Wall clock time and date at job start Wed Apr 1 2020 02:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35460 * 125.56186 * 2 1 4 4 C 1.39836 * 107.86143 * 179.97438 * 3 2 1 5 5 C 1.37868 * 107.08706 * 0.02562 * 4 3 2 6 6 C 1.46679 * 126.23249 * 180.26877 * 5 4 3 7 7 O 1.21692 * 120.00004 * 175.09865 * 6 5 4 8 8 N 1.34781 * 119.99757 * 355.09064 * 6 5 4 9 9 C 1.47059 * 136.05663 * 4.99493 * 8 6 5 10 10 C 1.53757 * 87.88866 * 152.96151 * 9 8 6 11 11 N 1.46494 * 114.09026 * 139.77827 * 10 9 8 12 12 C 1.35312 * 125.87008 * 351.27428 * 11 10 9 13 13 C 1.35354 * 106.17696 * 179.90351 * 12 11 10 14 14 C 1.50698 * 126.74874 * 180.12246 * 13 12 11 15 15 N 1.46500 * 109.46743 * 95.25194 * 14 13 12 16 16 C 1.36938 * 119.99762 * 179.97438 * 15 14 13 17 17 H 1.07996 * 120.00582 * 359.97438 * 16 15 14 18 18 C 1.38815 * 119.99746 * 180.02562 * 16 15 14 19 19 N 1.31618 * 120.00095 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99836 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47367 * 59.99668 * 20 18 16 22 22 H 1.48505 * 109.47166 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47373 * 299.99715 * 20 18 16 24 24 N 1.33772 * 106.49525 * 0.35532 * 13 12 11 25 25 N 1.28632 * 108.88696 * 359.77318 * 24 13 12 26 26 C 1.47067 * 136.05560 * 185.36037 * 8 6 5 27 27 N 1.35530 * 125.56584 * 179.97438 * 2 1 3 28 28 C 1.46503 * 125.67923 * 0.02562 * 27 2 1 29 29 H 1.08994 * 109.47591 * 270.00078 * 1 2 3 30 30 H 1.08998 * 109.47078 * 30.00393 * 1 2 3 31 31 H 1.09002 * 109.46841 * 149.99978 * 1 2 3 32 32 H 1.07992 * 126.06574 * 359.97438 * 3 2 1 33 33 H 1.07998 * 126.45021 * 180.02562 * 4 3 2 34 34 H 1.09003 * 113.46858 * 267.68770 * 9 8 6 35 35 H 1.09000 * 113.47151 * 38.13068 * 9 8 6 36 36 H 1.09001 * 114.39056 * 272.67873 * 10 9 8 37 37 H 1.08005 * 126.90741 * 0.02562 * 12 11 10 38 38 H 1.09000 * 109.47241 * 215.24741 * 14 13 12 39 39 H 1.08994 * 109.47767 * 335.25306 * 14 13 12 40 40 H 0.97001 * 120.00154 * 359.97438 * 15 14 13 41 41 H 0.97002 * 119.99989 * 180.02562 * 19 18 16 42 42 H 1.09001 * 113.46427 * 321.86416 * 26 8 6 43 43 H 1.09001 * 113.46848 * 92.30278 * 26 8 6 44 44 H 1.08998 * 109.47319 * 274.86960 * 28 27 2 45 45 H 1.09004 * 109.46552 * 34.86726 * 28 27 2 46 46 H 1.09000 * 109.47258 * 154.86010 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1020 0.0000 4 6 3.6270 0.6768 0.0006 5 6 3.6122 -0.7018 0.0004 6 6 4.7860 -1.5814 0.0063 7 8 4.6428 -2.7866 0.0955 8 7 6.0232 -1.0548 -0.0871 9 6 6.5985 0.2982 -0.1174 10 6 7.8871 -0.2981 0.4726 11 7 9.1177 0.2509 -0.1021 12 6 9.1944 1.0714 -1.1753 13 6 10.5099 1.3330 -1.3569 14 6 11.1168 2.2040 -2.4265 15 7 11.3264 3.5536 -1.8964 16 6 11.8714 4.5250 -2.6930 17 1 12.1471 4.2962 -3.7118 18 6 12.0704 5.8037 -2.1906 19 7 11.7349 6.0825 -0.9488 20 14 12.8146 7.1286 -3.2770 21 1 11.9475 7.3404 -4.4638 22 1 12.9210 8.3957 -2.5099 23 1 14.1663 6.7033 -3.7212 24 7 11.1657 0.6622 -0.4033 25 7 10.3125 0.0311 0.3237 26 6 7.3912 -1.5804 -0.2100 27 7 2.2953 -1.1025 0.0005 28 6 1.8243 -2.4897 0.0006 29 1 -0.3634 0.0000 1.0276 30 1 -0.3633 0.8899 -0.5139 31 1 -0.3633 -0.8900 -0.5139 32 1 1.9544 2.1268 -0.0004 33 1 4.5024 1.3093 0.0011 34 1 6.7251 0.6936 -1.1252 35 1 6.0969 0.9984 0.5507 36 1 7.9024 -0.3486 1.5613 37 1 8.3712 1.4443 -1.7667 38 1 12.0729 1.7837 -2.7382 39 1 10.4438 2.2504 -3.2826 40 1 11.0791 3.7591 -0.9813 41 1 11.8737 6.9761 -0.5979 42 1 7.5648 -2.4808 0.3792 43 1 7.7267 -1.6803 -1.2423 44 1 1.6245 -2.8055 1.0245 45 1 0.9092 -2.5627 -0.5873 46 1 2.5885 -3.1330 -0.4356 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105157287.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:39 Heat of formation + Delta-G solvation = 185.678301 kcal Electronic energy + Delta-G solvation = -28803.748424 eV Core-core repulsion = 24734.443056 eV Total energy + Delta-G solvation = -4069.305368 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.15474 -41.93311 -40.56285 -38.22441 -35.01838 -33.77904 -33.20247 -32.24853 -31.84049 -29.98398 -29.81423 -27.40006 -26.93359 -26.41602 -25.73516 -24.16780 -22.82804 -22.03662 -21.06393 -20.73329 -20.15276 -19.41426 -18.04972 -17.52885 -17.12971 -16.84937 -16.25496 -16.09992 -15.41640 -15.21647 -14.75854 -14.64554 -14.57132 -14.03861 -13.76296 -13.66430 -13.62458 -13.47750 -13.31628 -13.20536 -13.10463 -12.96863 -12.64130 -12.46776 -12.38784 -12.26279 -11.93220 -11.58860 -11.24384 -10.91195 -10.79218 -10.61260 -10.37215 -10.12385 -9.93058 -9.73144 -9.43300 -9.14641 -8.91307 -8.85828 -8.46594 -6.91542 -5.73274 -3.03025 0.99809 1.67521 1.71960 2.23809 2.36755 2.68510 2.86098 2.98183 3.37147 3.47037 3.51469 3.52601 3.73606 4.11642 4.30054 4.35583 4.38663 4.61616 4.63276 4.65990 4.68627 4.77154 4.79852 4.94028 5.00821 5.03371 5.09436 5.14294 5.18751 5.22333 5.28205 5.38432 5.45070 5.61697 5.70558 5.76667 5.78029 6.17195 6.36354 6.40747 6.58304 6.63166 6.67125 6.76405 6.77424 7.00542 7.59468 7.71440 8.43939 8.77901 9.55762 10.11086 10.46996 11.49334 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.013986 B = 0.002093 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.538910 B =13376.808789 C =14959.285259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.047 3.953 3 C -0.205 4.205 4 C -0.134 4.134 5 C -0.057 4.057 6 C 0.630 3.370 7 O -0.542 6.542 8 N -0.635 5.635 9 C 0.093 3.907 10 C 0.112 3.888 11 N -0.292 5.292 12 C -0.046 4.046 13 C 0.000 4.000 14 C 0.232 3.768 15 N -0.725 5.725 16 C -0.241 4.241 17 H 0.073 0.927 18 C -0.013 4.013 19 N -0.932 5.932 20 Si 0.910 3.090 21 H -0.286 1.286 22 H -0.292 1.292 23 H -0.285 1.285 24 N -0.250 5.250 25 N -0.089 5.089 26 C 0.106 3.894 27 N -0.408 5.408 28 C 0.063 3.937 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.145 0.855 33 H 0.149 0.851 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.151 0.849 37 H 0.190 0.810 38 H 0.040 0.960 39 H 0.038 0.962 40 H 0.386 0.614 41 H 0.256 0.744 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.077 0.923 45 H 0.082 0.918 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.523 -16.408 2.658 30.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.070 4.070 3 C -0.228 4.228 4 C -0.160 4.160 5 C -0.170 4.170 6 C 0.423 3.577 7 O -0.421 6.421 8 N -0.370 5.370 9 C -0.031 4.031 10 C 0.008 3.992 11 N -0.087 5.087 12 C -0.196 4.196 13 C -0.137 4.137 14 C 0.103 3.897 15 N -0.370 5.370 16 C -0.372 4.372 17 H 0.091 0.909 18 C -0.209 4.209 19 N -0.580 5.580 20 Si 0.740 3.260 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.212 1.212 24 N -0.117 5.117 25 N -0.067 5.067 26 C -0.017 4.017 27 N -0.081 5.081 28 C -0.078 4.078 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.084 0.916 32 H 0.163 0.837 33 H 0.166 0.834 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.168 0.832 37 H 0.206 0.794 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.219 0.781 41 H 0.065 0.935 42 H 0.118 0.882 43 H 0.117 0.883 44 H 0.095 0.905 45 H 0.100 0.900 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -25.004 -18.202 3.648 31.142 hybrid contribution -0.455 1.437 -0.947 1.780 sum -25.458 -16.766 2.701 30.602 Atomic orbital electron populations 1.20415 0.87552 1.03596 1.03043 1.20630 0.93888 0.85740 1.06787 1.20694 0.92374 0.97998 1.11746 1.21619 0.98251 0.91933 1.04231 1.19653 0.83870 0.93362 1.20066 1.16284 0.79829 0.86135 0.75463 1.90804 1.84890 1.14851 1.51526 1.48653 1.04694 1.09905 1.73783 1.23685 0.89160 0.86936 1.03344 1.23394 0.79633 0.95431 1.00726 1.46981 1.07197 1.33250 1.21264 1.23343 1.00613 1.00875 0.94732 1.22489 0.90305 1.01308 0.99633 1.18966 0.97009 0.84235 0.89526 1.42290 1.75851 1.04488 1.14406 1.19178 1.33479 0.89667 0.94837 0.90935 1.24759 1.02022 0.97663 0.96439 1.69668 1.53472 1.20707 1.14169 0.86236 0.79126 0.81273 0.79332 1.21243 1.21748 1.21193 1.75133 1.24322 1.08079 1.04178 1.78319 0.86003 1.20878 1.21546 1.23399 0.78230 0.97836 1.02265 1.43731 1.04398 1.06702 1.53295 1.22289 1.02053 0.79722 1.03772 0.90551 0.89628 0.91571 0.83710 0.83396 0.87524 0.87489 0.83178 0.79354 0.94261 0.94414 0.78074 0.93454 0.88234 0.88316 0.90490 0.89973 0.87752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.38 10.08 36.01 0.36 -0.02 16 2 C 0.05 0.36 6.87 -81.95 -0.56 -0.20 16 3 C -0.20 -1.68 10.71 -39.98 -0.43 -2.11 16 4 C -0.13 -1.19 10.04 -39.12 -0.39 -1.58 16 5 C -0.06 -0.58 6.89 -81.98 -0.56 -1.14 16 6 C 0.63 6.97 8.02 -12.85 -0.10 6.86 16 7 O -0.54 -7.33 15.40 5.20 0.08 -7.25 16 8 N -0.63 -5.58 3.69 -186.64 -0.69 -6.26 16 9 C 0.09 0.63 6.36 -8.38 -0.05 0.58 16 10 C 0.11 0.94 5.35 -67.68 -0.36 0.58 16 11 N -0.29 -3.72 3.56 -54.44 -0.19 -3.91 16 12 C -0.05 -0.63 10.71 -17.05 -0.18 -0.81 16 13 C 0.00 0.00 6.61 -82.78 -0.55 -0.55 16 14 C 0.23 4.71 6.82 -5.19 -0.04 4.68 16 15 N -0.73 -18.58 5.59 -61.09 -0.34 -18.92 16 16 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 17 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 18 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 19 N -0.93 -28.37 13.06 55.49 0.72 -27.65 16 20 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 N -0.25 -4.89 12.41 33.29 0.41 -4.48 16 25 N -0.09 -1.49 13.17 60.35 0.79 -0.69 16 26 C 0.11 0.86 8.42 -8.51 -0.07 0.79 16 27 N -0.41 -3.67 3.16 -115.61 -0.37 -4.03 16 28 C 0.06 0.42 10.40 59.85 0.62 1.05 16 29 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.22 7.10 -51.93 -0.37 -0.15 16 32 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.15 1.04 5.18 -52.49 -0.27 0.76 16 34 H 0.11 0.63 6.38 -51.93 -0.33 0.30 16 35 H 0.11 0.59 6.29 -51.93 -0.33 0.26 16 36 H 0.15 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.19 1.89 6.77 -52.48 -0.36 1.53 16 38 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.39 10.65 7.66 -40.82 -0.31 10.34 16 41 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.08 0.35 7.14 -51.93 -0.37 -0.02 16 46 H 0.10 0.88 6.16 -51.93 -0.32 0.56 16 LS Contribution 385.68 15.07 5.81 5.81 Total: -1.00 -37.04 385.68 -7.36 -44.40 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -6.01 Total: 4.87 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: -2.56 Total: 0.83 kcal Atomic # 7 Polarization: -66.29 SS G_CDS: 0.34 Total: -65.95 kcal Atomic # 8 Polarization: -7.33 SS G_CDS: 0.08 Total: -7.25 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -37.04 -7.36 -44.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105157287.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 230.077 kcal (2) G-P(sol) polarization free energy of solvation -37.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 193.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 185.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds