Wall clock time and date at job start Wed Apr 1 2020 03:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34486 * 126.83239 * 2 1 4 4 N 1.36450 * 108.85611 * 180.02562 * 3 2 1 5 5 H 0.97001 * 124.84497 * 179.97438 * 4 3 2 6 6 C 1.34657 * 110.29740 * 359.72669 * 4 3 2 7 7 C 1.36771 * 108.39595 * 0.44220 * 6 4 3 8 8 C 1.47266 * 126.93928 * 179.83761 * 7 6 4 9 9 O 1.21621 * 119.99958 * 179.69027 * 8 7 6 10 10 N 1.34780 * 119.99993 * 359.68723 * 8 7 6 11 11 C 1.47024 * 125.64890 * 0.04222 * 10 8 7 12 12 C 1.54319 * 107.26898 * 181.02238 * 11 10 8 13 13 C 1.55158 * 102.94516 * 22.19557 * 12 11 10 14 14 H 1.09001 * 111.03719 * 82.58248 * 13 12 11 15 15 N 1.46492 * 111.00704 * 206.42401 * 13 12 11 16 16 C 1.35317 * 125.86956 * 78.66111 * 15 13 12 17 17 C 1.35349 * 106.17446 * 179.97438 * 16 15 13 18 18 C 1.50703 * 126.75129 * 179.97438 * 17 16 15 19 19 N 1.46499 * 109.47470 * 95.04643 * 18 17 16 20 20 C 1.36932 * 120.00287 * 179.97438 * 19 18 17 21 21 H 1.08004 * 119.99540 * 0.02562 * 20 19 18 22 22 C 1.38807 * 120.00200 * 180.02562 * 20 19 18 23 23 N 1.31620 * 119.99983 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00160 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47087 * 59.99999 * 24 22 20 26 26 H 1.48498 * 109.47093 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47051 * 300.00152 * 24 22 20 28 28 N 1.33777 * 106.49799 * 0.02562 * 17 16 15 29 29 N 1.28634 * 108.88349 * 359.97438 * 28 17 16 30 30 C 1.47426 * 125.64416 * 180.02562 * 10 8 7 31 31 H 1.09000 * 109.46835 * 269.95441 * 1 2 3 32 32 H 1.08992 * 109.46877 * 29.96045 * 1 2 3 33 33 H 1.08999 * 109.46409 * 149.96097 * 1 2 3 34 34 H 1.08002 * 125.57061 * 0.05282 * 3 2 1 35 35 H 1.07998 * 125.80043 * 180.30979 * 6 4 3 36 36 H 1.08996 * 109.88207 * 300.44118 * 11 10 8 37 37 H 1.08996 * 109.87789 * 61.60523 * 11 10 8 38 38 H 1.09001 * 110.72299 * 263.82947 * 12 11 10 39 39 H 1.09004 * 110.72030 * 140.55370 * 12 11 10 40 40 H 1.07994 * 126.91360 * 359.93700 * 16 15 13 41 41 H 1.09001 * 109.47240 * 215.04786 * 18 17 16 42 42 H 1.09006 * 109.46803 * 335.04653 * 18 17 16 43 43 H 0.97002 * 119.99348 * 0.02562 * 19 18 17 44 44 H 0.96997 * 120.00045 * 179.97438 * 23 22 20 45 45 H 1.08997 * 110.36695 * 37.06669 * 30 10 8 46 46 H 1.08997 * 110.36054 * 274.74248 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3133 1.0764 0.0000 4 7 3.6112 0.6553 -0.0006 5 1 4.3840 1.2415 -0.0011 6 6 3.6657 -0.6902 0.0051 7 6 2.3865 -1.1740 -0.0005 8 6 1.9751 -2.5880 -0.0007 9 8 0.7939 -2.8777 -0.0004 10 7 2.9076 -3.5612 -0.0013 11 6 4.3631 -3.3533 -0.0009 12 6 5.0249 -4.7470 -0.0281 13 6 3.9079 -5.6509 -0.6134 14 1 3.8887 -5.5941 -1.7018 15 7 4.0651 -7.0368 -0.1654 16 6 3.7091 -7.5237 1.0459 17 6 4.0288 -8.8388 1.0324 18 6 3.8289 -9.8270 2.1525 19 7 2.5606 -10.5342 1.9592 20 6 2.1641 -11.4875 2.8588 21 1 2.7864 -11.7176 3.7111 22 6 0.9627 -12.1580 2.6754 23 7 0.2047 -11.8779 1.6365 24 14 0.4216 -13.4579 3.9030 25 1 0.2876 -12.8431 5.2481 26 1 -0.8873 -14.0203 3.4838 27 1 1.4340 -14.5430 3.9534 28 7 4.5583 -9.0887 -0.1704 29 7 4.5654 -8.0006 -0.8564 30 6 2.6370 -5.0104 -0.0020 31 1 -0.3633 -0.0008 1.0277 32 1 -0.3633 0.8903 -0.5132 33 1 -0.3632 -0.8897 -0.5145 34 1 1.9868 2.1059 0.0008 35 1 4.5665 -1.2859 0.0107 36 1 4.6567 -2.7861 -0.8841 37 1 4.6608 -2.8190 0.9013 38 1 5.2917 -5.0670 0.9792 39 1 5.9000 -4.7458 -0.6780 40 1 3.2608 -6.9735 1.8599 41 1 4.6488 -10.5452 2.1542 42 1 3.8080 -9.2972 3.1049 43 1 2.0020 -10.3278 1.1936 44 1 -0.6347 -12.3467 1.5081 45 1 1.7659 -5.2333 -0.6180 46 1 2.4844 -5.3682 1.0162 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098779931.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:16 Heat of formation + Delta-G solvation = 145.308282 kcal Electronic energy + Delta-G solvation = -28995.985629 eV Core-core repulsion = 24924.929687 eV Total energy + Delta-G solvation = -4071.055943 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.04217 -41.70773 -39.99887 -37.80066 -35.05234 -34.05312 -32.80511 -31.93003 -31.25921 -30.61347 -29.87493 -28.67585 -26.91966 -25.95230 -25.02193 -23.23845 -22.80480 -22.15980 -21.01028 -20.62847 -20.44634 -19.23429 -18.27200 -17.69998 -17.03732 -16.92677 -16.01322 -15.70889 -15.57064 -15.00953 -14.71221 -14.52378 -14.41275 -14.29309 -14.16197 -13.64525 -13.56373 -13.20398 -13.17465 -13.00753 -12.92736 -12.74890 -12.61432 -12.25342 -12.12503 -11.96288 -11.69451 -11.49818 -11.23083 -10.86397 -10.75759 -10.46923 -10.15212 -10.08805 -9.85859 -9.68087 -9.19940 -8.98778 -8.85586 -8.81595 -8.71412 -6.87404 -5.68901 -2.98868 1.32397 1.77753 1.98637 2.07340 2.63375 2.85804 2.91763 3.20356 3.50129 3.54022 3.55636 3.73052 3.83870 4.23230 4.30720 4.43268 4.46694 4.55338 4.65794 4.67107 4.79415 4.86530 4.92773 5.12579 5.14339 5.22193 5.29477 5.36192 5.38206 5.40735 5.52962 5.59927 5.66805 5.68818 5.81925 5.86185 5.96039 6.21561 6.39054 6.41470 6.45910 6.67220 6.75019 6.80599 6.95050 7.11374 7.74784 7.96641 8.48119 8.83046 9.59712 10.15415 10.51259 11.53709 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.015478 B = 0.002100 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.590314 B =13331.812410 C =14602.045765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.106 4.106 3 C -0.026 4.026 4 N -0.550 5.550 5 H 0.418 0.582 6 C 0.035 3.965 7 C -0.224 4.224 8 C 0.607 3.393 9 O -0.530 6.530 10 N -0.618 5.618 11 C 0.098 3.902 12 C -0.141 4.141 13 C 0.135 3.865 14 H 0.130 0.870 15 N -0.292 5.292 16 C -0.044 4.044 17 C -0.001 4.001 18 C 0.232 3.768 19 N -0.726 5.726 20 C -0.241 4.241 21 H 0.073 0.927 22 C -0.013 4.013 23 N -0.931 5.931 24 Si 0.910 3.090 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.285 1.285 28 N -0.251 5.251 29 N -0.092 5.092 30 C 0.102 3.898 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.170 0.830 35 H 0.182 0.818 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.188 0.812 41 H 0.039 0.961 42 H 0.037 0.963 43 H 0.386 0.614 44 H 0.256 0.744 45 H 0.098 0.902 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.695 32.884 -4.400 35.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 C -0.154 4.154 4 N -0.144 5.144 5 H 0.255 0.745 6 C -0.101 4.101 7 C -0.235 4.235 8 C 0.399 3.601 9 O -0.406 6.406 10 N -0.354 5.354 11 C -0.026 4.026 12 C -0.180 4.180 13 C 0.031 3.969 14 H 0.147 0.853 15 N -0.086 5.086 16 C -0.194 4.194 17 C -0.139 4.139 18 C 0.103 3.897 19 N -0.370 5.370 20 C -0.372 4.372 21 H 0.090 0.910 22 C -0.209 4.209 23 N -0.580 5.580 24 Si 0.741 3.259 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.212 1.212 28 N -0.119 5.119 29 N -0.071 5.071 30 C -0.022 4.022 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.187 0.813 35 H 0.198 0.802 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.110 0.890 39 H 0.118 0.882 40 H 0.205 0.795 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.219 0.781 44 H 0.066 0.934 45 H 0.116 0.884 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 11.674 32.386 -5.626 34.883 hybrid contribution -0.530 0.065 1.346 1.448 sum 11.145 32.451 -4.280 34.577 Atomic orbital electron populations 1.20224 0.89128 1.02744 1.02206 1.20582 0.95761 0.90145 1.04726 1.21626 0.82397 0.99314 1.12032 1.41562 1.08388 1.06760 1.57643 0.74541 1.22644 0.99086 0.83922 1.04453 1.20205 0.92868 0.92170 1.18249 1.17062 0.84215 0.83307 0.75547 1.90809 1.16520 1.83181 1.50107 1.48110 1.06260 1.05585 1.75472 1.22339 0.80520 0.97360 1.02352 1.23142 0.98051 0.93111 1.03717 1.22586 0.96428 0.76094 1.01790 0.85263 1.47015 1.41500 1.09333 1.10736 1.23321 1.08231 0.96522 0.91335 1.22471 1.01761 0.93642 0.96022 1.18955 0.90961 0.90174 0.89580 1.42296 1.19301 1.44898 1.30550 1.19171 1.02372 1.12378 1.03264 0.90951 1.24767 0.97521 1.00385 0.98248 1.69671 1.13841 1.44948 1.29493 0.86231 0.77640 0.81605 0.80463 1.21251 1.21745 1.21208 1.75110 1.16909 1.16080 1.03767 1.78288 1.17270 0.91016 1.20505 1.22433 0.96882 0.80057 1.02781 0.91622 0.92237 0.90234 0.81296 0.80161 0.90196 0.90096 0.88954 0.88201 0.79527 0.94320 0.94498 0.78066 0.93441 0.88374 0.89619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.77 9.98 36.01 0.36 -0.41 16 2 C -0.11 -0.95 6.35 -102.54 -0.65 -1.60 16 3 C -0.03 -0.15 11.82 -16.82 -0.20 -0.35 16 4 N -0.55 -2.12 5.90 -12.85 -0.08 -2.20 16 5 H 0.42 0.13 8.96 -40.82 -0.37 -0.24 16 6 C 0.04 0.19 10.42 -16.84 -0.18 0.01 16 7 C -0.22 -2.09 6.26 -103.35 -0.65 -2.74 16 8 C 0.61 7.11 7.84 -12.59 -0.10 7.01 16 9 O -0.53 -8.33 15.58 5.26 0.08 -8.25 16 10 N -0.62 -5.53 3.33 -171.86 -0.57 -6.10 16 11 C 0.10 0.46 5.00 -3.07 -0.02 0.45 16 12 C -0.14 -0.80 6.64 -24.90 -0.17 -0.97 16 13 C 0.14 1.24 4.08 -65.79 -0.27 0.97 16 14 H 0.13 1.08 8.14 -51.93 -0.42 0.66 16 15 N -0.29 -4.00 3.37 -52.69 -0.18 -4.18 16 16 C -0.04 -0.66 10.59 -17.04 -0.18 -0.84 16 17 C 0.00 -0.03 6.62 -82.77 -0.55 -0.57 16 18 C 0.23 4.93 6.82 -5.19 -0.04 4.89 16 19 N -0.73 -19.30 5.59 -61.08 -0.34 -19.64 16 20 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 21 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 22 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 23 N -0.93 -29.23 13.06 55.49 0.72 -28.51 16 24 Si 0.91 22.89 29.55 -169.99 -5.02 17.86 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 28 N -0.25 -5.11 12.41 33.29 0.41 -4.69 16 29 N -0.09 -1.61 13.16 60.35 0.79 -0.81 16 30 C 0.10 1.03 6.34 -2.54 -0.02 1.02 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.90 6.85 -51.93 -0.36 0.54 16 34 H 0.17 0.50 8.06 -52.49 -0.42 0.07 16 35 H 0.18 0.41 4.42 -52.49 -0.23 0.18 16 36 H 0.08 0.23 6.89 -51.93 -0.36 -0.13 16 37 H 0.08 0.26 7.02 -51.93 -0.36 -0.10 16 38 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.19 2.26 7.02 -52.49 -0.37 1.89 16 41 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.39 11.10 7.66 -40.82 -0.31 10.78 16 44 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 45 H 0.10 1.15 8.04 -51.93 -0.42 0.74 16 46 H 0.09 0.89 6.39 -51.93 -0.33 0.56 16 LS Contribution 381.95 15.07 5.76 5.76 Total: -1.00 -39.41 381.95 -7.34 -46.76 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -6.03 Total: 4.66 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -2.89 Total: -0.66 kcal Atomic # 7 Polarization: -66.89 SS G_CDS: 0.77 Total: -66.13 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: 0.08 Total: -8.25 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -39.41 -7.34 -46.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098779931.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.064 kcal (2) G-P(sol) polarization free energy of solvation -39.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds