Wall clock time and date at job start Wed Apr 1 2020 02:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.34654 * 125.80071 * 2 1 4 4 H 0.96995 * 124.85282 * 0.02562 * 3 2 1 5 5 C 1.36456 * 110.29699 * 180.02562 * 3 2 1 6 6 C 1.34491 * 108.85516 * 359.71439 * 5 3 2 7 7 C 1.36774 * 125.79911 * 180.02562 * 2 1 3 8 8 C 1.47262 * 126.94391 * 359.97438 * 7 2 1 9 9 O 1.21625 * 120.00178 * 5.87540 * 8 7 2 10 10 N 1.34776 * 120.00131 * 185.87200 * 8 7 2 11 11 C 1.47426 * 125.64934 * 174.75053 * 10 8 7 12 12 C 1.54912 * 104.83124 * 156.13781 * 11 10 8 13 13 C 1.55159 * 101.58004 * 37.01053 * 12 11 10 14 14 H 1.08994 * 110.72412 * 82.86261 * 13 12 11 15 15 N 1.46499 * 110.86973 * 206.06261 * 13 12 11 16 16 C 1.35313 * 125.86704 * 79.78125 * 15 13 12 17 17 C 1.35354 * 106.17379 * 179.90432 * 16 15 13 18 18 C 1.50702 * 126.75136 * 180.11768 * 17 16 15 19 19 N 1.46506 * 109.46413 * 95.29779 * 18 17 16 20 20 C 1.36940 * 119.99603 * 180.02562 * 19 18 17 21 21 H 1.08001 * 120.00391 * 359.97438 * 20 19 18 22 22 C 1.38809 * 119.99562 * 180.02562 * 20 19 18 23 23 N 1.31619 * 120.00641 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99899 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47151 * 89.99467 * 24 22 20 26 26 H 1.48496 * 109.47331 * 210.00148 * 24 22 20 27 27 H 1.48505 * 109.46990 * 329.99927 * 24 22 20 28 28 N 1.33766 * 106.49561 * 0.35241 * 17 16 15 29 29 N 1.28632 * 108.89039 * 359.77424 * 28 17 16 30 30 C 1.47026 * 125.64489 * 355.06019 * 10 8 7 31 31 H 1.08997 * 109.47047 * 269.97356 * 1 2 3 32 32 H 1.09001 * 109.46955 * 29.97813 * 1 2 3 33 33 H 1.09001 * 109.47174 * 149.97523 * 1 2 3 34 34 H 1.07997 * 125.57249 * 180.02562 * 5 3 2 35 35 H 1.07997 * 126.83429 * 180.26743 * 6 5 3 36 36 H 1.09004 * 110.36240 * 274.97332 * 11 10 8 37 37 H 1.08998 * 110.36575 * 37.29638 * 11 10 8 38 38 H 1.09000 * 111.00449 * 278.93536 * 12 11 10 39 39 H 1.08999 * 111.00167 * 155.08173 * 12 11 10 40 40 H 1.08001 * 126.91702 * 0.02562 * 16 15 13 41 41 H 1.08998 * 109.47727 * 215.29439 * 18 17 16 42 42 H 1.08998 * 109.47087 * 335.30610 * 18 17 16 43 43 H 0.96999 * 120.00196 * 0.02562 * 19 18 17 44 44 H 0.96998 * 120.00004 * 180.02562 * 23 22 20 45 45 H 1.09000 * 109.88492 * 300.20589 * 30 10 8 46 46 H 1.08994 * 109.88011 * 61.22285 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0921 0.0000 4 1 1.9734 2.0073 0.0004 5 6 3.6096 0.7274 -0.0006 6 6 3.6882 -0.6152 0.0054 7 6 2.3071 -1.1093 -0.0005 8 6 1.8702 -2.5157 -0.0006 9 8 0.6892 -2.7856 -0.1080 10 7 2.7791 -3.5037 0.1183 11 6 2.4747 -4.9409 0.2423 12 6 3.7504 -5.6612 -0.2613 13 6 4.8677 -4.7295 0.2781 14 1 5.0922 -4.9594 1.3196 15 7 6.0751 -4.8317 -0.5452 16 6 6.2780 -4.2189 -1.7344 17 6 7.5166 -4.5840 -2.1402 18 6 8.2107 -4.1614 -3.4094 19 7 9.0716 -3.0083 -3.1342 20 6 9.8066 -2.4463 -4.1438 21 1 9.7520 -2.8533 -5.1427 22 6 10.6227 -1.3542 -3.8830 23 7 10.6897 -0.8584 -2.6656 24 14 11.6248 -0.5870 -5.2603 25 1 10.8278 0.4799 -5.9174 26 1 12.8692 -0.0015 -4.7002 27 1 11.9740 -1.6297 -6.2584 28 7 8.0013 -5.3978 -1.1957 29 7 7.1231 -5.5243 -0.2643 30 6 4.2382 -3.3261 0.1523 31 1 -0.3633 -0.0005 1.0276 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3633 -0.8898 -0.5142 34 1 4.4498 1.4059 -0.0003 35 1 4.5890 -1.2110 0.0106 36 1 2.2793 -5.1987 1.2832 37 1 1.6200 -5.2027 -0.3813 38 1 3.7702 -5.7052 -1.3502 39 1 3.8316 -6.6589 0.1701 40 1 5.5908 -3.5677 -2.2542 41 1 8.8169 -4.9861 -3.7840 42 1 7.4661 -3.8886 -4.1572 43 1 9.1210 -2.6430 -2.2370 44 1 11.2597 -0.0950 -2.4836 45 1 4.5753 -2.8499 -0.7685 46 1 4.5172 -2.7139 1.0098 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098651976.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:27 Heat of formation + Delta-G solvation = 116.094248 kcal Electronic energy + Delta-G solvation = -29646.202916 eV Core-core repulsion = 25573.880157 eV Total energy + Delta-G solvation = -4072.322758 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.30741 -42.26813 -40.70906 -38.67426 -36.79237 -35.13375 -33.65288 -32.91676 -32.45450 -31.62260 -31.25969 -29.81399 -27.73811 -27.41366 -25.54287 -24.74151 -24.22317 -22.37569 -22.33343 -22.05454 -21.42528 -19.69329 -19.34564 -18.61782 -18.32847 -17.47999 -17.23491 -16.66072 -16.55614 -16.32919 -15.99693 -15.61454 -15.50285 -15.10112 -15.03695 -14.73080 -14.55600 -14.30636 -14.18461 -13.91729 -13.81307 -13.56570 -13.42048 -13.36893 -13.23387 -12.94519 -12.77096 -12.66106 -12.54051 -12.46311 -12.09941 -12.07164 -11.86921 -11.79161 -11.00697 -10.98382 -10.92440 -10.21446 -9.92002 -9.74837 -9.11950 -8.98668 -7.90359 -5.20345 0.57597 0.69012 1.18233 1.46406 1.49357 1.53069 1.53951 1.62643 1.93086 2.38277 2.46241 2.61628 2.94952 3.21290 3.38227 3.45602 3.70854 3.80317 3.88622 3.94092 3.96233 4.11620 4.20181 4.25767 4.27421 4.28822 4.41932 4.43016 4.60686 4.62944 4.72153 4.72916 4.75268 4.86485 4.87272 4.93476 5.03371 5.14213 5.18867 5.23709 5.27255 5.54012 5.65142 5.75629 5.95881 6.29409 6.36946 6.62131 7.16379 7.36677 7.51393 8.07513 8.33967 9.33348 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.009609 B = 0.003004 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2913.365126 B = 9317.370582 C =11662.656834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.105 3.895 3 N -0.537 5.537 4 H 0.433 0.567 5 C -0.009 4.009 6 C -0.197 4.197 7 C -0.270 4.270 8 C 0.608 3.392 9 O -0.577 6.577 10 N -0.613 5.613 11 C 0.110 3.890 12 C -0.129 4.129 13 C 0.128 3.872 14 H 0.151 0.849 15 N -0.273 5.273 16 C -0.022 4.022 17 C -0.030 4.030 18 C 0.235 3.765 19 N -0.737 5.737 20 C -0.243 4.243 21 H 0.082 0.918 22 C -0.074 4.074 23 N -0.970 5.970 24 Si 0.976 3.024 25 H -0.283 1.283 26 H -0.298 1.298 27 H -0.270 1.270 28 N -0.295 5.295 29 N -0.100 5.100 30 C 0.097 3.903 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.193 0.807 35 H 0.153 0.847 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.121 0.879 40 H 0.214 0.786 41 H 0.030 0.970 42 H 0.060 0.940 43 H 0.372 0.628 44 H 0.251 0.749 45 H 0.084 0.916 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.585 0.144 9.120 26.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.015 4.015 3 N -0.134 5.134 4 H 0.273 0.727 5 C -0.137 4.137 6 C -0.220 4.220 7 C -0.280 4.280 8 C 0.402 3.598 9 O -0.459 6.459 10 N -0.347 5.347 11 C -0.012 4.012 12 C -0.168 4.168 13 C 0.027 3.973 14 H 0.169 0.831 15 N -0.067 5.067 16 C -0.173 4.173 17 C -0.168 4.168 18 C 0.107 3.893 19 N -0.380 5.380 20 C -0.375 4.375 21 H 0.100 0.900 22 C -0.266 4.266 23 N -0.621 5.621 24 Si 0.805 3.195 25 H -0.210 1.210 26 H -0.225 1.225 27 H -0.194 1.194 28 N -0.162 5.162 29 N -0.078 5.078 30 C -0.027 4.027 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.100 0.900 34 H 0.210 0.790 35 H 0.170 0.830 36 H 0.112 0.888 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.139 0.861 40 H 0.231 0.769 41 H 0.048 0.952 42 H 0.077 0.923 43 H 0.203 0.797 44 H 0.059 0.941 45 H 0.102 0.898 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -24.549 -0.767 9.920 26.489 hybrid contribution 0.455 1.678 -0.948 1.981 sum -24.094 0.911 8.972 25.727 Atomic orbital electron populations 1.20583 0.85908 1.04581 1.03948 1.20595 0.94507 0.85835 1.00564 1.41652 1.05826 1.08980 1.56953 0.72729 1.22250 0.86492 0.96658 1.08267 1.22642 0.95725 0.94827 1.08795 1.20106 0.94317 0.91581 1.21969 1.17177 0.83827 0.84114 0.74698 1.90712 1.17489 1.84484 1.53214 1.48045 1.05669 1.07422 1.73561 1.22348 0.97685 0.78178 1.02946 1.23254 0.91043 0.99835 1.02646 1.22970 0.80242 0.97394 0.96737 0.83127 1.47384 1.13690 1.30608 1.15023 1.23515 0.99918 1.03972 0.89903 1.22209 0.94386 1.00697 0.99534 1.18963 0.92005 0.89141 0.89198 1.42479 1.51983 1.34056 1.09509 1.19672 1.17839 1.08877 0.91103 0.89973 1.25580 1.02216 0.99982 0.98864 1.69843 1.44150 1.27221 1.20836 0.85108 0.77606 0.78401 0.78427 1.21002 1.22520 1.19437 1.75045 1.22446 1.17809 1.00862 1.78184 0.92112 1.16375 1.21170 1.22587 0.80582 0.95005 1.04520 0.89719 0.89186 0.90035 0.78966 0.82957 0.88792 0.89658 0.89904 0.86092 0.76932 0.95241 0.92259 0.79663 0.94074 0.89799 0.88089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.32 9.94 71.24 0.71 -0.61 16 2 C 0.11 1.88 7.17 41.78 0.30 2.18 16 3 N -0.54 -7.05 5.90 -182.72 -1.08 -8.13 16 4 H 0.43 2.61 8.96 -92.71 -0.83 1.78 16 5 C -0.01 -0.14 11.89 83.12 0.99 0.85 16 6 C -0.20 -3.87 9.40 23.62 0.22 -3.65 16 7 C -0.27 -5.89 6.22 -19.04 -0.12 -6.01 16 8 C 0.61 14.45 7.83 86.62 0.68 15.12 16 9 O -0.58 -16.42 15.03 -4.11 -0.06 -16.48 16 10 N -0.61 -11.22 3.33 -815.83 -2.71 -13.93 16 11 C 0.11 1.50 6.93 86.86 0.60 2.10 16 12 C -0.13 -1.58 6.77 31.99 0.22 -1.36 16 13 C 0.13 2.02 3.97 46.18 0.18 2.20 16 14 H 0.15 1.87 8.14 -2.39 -0.02 1.85 16 15 N -0.27 -6.86 3.36 -321.54 -1.08 -7.94 16 16 C -0.02 -0.61 10.44 83.49 0.87 0.26 16 17 C -0.03 -1.11 6.61 41.60 0.28 -0.84 16 18 C 0.23 9.76 6.82 85.63 0.58 10.34 16 19 N -0.74 -38.40 5.59 -347.16 -1.94 -40.34 16 20 C -0.24 -13.59 9.99 84.03 0.84 -12.76 16 21 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 22 C -0.07 -4.27 5.50 84.86 0.47 -3.80 16 23 N -0.97 -59.66 13.06 21.65 0.28 -59.38 16 24 Si 0.98 45.91 29.55 68.60 2.03 47.94 16 25 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 26 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 27 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 28 N -0.29 -11.81 12.41 -48.60 -0.60 -12.41 16 29 N -0.10 -3.33 13.17 37.02 0.49 -2.84 16 30 C 0.10 1.58 4.62 86.73 0.40 1.98 16 31 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.08 1.56 6.36 -2.39 -0.02 1.55 16 34 H 0.19 2.19 8.06 -2.91 -0.02 2.17 16 35 H 0.15 2.86 4.83 -2.91 -0.01 2.85 16 36 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 37 H 0.09 1.29 7.99 -2.39 -0.02 1.27 16 38 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.21 4.67 7.06 -2.91 -0.02 4.65 16 41 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.06 2.20 8.14 -2.39 -0.02 2.19 16 43 H 0.37 21.07 7.66 -92.71 -0.71 20.36 16 44 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 45 H 0.08 1.51 4.89 -2.39 -0.01 1.49 16 46 H 0.10 1.52 6.85 -2.39 -0.02 1.50 16 Total: -1.00 -80.28 380.77 2.05 -78.23 By element: Atomic # 1 Polarization: 29.76 SS G_CDS: -0.49 Total: 29.27 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: 7.22 Total: 6.02 kcal Atomic # 7 Polarization: -138.33 SS G_CDS: -6.65 Total: -144.97 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.06 Total: -16.48 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -80.28 2.05 -78.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098651976.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.328 kcal (2) G-P(sol) polarization free energy of solvation -80.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds