.22 16 28 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 29 H -0.30 -13.11 7.11 99.48 0.71 -12.40 16 30 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 31 C 0.07 2.07 4.87 86.73 0.42 2.49 16 32 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 34 H 0.08 2.13 6.48 -2.38 -0.02 2.12 16 35 H 0.26 2.92 8.06 -2.91 -0.02 2.90 16 36 H 0.08 2.11 8.04 -2.39 -0.02 2.09 16 37 H 0.08 1.99 7.62 -2.39 -0.02 1.97 16 38 H 0.19 4.61 8.04 -2.92 -0.02 4.58 16 39 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.11 1.23 8.14 -2.38 -0.02 1.21 16 42 H 0.19 3.85 8.06 -2.91 -0.02 3.82 16 43 H 0.38 17.49 7.71 -92.70 -0.72 16.77 16 44 H 0.25 13.67 8.31 -92.71 -0.77 12.90 16 45 H 0.07 1.89 7.28 -2.39 -0.02 1.87 16 46 H 0.07 2.02 6.98 -2.39 -0.02 2.00 16 Total: -1.00 -69.79 382.94 2.29 -67.50 By element: Atomic # 1 Polarization: 40.31 SS G_CDS: -0.16 Total: 40.15 kcal Atomic # 6 Polarization: 16.26 SS G_CDS: 9.93 Total: 26.19 kcal Atomic # 7 Polarization: -148.70 SS G_CDS: -9.44 Total: -158.15 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.06 Total: -19.91 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -69.79 2.29 -67.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087012182.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.667 kcal (2) G-P(sol) polarization free energy of solvation -69.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds