Wall clock time and date at job start Wed Apr 1 2020 02:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35681 * 120.48244 * 2 1 4 4 C 1.40176 * 119.27096 * 179.97438 * 3 2 1 5 5 N 1.31259 * 120.35392 * 0.02562 * 4 3 2 6 6 C 1.33995 * 120.88529 * 359.97438 * 5 4 3 7 7 N 1.32490 * 132.34446 * 180.02562 * 6 5 4 8 8 C 1.33480 * 109.74940 * 179.35234 * 7 6 5 9 9 C 1.48129 * 125.32312 * 180.02562 * 8 7 6 10 10 O 1.21525 * 120.00073 * 180.57170 * 9 8 7 11 11 N 1.34782 * 119.99970 * 0.57654 * 9 8 7 12 12 C 1.46496 * 119.99785 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.46872 * 179.97438 * 12 11 9 14 14 H 1.08998 * 110.88535 * 51.11777 * 13 12 11 15 15 C 1.54911 * 111.00826 * 287.19693 * 13 12 11 16 16 N 1.47419 * 104.83334 * 204.91719 * 15 13 12 17 17 C 1.36932 * 125.64601 * 204.14539 * 16 15 13 18 18 H 1.07997 * 120.00688 * 0.02562 * 17 16 15 19 19 C 1.38815 * 120.00054 * 179.97438 * 17 16 15 20 20 N 1.31625 * 120.00152 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00264 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47004 * 90.00190 * 21 19 17 23 23 H 1.48495 * 109.47412 * 210.00053 * 21 19 17 24 24 H 1.48496 * 109.47083 * 330.00048 * 21 19 17 25 25 C 1.47023 * 108.70424 * 24.12736 * 16 15 13 26 26 C 1.54324 * 107.27101 * 358.93957 * 25 16 15 27 27 H 1.09001 * 110.86874 * 96.24376 * 26 25 16 28 28 C 1.53002 * 110.72032 * 219.44325 * 26 25 16 29 29 N 1.31981 * 109.35167 * 0.55624 * 8 7 6 30 30 N 1.36162 * 120.48673 * 179.72148 * 2 1 3 31 31 H 1.09002 * 109.47152 * 89.99893 * 1 2 3 32 32 H 1.09001 * 109.46980 * 329.99993 * 1 2 3 33 33 H 1.09004 * 109.47113 * 209.99974 * 1 2 3 34 34 H 1.07993 * 120.36635 * 359.95873 * 3 2 1 35 35 H 1.07989 * 119.82238 * 179.97438 * 4 3 2 36 36 H 0.97003 * 119.99879 * 359.97438 * 11 9 8 37 37 H 1.08999 * 109.47509 * 299.99657 * 12 11 9 38 38 H 1.08999 * 109.47256 * 59.99936 * 12 11 9 39 39 H 1.09008 * 110.36055 * 323.75744 * 15 13 12 40 40 H 1.09000 * 110.36774 * 86.07247 * 15 13 12 41 41 H 0.96996 * 120.00585 * 179.97438 * 20 19 17 42 42 H 1.09005 * 109.87982 * 239.52097 * 25 16 15 43 43 H 1.08995 * 110.01115 * 118.43390 * 25 16 15 44 44 H 1.08999 * 109.46741 * 173.52230 * 28 26 25 45 45 H 1.09000 * 109.47242 * 293.52567 * 28 26 25 46 46 H 1.08999 * 109.46562 * 53.52652 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1693 0.0000 4 6 3.5968 1.1396 0.0005 5 7 4.2360 -0.0068 0.0005 6 6 3.5665 -1.1675 0.0005 7 7 3.9690 -2.4298 0.0010 8 6 2.9091 -3.2411 0.0149 9 6 2.9637 -4.7214 0.0203 10 8 1.9344 -5.3674 0.0228 11 7 4.1550 -5.3519 0.0226 12 6 4.2089 -6.8158 0.0285 13 6 5.6692 -7.2724 0.0293 14 1 6.2314 -6.7750 0.8196 15 6 6.3259 -7.0356 -1.3537 16 7 7.4256 -8.0150 -1.4219 17 6 8.5481 -7.9016 -2.1978 18 1 8.6824 -7.0366 -2.8303 19 6 9.5142 -8.8981 -2.1707 20 7 9.3510 -9.9522 -1.3996 21 14 11.0459 -8.7431 -3.2287 22 1 12.1065 -8.0390 -2.4640 23 1 11.5248 -10.0967 -3.6077 24 1 10.7242 -7.9705 -4.4553 25 6 7.1177 -9.1334 -0.5186 26 6 5.7696 -8.8150 0.1617 27 1 4.9462 -9.3014 -0.3613 28 6 5.7944 -9.2315 1.6338 29 7 1.8049 -2.5182 0.0117 30 7 2.1978 -1.1734 0.0057 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 0.8900 0.5138 33 1 -0.3633 -0.8900 0.5138 34 1 1.6693 2.1124 -0.0007 35 1 4.1535 2.0650 0.0001 36 1 4.9766 -4.8362 0.0203 37 1 3.7091 -7.1943 0.9201 38 1 3.7085 -7.2014 -0.8598 39 1 5.6058 -7.2174 -2.1516 40 1 6.7173 -6.0204 -1.4189 41 1 10.0258 -10.6487 -1.3808 42 1 7.8999 -9.2277 0.2346 43 1 7.0366 -10.0601 -1.0866 44 1 4.8799 -8.8949 2.1220 45 1 5.8651 -10.3170 1.7031 46 1 6.6560 -8.7791 2.1248 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093178340.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:45 Heat of formation + Delta-G solvation = 101.356700 kcal Electronic energy + Delta-G solvation = -29115.143523 eV Core-core repulsion = 25042.181697 eV Total energy + Delta-G solvation = -4072.961826 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.16760 -41.14888 -39.91837 -39.40633 -36.41514 -36.19720 -34.75469 -33.04183 -32.53938 -32.23407 -30.93832 -29.51484 -28.01835 -27.22216 -25.94156 -25.28873 -24.29409 -23.10997 -21.85375 -21.65791 -20.79704 -19.81830 -19.33866 -18.84193 -18.26147 -18.05936 -17.28888 -16.80943 -16.52642 -16.51909 -15.94188 -15.63114 -15.19893 -15.03391 -14.88876 -14.52434 -14.42650 -14.38326 -14.15489 -13.89122 -13.82443 -13.44740 -13.34359 -13.30707 -13.12100 -12.85329 -12.70352 -12.64695 -12.42384 -11.98852 -11.87581 -11.79144 -11.65092 -11.55193 -11.39153 -11.23109 -11.10833 -10.98852 -10.69759 -10.29545 -9.94725 -8.88677 -7.84121 -5.19594 -0.77187 -0.52836 0.51921 0.53678 1.45030 1.47257 1.55820 1.58758 1.88006 2.12946 2.29575 2.49544 2.81880 3.19106 3.28852 3.33151 3.57816 3.75165 3.83829 3.91998 3.94305 4.09205 4.27205 4.34963 4.43102 4.48420 4.50089 4.55614 4.58873 4.67412 4.73552 4.77031 4.83861 4.95442 4.96399 5.04231 5.11555 5.12496 5.20170 5.25826 5.37289 5.44787 5.47520 5.73421 5.82805 6.05657 6.21316 6.26838 6.55127 6.79842 7.11645 7.78665 8.43243 9.26002 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.014976 B = 0.002242 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.157439 B =12483.245029 C =13915.606516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.169 3.831 3 C -0.187 4.187 4 C 0.223 3.777 5 N -0.492 5.492 6 C 0.428 3.572 7 N -0.532 5.532 8 C 0.226 3.774 9 C 0.612 3.388 10 O -0.540 6.540 11 N -0.686 5.686 12 C 0.142 3.858 13 C -0.092 4.092 14 H 0.089 0.911 15 C 0.135 3.865 16 N -0.629 5.629 17 C -0.242 4.242 18 H 0.080 0.920 19 C -0.067 4.067 20 N -0.950 5.950 21 Si 0.979 3.021 22 H -0.285 1.285 23 H -0.294 1.294 24 H -0.271 1.271 25 C 0.192 3.808 26 C -0.099 4.099 27 H 0.080 0.920 28 C -0.128 4.128 29 N -0.294 5.294 30 N -0.329 5.329 31 H 0.106 0.894 32 H 0.141 0.859 33 H 0.066 0.934 34 H 0.236 0.764 35 H 0.245 0.755 36 H 0.418 0.582 37 H 0.091 0.909 38 H 0.073 0.927 39 H 0.020 0.980 40 H 0.042 0.958 41 H 0.247 0.753 42 H 0.017 0.983 43 H 0.002 0.998 44 H 0.077 0.923 45 H 0.056 0.944 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.774 28.134 6.645 35.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.053 3.947 3 C -0.211 4.211 4 C 0.041 3.959 5 N -0.209 5.209 6 C 0.068 3.932 7 N -0.268 5.268 8 C -0.058 4.058 9 C 0.392 3.608 10 O -0.415 6.415 11 N -0.338 5.338 12 C 0.020 3.980 13 C -0.112 4.112 14 H 0.107 0.893 15 C 0.010 3.990 16 N -0.355 5.355 17 C -0.371 4.371 18 H 0.098 0.902 19 C -0.260 4.260 20 N -0.599 5.599 21 Si 0.807 3.193 22 H -0.211 1.211 23 H -0.220 1.220 24 H -0.196 1.196 25 C 0.067 3.933 26 C -0.118 4.118 27 H 0.099 0.901 28 C -0.186 4.186 29 N -0.129 5.129 30 N -0.111 5.111 31 H 0.124 0.876 32 H 0.159 0.841 33 H 0.085 0.915 34 H 0.253 0.747 35 H 0.261 0.739 36 H 0.255 0.745 37 H 0.109 0.891 38 H 0.091 0.909 39 H 0.038 0.962 40 H 0.060 0.940 41 H 0.056 0.944 42 H 0.035 0.965 43 H 0.020 0.980 44 H 0.096 0.904 45 H 0.075 0.925 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -19.747 26.683 6.585 33.842 hybrid contribution 0.915 -0.219 -0.763 1.211 sum -18.833 26.464 5.821 32.999 Atomic orbital electron populations 1.21226 0.84085 1.06511 1.05856 1.21966 0.98628 0.81124 0.92941 1.22631 0.95130 0.98750 1.04592 1.24755 0.93170 0.95646 0.82317 1.68234 1.37118 0.95500 1.20080 1.22918 0.79132 0.93979 0.97122 1.70711 1.28860 0.97798 1.29385 1.23972 0.86540 0.96530 0.98765 1.16366 0.84467 0.82313 0.77630 1.90815 1.34374 1.65604 1.50746 1.45761 1.07737 1.08551 1.71707 1.21448 0.96046 0.77125 1.03417 1.22489 0.94113 0.96700 0.97887 0.89310 1.21774 0.89494 0.92782 0.94923 1.44785 1.19787 1.21282 1.49649 1.19445 0.95835 1.04270 1.17593 0.90249 1.25658 1.01965 0.96778 1.01637 1.70187 1.35701 1.10764 1.43248 0.85077 0.79334 0.76472 0.78445 1.21145 1.22004 1.19572 1.20994 0.92152 0.89144 0.91022 1.22322 0.97768 0.93954 0.97791 0.90138 1.21656 1.02044 1.01362 0.93502 1.78682 1.19628 0.84657 1.29943 1.49116 1.09265 1.06394 1.46320 0.87600 0.84058 0.91528 0.74733 0.73873 0.74475 0.89120 0.90909 0.96181 0.94012 0.94415 0.96524 0.97952 0.90385 0.92499 0.93450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.53 10.13 71.24 0.72 0.19 16 2 C 0.17 1.77 6.86 41.30 0.28 2.06 16 3 C -0.19 -0.26 9.72 22.15 0.22 -0.04 16 4 C 0.22 1.21 11.27 85.25 0.96 2.17 16 5 N -0.49 -9.59 10.48 -197.54 -2.07 -11.67 16 6 C 0.43 11.34 8.99 261.57 2.35 13.70 16 7 N -0.53 -16.94 10.89 -192.61 -2.10 -19.03 16 8 C 0.23 7.30 7.92 137.39 1.09 8.39 16 9 C 0.61 20.18 7.84 86.87 0.68 20.86 16 10 O -0.54 -20.22 17.07 -3.79 -0.06 -20.28 16 11 N -0.69 -20.34 5.50 -465.69 -2.56 -22.90 16 12 C 0.14 4.14 5.13 86.38 0.44 4.58 16 13 C -0.09 -3.11 2.50 -9.40 -0.02 -3.13 16 14 H 0.09 2.95 8.05 -2.39 -0.02 2.93 16 15 C 0.14 5.70 6.65 86.86 0.58 6.28 16 16 N -0.63 -33.50 3.39 -691.99 -2.35 -35.85 16 17 C -0.24 -14.11 10.28 84.03 0.86 -13.25 16 18 H 0.08 4.45 7.83 -2.91 -0.02 4.42 16 19 C -0.07 -3.97 5.49 84.86 0.47 -3.50 16 20 N -0.95 -58.65 10.31 21.65 0.22 -58.42 16 21 Si 0.98 47.27 29.55 68.60 2.03 49.29 16 22 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 23 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 24 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 25 C 0.19 9.68 4.97 86.73 0.43 10.11 16 26 C -0.10 -3.60 3.02 -9.60 -0.03 -3.63 16 27 H 0.08 2.77 8.04 -2.39 -0.02 2.75 16 28 C -0.13 -3.89 9.16 71.98 0.66 -3.23 16 29 N -0.29 -8.85 12.67 -52.60 -0.67 -9.51 16 30 N -0.33 -7.51 3.91 -185.76 -0.73 -8.24 16 31 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.14 -0.61 8.09 -2.39 -0.02 -0.63 16 33 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 34 H 0.24 -2.51 8.06 -2.91 -0.02 -2.53 16 35 H 0.25 -1.40 8.06 -2.92 -0.02 -1.42 16 36 H 0.42 12.06 8.14 -92.71 -0.76 11.31 16 37 H 0.09 2.40 8.10 -2.39 -0.02 2.38 16 38 H 0.07 2.21 7.96 -2.39 -0.02 2.19 16 39 H 0.02 0.86 7.91 -2.38 -0.02 0.84 16 40 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 42 H 0.02 0.93 7.00 -2.38 -0.02 0.92 16 43 H 0.00 0.13 7.50 -2.39 -0.02 0.11 16 44 H 0.08 1.89 8.10 -2.39 -0.02 1.87 16 45 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.05 1.51 8.06 -2.39 -0.02 1.49 16 Total: -1.00 -89.73 386.78 1.66 -88.07 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: 0.26 Total: 6.98 kcal Atomic # 6 Polarization: 31.87 SS G_CDS: 9.69 Total: 41.56 kcal Atomic # 7 Polarization: -155.38 SS G_CDS: -10.25 Total: -165.62 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.06 Total: -20.28 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.29 kcal Total: -89.73 1.66 -88.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093178340.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.426 kcal (2) G-P(sol) polarization free energy of solvation -89.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds