Wall clock time and date at job start Wed Apr 1 2020 02:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.34654 * 125.80071 * 2 1 4 4 H 0.96995 * 124.85282 * 0.02562 * 3 2 1 5 5 C 1.36456 * 110.29699 * 180.02562 * 3 2 1 6 6 C 1.34491 * 108.85516 * 359.71439 * 5 3 2 7 7 C 1.36774 * 125.79911 * 180.02562 * 2 1 3 8 8 C 1.47262 * 126.94391 * 359.97438 * 7 2 1 9 9 O 1.21625 * 120.00178 * 5.87540 * 8 7 2 10 10 N 1.34776 * 120.00131 * 185.87200 * 8 7 2 11 11 C 1.47426 * 125.64934 * 174.75053 * 10 8 7 12 12 C 1.54912 * 104.83124 * 156.13781 * 11 10 8 13 13 C 1.55159 * 101.58004 * 37.01053 * 12 11 10 14 14 H 1.08994 * 110.72412 * 82.86261 * 13 12 11 15 15 N 1.46499 * 110.86973 * 206.06261 * 13 12 11 16 16 C 1.35313 * 125.86704 * 79.78125 * 15 13 12 17 17 C 1.35354 * 106.17379 * 179.90432 * 16 15 13 18 18 C 1.50702 * 126.75136 * 180.11768 * 17 16 15 19 19 N 1.46506 * 109.46413 * 95.29779 * 18 17 16 20 20 C 1.36940 * 119.99603 * 180.02562 * 19 18 17 21 21 H 1.08001 * 120.00391 * 359.97438 * 20 19 18 22 22 C 1.38809 * 119.99562 * 180.02562 * 20 19 18 23 23 N 1.31619 * 120.00641 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99899 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47151 * 89.99467 * 24 22 20 26 26 H 1.48496 * 109.47331 * 210.00148 * 24 22 20 27 27 H 1.48505 * 109.46990 * 329.99927 * 24 22 20 28 28 N 1.33766 * 106.49561 * 0.35241 * 17 16 15 29 29 N 1.28632 * 108.89039 * 359.77424 * 28 17 16 30 30 C 1.47026 * 125.64489 * 355.06019 * 10 8 7 31 31 H 1.08997 * 109.47047 * 269.97356 * 1 2 3 32 32 H 1.09001 * 109.46955 * 29.97813 * 1 2 3 33 33 H 1.09001 * 109.47174 * 149.97523 * 1 2 3 34 34 H 1.07997 * 125.57249 * 180.02562 * 5 3 2 35 35 H 1.07997 * 126.83429 * 180.26743 * 6 5 3 36 36 H 1.09004 * 110.36240 * 274.97332 * 11 10 8 37 37 H 1.08998 * 110.36575 * 37.29638 * 11 10 8 38 38 H 1.09000 * 111.00449 * 278.93536 * 12 11 10 39 39 H 1.08999 * 111.00167 * 155.08173 * 12 11 10 40 40 H 1.08001 * 126.91702 * 0.02562 * 16 15 13 41 41 H 1.08998 * 109.47727 * 215.29439 * 18 17 16 42 42 H 1.08998 * 109.47087 * 335.30610 * 18 17 16 43 43 H 0.96999 * 120.00196 * 0.02562 * 19 18 17 44 44 H 0.96998 * 120.00004 * 180.02562 * 23 22 20 45 45 H 1.09000 * 109.88492 * 300.20589 * 30 10 8 46 46 H 1.08994 * 109.88011 * 61.22285 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0921 0.0000 4 1 1.9734 2.0073 0.0004 5 6 3.6096 0.7274 -0.0006 6 6 3.6882 -0.6152 0.0054 7 6 2.3071 -1.1093 -0.0005 8 6 1.8702 -2.5157 -0.0006 9 8 0.6892 -2.7856 -0.1080 10 7 2.7791 -3.5037 0.1183 11 6 2.4747 -4.9409 0.2423 12 6 3.7504 -5.6612 -0.2613 13 6 4.8677 -4.7295 0.2781 14 1 5.0922 -4.9594 1.3196 15 7 6.0751 -4.8317 -0.5452 16 6 6.2780 -4.2189 -1.7344 17 6 7.5166 -4.5840 -2.1402 18 6 8.2107 -4.1614 -3.4094 19 7 9.0716 -3.0083 -3.1342 20 6 9.8066 -2.4463 -4.1438 21 1 9.7520 -2.8533 -5.1427 22 6 10.6227 -1.3542 -3.8830 23 7 10.6897 -0.8584 -2.6656 24 14 11.6248 -0.5870 -5.2603 25 1 10.8278 0.4799 -5.9174 26 1 12.8692 -0.0015 -4.7002 27 1 11.9740 -1.6297 -6.2584 28 7 8.0013 -5.3978 -1.1957 29 7 7.1231 -5.5243 -0.2643 30 6 4.2382 -3.3261 0.1523 31 1 -0.3633 -0.0005 1.0276 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3633 -0.8898 -0.5142 34 1 4.4498 1.4059 -0.0003 35 1 4.5890 -1.2110 0.0106 36 1 2.2793 -5.1987 1.2832 37 1 1.6200 -5.2027 -0.3813 38 1 3.7702 -5.7052 -1.3502 39 1 3.8316 -6.6589 0.1701 40 1 5.5908 -3.5677 -2.2542 41 1 8.8169 -4.9861 -3.7840 42 1 7.4661 -3.8886 -4.1572 43 1 9.1210 -2.6430 -2.2370 44 1 11.2597 -0.0950 -2.4836 45 1 4.5753 -2.8499 -0.7685 46 1 4.5172 -2.7139 1.0098 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098651976.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:28 Heat of formation + Delta-G solvation = 142.490970 kcal Electronic energy + Delta-G solvation = -29645.058268 eV Core-core repulsion = 25573.880157 eV Total energy + Delta-G solvation = -4071.178111 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.05181 -41.56453 -39.92143 -37.78372 -35.02960 -33.89471 -32.18871 -31.84696 -31.79077 -30.48219 -29.90019 -28.99732 -26.79543 -25.91941 -24.64368 -23.32887 -22.81218 -21.63332 -21.29390 -20.94000 -20.46538 -18.92928 -17.93410 -17.59836 -16.99666 -16.70237 -16.07896 -15.76490 -15.51617 -14.99326 -14.72893 -14.55792 -14.26930 -14.08474 -13.83054 -13.63637 -13.53340 -13.20110 -13.17750 -12.92080 -12.84711 -12.73343 -12.64670 -12.39801 -11.98982 -11.92021 -11.77133 -11.42447 -11.23220 -10.89405 -10.80223 -10.47301 -10.10585 -10.08312 -9.86891 -9.70763 -9.14989 -9.01605 -8.88186 -8.83848 -8.41497 -6.90674 -5.73329 -3.02631 1.46478 1.78286 2.15976 2.20388 2.68618 2.90594 3.02529 3.28796 3.45774 3.51260 3.53182 3.74866 3.91915 4.37718 4.46048 4.52575 4.63404 4.64362 4.74233 4.80652 4.86289 4.94296 5.09290 5.15035 5.24078 5.28796 5.32024 5.32812 5.37560 5.48639 5.54201 5.56207 5.64160 5.67134 5.83312 5.88631 5.97646 6.18542 6.40457 6.48275 6.66518 6.66752 6.75117 6.79632 7.13465 7.20505 7.72168 8.00998 8.43990 8.83183 9.56008 10.11603 10.47830 11.49395 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.009609 B = 0.003004 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2913.365126 B = 9317.370582 C =11662.656834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.108 3.892 3 N -0.551 5.551 4 H 0.416 0.584 5 C -0.010 4.010 6 C -0.177 4.177 7 C -0.240 4.240 8 C 0.616 3.384 9 O -0.547 6.547 10 N -0.615 5.615 11 C 0.110 3.890 12 C -0.141 4.141 13 C 0.134 3.866 14 H 0.130 0.870 15 N -0.292 5.292 16 C -0.045 4.045 17 C -0.001 4.001 18 C 0.232 3.768 19 N -0.725 5.725 20 C -0.238 4.238 21 H 0.073 0.927 22 C -0.013 4.013 23 N -0.932 5.932 24 Si 0.908 3.092 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.281 1.281 28 N -0.252 5.252 29 N -0.092 5.092 30 C 0.092 3.908 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.174 0.826 35 H 0.153 0.847 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.100 0.900 40 H 0.187 0.813 41 H 0.039 0.961 42 H 0.038 0.962 43 H 0.386 0.614 44 H 0.254 0.746 45 H 0.091 0.909 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.336 -0.410 9.261 25.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.010 4.010 3 N -0.147 5.147 4 H 0.253 0.747 5 C -0.137 4.137 6 C -0.200 4.200 7 C -0.250 4.250 8 C 0.408 3.592 9 O -0.426 6.426 10 N -0.350 5.350 11 C -0.012 4.012 12 C -0.180 4.180 13 C 0.030 3.970 14 H 0.148 0.852 15 N -0.086 5.086 16 C -0.195 4.195 17 C -0.139 4.139 18 C 0.103 3.897 19 N -0.370 5.370 20 C -0.369 4.369 21 H 0.091 0.909 22 C -0.209 4.209 23 N -0.580 5.580 24 Si 0.739 3.261 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.207 1.207 28 N -0.119 5.119 29 N -0.070 5.070 30 C -0.033 4.033 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.121 0.879 34 H 0.191 0.809 35 H 0.171 0.829 36 H 0.094 0.906 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.119 0.881 40 H 0.204 0.796 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.219 0.781 44 H 0.064 0.936 45 H 0.109 0.891 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -23.280 -1.283 10.065 25.395 hybrid contribution 0.187 1.882 -1.042 2.160 sum -23.093 0.599 9.022 24.800 Atomic orbital electron populations 1.20602 0.87009 1.04418 1.03407 1.20306 0.93650 0.85644 1.01415 1.41664 1.06389 1.08444 1.58175 0.74690 1.21906 0.85579 0.96742 1.09486 1.22538 0.95990 0.93962 1.07522 1.19931 0.93461 0.91419 1.20219 1.16954 0.83952 0.83361 0.74903 1.90736 1.16374 1.83967 1.51523 1.48036 1.05636 1.06876 1.74406 1.22219 0.97774 0.79339 1.01900 1.23285 0.92412 0.99324 1.03027 1.22551 0.81501 0.96666 0.96241 0.85181 1.47118 1.13564 1.32517 1.15416 1.23280 1.01075 1.05194 0.90000 1.22448 0.92805 0.98957 0.99663 1.18958 0.92269 0.91142 0.87343 1.42296 1.51294 1.32836 1.10578 1.19231 1.18279 1.09158 0.90278 0.90916 1.24740 1.00561 0.99017 0.96552 1.69679 1.43007 1.26612 1.18748 0.86174 0.79616 0.79167 0.81134 1.21776 1.21815 1.20671 1.75107 1.20736 1.16289 0.99803 1.78288 0.91471 1.15548 1.21689 1.22633 0.81046 0.95166 1.04440 0.90506 0.91706 0.87917 0.80919 0.82929 0.90571 0.89189 0.89219 0.88129 0.79641 0.94295 0.94478 0.78090 0.93566 0.89133 0.88894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.74 9.94 36.01 0.36 -0.38 16 2 C 0.11 1.03 7.17 -81.88 -0.59 0.44 16 3 N -0.55 -4.12 5.90 -9.10 -0.05 -4.18 16 4 H 0.42 1.75 8.96 -40.82 -0.37 1.38 16 5 C -0.01 -0.09 11.89 -16.82 -0.20 -0.29 16 6 C -0.18 -1.82 9.40 -37.50 -0.35 -2.17 16 7 C -0.24 -2.70 6.22 -103.35 -0.64 -3.34 16 8 C 0.62 7.43 7.83 -12.59 -0.10 7.33 16 9 O -0.55 -7.75 15.03 5.26 0.08 -7.67 16 10 N -0.61 -5.99 3.33 -171.84 -0.57 -6.56 16 11 C 0.11 0.85 6.93 -2.53 -0.02 0.83 16 12 C -0.14 -1.04 6.77 -24.58 -0.17 -1.20 16 13 C 0.13 1.21 3.97 -66.09 -0.26 0.94 16 14 H 0.13 0.99 8.14 -51.93 -0.42 0.57 16 15 N -0.29 -3.90 3.36 -52.98 -0.18 -4.08 16 16 C -0.05 -0.67 10.44 -17.04 -0.18 -0.85 16 17 C 0.00 -0.02 6.61 -82.78 -0.55 -0.57 16 18 C 0.23 4.84 6.82 -5.19 -0.04 4.80 16 19 N -0.73 -18.75 5.59 -61.08 -0.34 -19.09 16 20 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 21 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 22 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 23 N -0.93 -28.31 13.06 55.49 0.72 -27.58 16 24 Si 0.91 22.35 29.55 -169.99 -5.02 17.32 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 27 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 28 N -0.25 -5.03 12.41 33.29 0.41 -4.62 16 29 N -0.09 -1.56 13.17 60.35 0.79 -0.77 16 30 C 0.09 0.82 4.62 -3.06 -0.01 0.80 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.10 0.99 6.36 -51.93 -0.33 0.66 16 34 H 0.17 1.16 8.06 -52.49 -0.42 0.74 16 35 H 0.15 1.49 4.83 -52.49 -0.25 1.24 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.09 0.74 7.99 -51.93 -0.42 0.32 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.19 2.24 7.06 -52.49 -0.37 1.87 16 41 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.39 10.71 7.66 -40.82 -0.31 10.39 16 44 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 45 H 0.09 0.88 4.89 -51.93 -0.25 0.63 16 46 H 0.09 0.77 6.85 -51.93 -0.36 0.41 16 LS Contribution 380.77 15.07 5.74 5.74 Total: -1.00 -36.69 380.77 -7.42 -44.11 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -6.01 Total: 8.31 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -2.99 Total: -0.94 kcal Atomic # 7 Polarization: -67.67 SS G_CDS: 0.79 Total: -66.88 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: 0.08 Total: -7.67 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.69 -7.42 -44.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098651976.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.601 kcal (2) G-P(sol) polarization free energy of solvation -36.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds