Wall clock time and date at job start Wed Apr 1 2020 03:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34486 * 126.83239 * 2 1 4 4 N 1.36450 * 108.85611 * 180.02562 * 3 2 1 5 5 H 0.97001 * 124.84497 * 179.97438 * 4 3 2 6 6 C 1.34657 * 110.29740 * 359.72669 * 4 3 2 7 7 C 1.36771 * 108.39595 * 0.44220 * 6 4 3 8 8 C 1.47266 * 126.93928 * 179.83761 * 7 6 4 9 9 O 1.21621 * 119.99958 * 179.69027 * 8 7 6 10 10 N 1.34780 * 119.99993 * 359.68723 * 8 7 6 11 11 C 1.47024 * 125.64890 * 0.04222 * 10 8 7 12 12 C 1.54319 * 107.26898 * 181.02238 * 11 10 8 13 13 C 1.55158 * 102.94516 * 22.19557 * 12 11 10 14 14 H 1.09001 * 111.03719 * 82.58248 * 13 12 11 15 15 N 1.46492 * 111.00704 * 206.42401 * 13 12 11 16 16 C 1.35317 * 125.86956 * 78.66111 * 15 13 12 17 17 C 1.35349 * 106.17446 * 179.97438 * 16 15 13 18 18 C 1.50703 * 126.75129 * 179.97438 * 17 16 15 19 19 N 1.46499 * 109.47470 * 95.04643 * 18 17 16 20 20 C 1.36932 * 120.00287 * 179.97438 * 19 18 17 21 21 H 1.08004 * 119.99540 * 0.02562 * 20 19 18 22 22 C 1.38807 * 120.00200 * 180.02562 * 20 19 18 23 23 N 1.31620 * 119.99983 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00160 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47087 * 59.99999 * 24 22 20 26 26 H 1.48498 * 109.47093 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47051 * 300.00152 * 24 22 20 28 28 N 1.33777 * 106.49799 * 0.02562 * 17 16 15 29 29 N 1.28634 * 108.88349 * 359.97438 * 28 17 16 30 30 C 1.47426 * 125.64416 * 180.02562 * 10 8 7 31 31 H 1.09000 * 109.46835 * 269.95441 * 1 2 3 32 32 H 1.08992 * 109.46877 * 29.96045 * 1 2 3 33 33 H 1.08999 * 109.46409 * 149.96097 * 1 2 3 34 34 H 1.08002 * 125.57061 * 0.05282 * 3 2 1 35 35 H 1.07998 * 125.80043 * 180.30979 * 6 4 3 36 36 H 1.08996 * 109.88207 * 300.44118 * 11 10 8 37 37 H 1.08996 * 109.87789 * 61.60523 * 11 10 8 38 38 H 1.09001 * 110.72299 * 263.82947 * 12 11 10 39 39 H 1.09004 * 110.72030 * 140.55370 * 12 11 10 40 40 H 1.07994 * 126.91360 * 359.93700 * 16 15 13 41 41 H 1.09001 * 109.47240 * 215.04786 * 18 17 16 42 42 H 1.09006 * 109.46803 * 335.04653 * 18 17 16 43 43 H 0.97002 * 119.99348 * 0.02562 * 19 18 17 44 44 H 0.96997 * 120.00045 * 179.97438 * 23 22 20 45 45 H 1.08997 * 110.36695 * 37.06669 * 30 10 8 46 46 H 1.08997 * 110.36054 * 274.74248 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3133 1.0764 0.0000 4 7 3.6112 0.6553 -0.0006 5 1 4.3840 1.2415 -0.0011 6 6 3.6657 -0.6902 0.0051 7 6 2.3865 -1.1740 -0.0005 8 6 1.9751 -2.5880 -0.0007 9 8 0.7939 -2.8777 -0.0004 10 7 2.9076 -3.5612 -0.0013 11 6 4.3631 -3.3533 -0.0009 12 6 5.0249 -4.7470 -0.0281 13 6 3.9079 -5.6509 -0.6134 14 1 3.8887 -5.5941 -1.7018 15 7 4.0651 -7.0368 -0.1654 16 6 3.7091 -7.5237 1.0459 17 6 4.0288 -8.8388 1.0324 18 6 3.8289 -9.8270 2.1525 19 7 2.5606 -10.5342 1.9592 20 6 2.1641 -11.4875 2.8588 21 1 2.7864 -11.7176 3.7111 22 6 0.9627 -12.1580 2.6754 23 7 0.2047 -11.8779 1.6365 24 14 0.4216 -13.4579 3.9030 25 1 0.2876 -12.8431 5.2481 26 1 -0.8873 -14.0203 3.4838 27 1 1.4340 -14.5430 3.9534 28 7 4.5583 -9.0887 -0.1704 29 7 4.5654 -8.0006 -0.8564 30 6 2.6370 -5.0104 -0.0020 31 1 -0.3633 -0.0008 1.0277 32 1 -0.3633 0.8903 -0.5132 33 1 -0.3632 -0.8897 -0.5145 34 1 1.9868 2.1059 0.0008 35 1 4.5665 -1.2859 0.0107 36 1 4.6567 -2.7861 -0.8841 37 1 4.6608 -2.8190 0.9013 38 1 5.2917 -5.0670 0.9792 39 1 5.9000 -4.7458 -0.6780 40 1 3.2608 -6.9735 1.8599 41 1 4.6488 -10.5452 2.1542 42 1 3.8080 -9.2972 3.1049 43 1 2.0020 -10.3278 1.1936 44 1 -0.6347 -12.3467 1.5081 45 1 1.7659 -5.2333 -0.6180 46 1 2.4844 -5.3682 1.0162 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098779931.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:15 Heat of formation + Delta-G solvation = 115.064510 kcal Electronic energy + Delta-G solvation = -28997.297098 eV Core-core repulsion = 24924.929687 eV Total energy + Delta-G solvation = -4072.367411 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.32456 -42.20652 -40.70031 -38.66102 -36.82536 -35.29267 -33.71133 -33.34365 -32.15298 -31.67533 -31.12850 -29.40731 -27.71961 -27.46998 -25.89106 -24.77919 -24.10763 -22.78573 -22.26140 -21.68388 -21.06579 -19.81271 -19.37291 -18.74331 -18.47103 -17.62831 -17.18636 -16.64093 -16.57420 -16.27247 -16.01539 -15.55633 -15.41487 -15.13373 -15.00186 -14.77904 -14.74082 -14.32136 -14.12606 -13.94054 -13.85846 -13.60048 -13.52543 -13.33087 -13.14449 -12.91897 -12.78800 -12.68635 -12.57264 -12.27607 -12.13147 -12.06801 -11.88557 -11.82783 -11.05713 -10.98961 -10.93561 -10.24728 -9.91228 -9.52465 -9.18173 -9.02008 -7.92679 -5.23503 0.54429 0.74839 1.12259 1.43399 1.49103 1.50772 1.53918 1.60037 1.93516 2.47844 2.49104 2.59967 2.94267 3.22303 3.36073 3.43179 3.63734 3.83161 3.88768 3.93367 4.02028 4.08963 4.19541 4.23652 4.25769 4.35651 4.42332 4.51519 4.56582 4.60052 4.66068 4.83347 4.84242 4.87433 4.90327 4.93211 5.06213 5.11967 5.17932 5.22039 5.31342 5.50967 5.62881 5.81004 5.96721 6.26479 6.42090 6.71130 7.18771 7.33049 7.48226 8.04763 8.30268 9.31125 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.015478 B = 0.002100 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.590314 B =13331.812410 C =14602.045765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.153 4.153 3 C -0.008 4.008 4 N -0.532 5.532 5 H 0.440 0.560 6 C 0.065 3.935 7 C -0.268 4.268 8 C 0.598 3.402 9 O -0.591 6.591 10 N -0.614 5.614 11 C 0.094 3.906 12 C -0.127 4.127 13 C 0.128 3.872 14 H 0.139 0.861 15 N -0.273 5.273 16 C -0.022 4.022 17 C -0.031 4.031 18 C 0.235 3.765 19 N -0.740 5.740 20 C -0.243 4.243 21 H 0.086 0.914 22 C -0.081 4.081 23 N -0.974 5.974 24 Si 0.981 3.019 25 H -0.272 1.272 26 H -0.299 1.299 27 H -0.277 1.277 28 N -0.295 5.295 29 N -0.103 5.103 30 C 0.102 3.898 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.044 0.956 34 H 0.199 0.801 35 H 0.218 0.782 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.094 0.906 39 H 0.125 0.875 40 H 0.217 0.783 41 H 0.032 0.968 42 H 0.063 0.937 43 H 0.370 0.630 44 H 0.250 0.750 45 H 0.070 0.930 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.837 35.919 -3.406 39.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.159 4.159 3 C -0.136 4.136 4 N -0.127 5.127 5 H 0.281 0.719 6 C -0.073 4.073 7 C -0.279 4.279 8 C 0.392 3.608 9 O -0.472 6.472 10 N -0.349 5.349 11 C -0.027 4.027 12 C -0.166 4.166 13 C 0.026 3.974 14 H 0.157 0.843 15 N -0.067 5.067 16 C -0.173 4.173 17 C -0.170 4.170 18 C 0.107 3.893 19 N -0.383 5.383 20 C -0.375 4.375 21 H 0.104 0.896 22 C -0.273 4.273 23 N -0.625 5.625 24 Si 0.809 3.191 25 H -0.198 1.198 26 H -0.225 1.225 27 H -0.203 1.203 28 N -0.161 5.161 29 N -0.081 5.081 30 C -0.023 4.023 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.063 0.937 34 H 0.216 0.784 35 H 0.234 0.766 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.113 0.887 39 H 0.143 0.857 40 H 0.234 0.766 41 H 0.050 0.950 42 H 0.080 0.920 43 H 0.201 0.799 44 H 0.059 0.941 45 H 0.088 0.912 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 14.942 35.477 -4.627 38.772 hybrid contribution -1.423 -0.703 0.993 1.872 sum 13.520 34.773 -3.633 37.486 Atomic orbital electron populations 1.20107 0.90392 1.01961 1.01404 1.20785 0.95781 0.91638 1.07674 1.21955 0.82574 0.99692 1.09414 1.41625 1.08663 1.06664 1.55764 0.71922 1.23018 0.98539 0.84574 1.01189 1.20193 0.94948 0.90829 1.21899 1.17593 0.83773 0.84729 0.74733 1.90768 1.19107 1.84156 1.53202 1.48107 1.08000 1.04338 1.74415 1.22702 0.77441 0.97437 1.05164 1.23184 0.97306 0.92051 1.04057 1.22978 0.97763 0.74090 1.02568 0.84285 1.47313 1.39262 1.10325 1.09823 1.23605 1.06182 0.95352 0.92179 1.22252 1.04167 0.94844 0.95704 1.18994 0.88259 0.90428 0.91624 1.42525 1.20893 1.45228 1.29660 1.19674 1.02262 1.12040 1.03500 0.89582 1.25690 0.97997 1.03164 1.00412 1.69860 1.14212 1.46591 1.31840 0.85102 0.76687 0.78870 0.78429 1.19756 1.22538 1.20259 1.75041 1.18671 1.17787 1.04642 1.78177 1.18160 0.91184 1.20585 1.22285 0.96493 0.81489 1.02003 0.92531 0.90224 0.93701 0.78403 0.76618 0.87192 0.87330 0.88708 0.85711 0.76596 0.94969 0.91969 0.79937 0.94126 0.91163 0.90065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.57 9.98 71.24 0.71 -0.86 16 2 C -0.15 -2.65 6.35 -18.51 -0.12 -2.76 16 3 C -0.01 -0.07 11.82 83.12 0.98 0.91 16 4 N -0.53 -1.73 5.90 -194.55 -1.15 -2.88 16 5 H 0.44 -2.13 8.96 -92.71 -0.83 -2.96 16 6 C 0.07 0.43 10.42 83.92 0.87 1.31 16 7 C -0.27 -4.68 6.26 -19.04 -0.12 -4.80 16 8 C 0.60 14.28 7.84 86.62 0.68 14.96 16 9 O -0.59 -20.31 15.58 -4.10 -0.06 -20.38 16 10 N -0.61 -10.23 3.33 -815.89 -2.71 -12.95 16 11 C 0.09 0.49 5.00 86.73 0.43 0.93 16 12 C -0.13 -0.94 6.64 31.78 0.21 -0.73 16 13 C 0.13 2.12 4.08 46.38 0.19 2.31 16 14 H 0.14 2.09 8.14 -2.39 -0.02 2.07 16 15 N -0.27 -7.19 3.37 -320.62 -1.08 -8.28 16 16 C -0.02 -0.63 10.59 83.49 0.88 0.25 16 17 C -0.03 -1.20 6.62 41.60 0.28 -0.92 16 18 C 0.23 9.96 6.82 85.63 0.58 10.54 16 19 N -0.74 -40.04 5.59 -347.17 -1.94 -41.99 16 20 C -0.24 -14.00 9.99 84.03 0.84 -13.16 16 21 H 0.09 4.60 7.83 -2.91 -0.02 4.58 16 22 C -0.08 -4.83 5.50 84.86 0.47 -4.36 16 23 N -0.97 -62.87 13.06 21.65 0.28 -62.59 16 24 Si 0.98 47.52 29.55 68.60 2.03 49.54 16 25 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 26 H -0.30 -14.70 7.11 99.48 0.71 -14.00 16 27 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 28 N -0.29 -12.14 12.41 -48.60 -0.60 -12.74 16 29 N -0.10 -3.54 13.16 37.02 0.49 -3.05 16 30 C 0.10 2.04 6.34 86.85 0.55 2.59 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.04 1.16 6.85 -2.39 -0.02 1.14 16 34 H 0.20 0.38 8.06 -2.91 -0.02 0.36 16 35 H 0.22 -0.35 4.42 -2.91 -0.01 -0.36 16 36 H 0.11 0.00 6.89 -2.39 -0.02 -0.01 16 37 H 0.11 0.08 7.02 -2.39 -0.02 0.07 16 38 H 0.09 0.74 8.14 -2.39 -0.02 0.73 16 39 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.22 4.83 7.02 -2.91 -0.02 4.81 16 41 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 43 H 0.37 22.01 7.66 -92.71 -0.71 21.30 16 44 H 0.25 15.66 8.31 -92.71 -0.77 14.88 16 45 H 0.07 1.79 8.04 -2.39 -0.02 1.77 16 46 H 0.08 1.68 6.39 -2.39 -0.02 1.66 16 Total: -1.00 -92.87 381.95 2.20 -90.67 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -0.49 Total: 18.42 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: 7.44 Total: 6.21 kcal Atomic # 7 Polarization: -137.75 SS G_CDS: -6.72 Total: -144.47 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.06 Total: -20.38 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 2.03 Total: 49.54 kcal Total: -92.87 2.20 -90.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098779931.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.737 kcal (2) G-P(sol) polarization free energy of solvation -92.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds