Wall clock time and date at job start Wed Apr 1 2020 03:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.34485 * 126.83617 * 2 1 4 4 N 1.36449 * 108.86088 * 180.26676 * 3 2 1 5 5 H 0.97000 * 124.85647 * 179.68879 * 4 3 2 6 6 C 1.34661 * 110.29340 * 359.71053 * 4 3 2 7 7 C 1.36772 * 108.39705 * 359.97438 * 6 4 3 8 8 C 1.47260 * 126.94028 * 179.97438 * 7 6 4 9 9 O 1.21626 * 119.99842 * 180.02562 * 8 7 6 10 10 N 1.34777 * 120.00380 * 0.02680 * 8 7 6 11 11 C 1.47022 * 125.64528 * 0.02698 * 10 8 7 12 12 C 1.54327 * 107.27336 * 178.90269 * 11 10 8 13 13 C 1.55165 * 102.94078 * 337.80587 * 12 11 10 14 14 H 1.09001 * 111.00003 * 277.43047 * 13 12 11 15 15 N 1.46496 * 111.00397 * 153.57581 * 13 12 11 16 16 C 1.35315 * 125.86708 * 274.99883 * 15 13 12 17 17 C 1.35355 * 106.17310 * 180.02562 * 16 15 13 18 18 C 1.50703 * 126.74679 * 179.97438 * 17 16 15 19 19 N 1.46496 * 109.47256 * 95.00271 * 18 17 16 20 20 C 1.36941 * 119.99838 * 179.97438 * 19 18 17 21 21 H 1.07992 * 120.00321 * 359.97438 * 20 19 18 22 22 C 1.38814 * 119.99624 * 179.97438 * 20 19 18 23 23 N 1.31620 * 120.00166 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99683 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46827 * 60.00746 * 24 22 20 26 26 H 1.48507 * 109.47077 * 180.02562 * 24 22 20 27 27 H 1.48493 * 109.47600 * 300.00591 * 24 22 20 28 28 N 1.33767 * 106.49912 * 0.02562 * 17 16 15 29 29 N 1.28642 * 108.88392 * 359.73545 * 28 17 16 30 30 C 1.47425 * 125.65136 * 179.97438 * 10 8 7 31 31 H 1.09003 * 109.47501 * 270.20390 * 1 2 3 32 32 H 1.09001 * 109.47081 * 30.20466 * 1 2 3 33 33 H 1.08999 * 109.47664 * 150.20421 * 1 2 3 34 34 H 1.08006 * 125.57102 * 359.97438 * 3 2 1 35 35 H 1.08003 * 125.80187 * 180.02562 * 6 4 3 36 36 H 1.08997 * 109.88723 * 59.48678 * 11 10 8 37 37 H 1.08998 * 109.88661 * 298.31659 * 11 10 8 38 38 H 1.08993 * 110.72079 * 96.16743 * 12 11 10 39 39 H 1.09002 * 110.72173 * 219.44580 * 12 11 10 40 40 H 1.07997 * 126.91406 * 0.02562 * 16 15 13 41 41 H 1.09003 * 109.46596 * 214.99556 * 18 17 16 42 42 H 1.08999 * 109.47042 * 334.99264 * 18 17 16 43 43 H 0.97001 * 120.00200 * 359.97438 * 19 18 17 44 44 H 0.97003 * 119.99875 * 180.02562 * 23 22 20 45 45 H 1.08997 * 110.36855 * 323.00479 * 30 10 8 46 46 H 1.08997 * 110.36655 * 85.33352 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6553 -0.0060 5 1 4.3840 1.2413 -0.0116 6 6 3.6656 -0.6902 -0.0036 7 6 2.3863 -1.1740 0.0047 8 6 1.9749 -2.5880 0.0094 9 8 0.7936 -2.8776 0.0164 10 7 2.9072 -3.5612 0.0061 11 6 4.3627 -3.3534 -0.0017 12 6 5.0247 -4.7472 0.0252 13 6 3.9103 -5.6498 0.6176 14 1 3.8967 -5.5902 1.7059 15 7 4.0654 -7.0366 0.1716 16 6 3.5966 -7.5537 -0.9876 17 6 3.9609 -8.8573 -0.9936 18 6 3.6732 -9.8690 -2.0729 19 7 4.8169 -9.9488 -2.9848 20 6 4.7842 -10.8080 -4.0506 21 1 3.9154 -11.4272 -4.2186 22 6 5.8677 -10.8832 -4.9150 23 7 6.9267 -10.1290 -4.7100 24 14 5.8233 -12.0558 -6.3684 25 1 4.6827 -11.7053 -7.2525 26 1 7.0929 -11.9472 -7.1311 27 1 5.6592 -13.4474 -5.8769 28 7 4.6255 -9.0712 0.1474 29 7 4.6746 -7.9715 0.8131 30 6 2.6366 -5.0104 0.0106 31 1 -0.3634 0.0037 1.0277 32 1 -0.3633 0.8881 -0.5170 33 1 -0.3634 -0.8918 -0.5106 34 1 1.9867 2.1059 -0.0004 35 1 4.5663 -1.2861 -0.0068 36 1 4.6606 -2.7845 0.8790 37 1 4.6564 -2.8209 -0.9063 38 1 5.2866 -5.0691 -0.9826 39 1 5.9029 -4.7447 0.6709 40 1 3.0430 -7.0315 -1.7539 41 1 3.5015 -10.8452 -1.6193 42 1 2.7859 -9.5653 -2.6283 43 1 5.5974 -9.3929 -2.8338 44 1 7.6837 -10.1813 -5.3143 45 1 1.7683 -5.2323 0.6309 46 1 2.4794 -5.3701 -1.0062 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098779932.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:19 Heat of formation + Delta-G solvation = 115.996552 kcal Electronic energy + Delta-G solvation = -29001.807559 eV Core-core repulsion = 24929.480565 eV Total energy + Delta-G solvation = -4072.326995 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.32721 -42.20658 -40.70184 -38.65063 -36.82487 -35.29197 -33.70756 -33.33882 -32.16071 -31.69108 -31.12277 -29.40371 -27.72303 -27.45762 -25.88288 -24.77137 -24.12424 -22.83988 -22.21924 -21.67535 -21.05571 -19.80733 -19.39200 -18.75945 -18.47350 -17.64037 -17.19146 -16.69580 -16.51703 -16.26972 -16.02126 -15.57217 -15.43723 -15.12966 -14.99013 -14.77413 -14.69921 -14.33460 -14.11086 -13.94375 -13.87713 -13.59251 -13.52522 -13.33212 -13.07277 -12.94791 -12.79150 -12.69020 -12.57333 -12.27326 -12.12390 -12.10095 -11.88344 -11.82562 -11.04187 -10.99419 -10.93778 -10.24558 -9.91043 -9.52811 -9.18113 -9.01061 -7.92290 -5.22523 0.54902 0.74236 1.11510 1.43964 1.49398 1.51574 1.54575 1.60538 1.93050 2.46933 2.49670 2.60432 2.90919 3.23427 3.35898 3.43254 3.63887 3.80764 3.88361 3.92021 4.00935 4.06888 4.19377 4.23845 4.25562 4.36739 4.41845 4.50949 4.55859 4.59321 4.66119 4.82296 4.83184 4.87664 4.90812 4.91987 5.06115 5.11773 5.16966 5.22869 5.31984 5.51948 5.62624 5.81830 5.96933 6.27445 6.40526 6.69666 7.17993 7.34448 7.47884 8.05174 8.31729 9.31353 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.015750 B = 0.002034 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.320351 B =13759.440068 C =14275.589633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.151 4.151 3 C -0.010 4.010 4 N -0.533 5.533 5 H 0.439 0.561 6 C 0.061 3.939 7 C -0.268 4.268 8 C 0.601 3.399 9 O -0.586 6.586 10 N -0.615 5.615 11 C 0.097 3.903 12 C -0.135 4.135 13 C 0.129 3.871 14 H 0.145 0.855 15 N -0.273 5.273 16 C -0.023 4.023 17 C -0.031 4.031 18 C 0.234 3.766 19 N -0.738 5.738 20 C -0.245 4.245 21 H 0.083 0.917 22 C -0.077 4.077 23 N -0.971 5.971 24 Si 0.979 3.021 25 H -0.273 1.273 26 H -0.296 1.296 27 H -0.279 1.279 28 N -0.294 5.294 29 N -0.101 5.101 30 C 0.105 3.895 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.046 0.954 34 H 0.199 0.801 35 H 0.213 0.787 36 H 0.112 0.888 37 H 0.102 0.898 38 H 0.081 0.919 39 H 0.120 0.880 40 H 0.217 0.783 41 H 0.030 0.970 42 H 0.060 0.940 43 H 0.372 0.628 44 H 0.251 0.749 45 H 0.085 0.915 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.102 30.547 12.872 33.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.157 4.157 3 C -0.138 4.138 4 N -0.128 5.128 5 H 0.279 0.721 6 C -0.078 4.078 7 C -0.278 4.278 8 C 0.395 3.605 9 O -0.467 6.467 10 N -0.349 5.349 11 C -0.025 4.025 12 C -0.174 4.174 13 C 0.027 3.973 14 H 0.163 0.837 15 N -0.067 5.067 16 C -0.175 4.175 17 C -0.169 4.169 18 C 0.106 3.894 19 N -0.381 5.381 20 C -0.376 4.376 21 H 0.101 0.899 22 C -0.269 4.269 23 N -0.622 5.622 24 Si 0.807 3.193 25 H -0.199 1.199 26 H -0.223 1.223 27 H -0.205 1.205 28 N -0.161 5.161 29 N -0.080 5.080 30 C -0.019 4.019 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.065 0.935 34 H 0.216 0.784 35 H 0.229 0.771 36 H 0.130 0.870 37 H 0.120 0.880 38 H 0.100 0.900 39 H 0.138 0.862 40 H 0.234 0.766 41 H 0.048 0.952 42 H 0.078 0.922 43 H 0.203 0.797 44 H 0.060 0.940 45 H 0.103 0.897 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.983 30.109 14.084 33.774 hybrid contribution 0.038 -0.360 -1.624 1.664 sum -5.945 29.748 12.460 32.796 Atomic orbital electron populations 1.20103 0.90070 1.02021 1.01522 1.20792 0.95909 0.91434 1.07547 1.21983 0.82511 0.99799 1.09490 1.41643 1.08761 1.06654 1.55788 0.72051 1.23010 0.98685 0.84629 1.01440 1.20222 0.94758 0.91116 1.21716 1.17487 0.83771 0.84524 0.74707 1.90748 1.18698 1.84095 1.53194 1.48106 1.07697 1.04694 1.74417 1.22627 0.77859 0.97047 1.04943 1.23175 0.97918 0.92839 1.03460 1.22993 0.97687 0.73917 1.02678 0.83720 1.47311 1.35054 1.10876 1.13480 1.23615 1.06142 0.94696 0.92998 1.22233 1.02637 0.95742 0.96315 1.18970 0.90944 0.93321 0.86115 1.42473 1.17265 1.48877 1.29436 1.19655 1.01027 1.14926 1.02042 0.89900 1.25631 0.96288 1.02229 1.02749 1.69843 1.07113 1.44631 1.40603 0.85135 0.76542 0.78630 0.78965 1.19890 1.22270 1.20541 1.75042 1.17721 1.17364 1.06008 1.78171 1.16646 0.92007 1.21141 1.22300 0.96278 0.81098 1.02252 0.92278 0.90352 0.93482 0.78410 0.77066 0.87026 0.87990 0.90025 0.86159 0.76648 0.95181 0.92206 0.79708 0.94038 0.89667 0.89977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.43 9.97 71.23 0.71 -0.71 16 2 C -0.15 -2.53 6.35 -18.52 -0.12 -2.65 16 3 C -0.01 -0.08 11.82 83.12 0.98 0.90 16 4 N -0.53 -2.32 5.90 -194.55 -1.15 -3.46 16 5 H 0.44 -1.46 8.96 -92.71 -0.83 -2.29 16 6 C 0.06 0.47 10.42 83.92 0.87 1.35 16 7 C -0.27 -4.63 6.26 -19.04 -0.12 -4.75 16 8 C 0.60 13.59 7.84 86.61 0.68 14.27 16 9 O -0.59 -18.40 15.58 -4.11 -0.06 -18.47 16 10 N -0.61 -9.96 3.33 -815.85 -2.71 -12.67 16 11 C 0.10 0.73 5.00 86.73 0.43 1.16 16 12 C -0.14 -1.51 6.65 31.79 0.21 -1.30 16 13 C 0.13 2.12 4.12 46.39 0.19 2.31 16 14 H 0.15 1.97 8.14 -2.39 -0.02 1.95 16 15 N -0.27 -7.19 3.40 -320.57 -1.09 -8.28 16 16 C -0.02 -0.68 10.60 83.49 0.89 0.21 16 17 C -0.03 -1.19 6.62 41.60 0.28 -0.91 16 18 C 0.23 10.01 6.82 85.63 0.58 10.59 16 19 N -0.74 -39.17 5.59 -347.18 -1.94 -41.11 16 20 C -0.25 -13.92 9.99 84.03 0.84 -13.08 16 21 H 0.08 4.43 7.83 -2.91 -0.02 4.40 16 22 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 23 N -0.97 -60.61 13.06 21.65 0.28 -60.33 16 24 Si 0.98 46.58 29.55 68.60 2.03 48.61 16 25 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 26 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 27 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 28 N -0.29 -12.12 12.41 -48.60 -0.60 -12.73 16 29 N -0.10 -3.48 13.17 37.02 0.49 -2.99 16 30 C 0.11 1.86 6.27 86.86 0.54 2.40 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.05 1.12 6.86 -2.39 -0.02 1.11 16 34 H 0.20 0.42 8.06 -2.91 -0.02 0.40 16 35 H 0.21 0.14 4.42 -2.91 -0.01 0.12 16 36 H 0.11 0.21 6.87 -2.39 -0.02 0.20 16 37 H 0.10 0.45 7.03 -2.39 -0.02 0.43 16 38 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.22 4.90 6.81 -2.91 -0.02 4.88 16 41 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.37 21.41 7.66 -92.71 -0.71 20.70 16 44 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 45 H 0.08 1.71 8.04 -2.39 -0.02 1.69 16 46 H 0.08 1.50 6.24 -2.39 -0.01 1.49 16 Total: -1.00 -88.00 381.61 2.19 -85.81 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: -0.49 Total: 19.86 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: 7.44 Total: 5.76 kcal Atomic # 7 Polarization: -134.86 SS G_CDS: -6.73 Total: -141.58 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.06 Total: -18.47 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -88.00 2.19 -85.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098779932.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.810 kcal (2) G-P(sol) polarization free energy of solvation -88.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds