Wall clock time and date at job start Wed Apr 1 2020 03:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40171 * 120.36540 * 2 1 4 4 N 1.31259 * 120.35780 * 179.97438 * 3 2 1 5 5 C 1.33988 * 120.87964 * 359.97438 * 4 3 2 6 6 N 1.32501 * 132.34698 * 179.97438 * 5 4 3 7 7 C 1.33465 * 109.75747 * 180.02562 * 6 5 4 8 8 C 1.48133 * 125.32110 * 180.02562 * 7 6 5 9 9 O 1.21525 * 119.99676 * 180.02562 * 8 7 6 10 10 N 1.34767 * 120.00105 * 0.02562 * 8 7 6 11 11 C 1.47020 * 125.64658 * 180.02562 * 10 8 7 12 12 C 1.54325 * 107.27137 * 178.97607 * 11 10 8 13 13 H 1.09004 * 110.72145 * 96.34593 * 12 11 10 14 14 C 1.53004 * 110.71948 * 219.44289 * 12 11 10 15 15 N 1.46499 * 109.47198 * 291.15745 * 14 12 11 16 16 C 1.36939 * 119.99933 * 180.27608 * 15 14 12 17 17 H 1.08001 * 119.99700 * 359.72658 * 16 15 14 18 18 C 1.38810 * 120.00095 * 179.71972 * 16 15 14 19 19 N 1.31624 * 119.99740 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00044 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47173 * 60.00435 * 20 18 16 22 22 H 1.48497 * 109.47172 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47132 * 300.00314 * 20 18 16 24 24 C 1.55155 * 103.10293 * 337.89534 * 12 11 10 25 25 H 1.08997 * 111.00346 * 277.34006 * 24 12 11 26 26 C 1.52999 * 111.00477 * 153.48576 * 24 12 11 27 27 C 1.47420 * 125.65053 * 0.04316 * 10 8 7 28 28 N 1.31990 * 109.35284 * 0.26341 * 7 6 5 29 29 N 1.36878 * 120.22597 * 359.97438 * 5 4 3 30 30 C 1.35685 * 120.36291 * 179.97438 * 2 1 3 31 31 H 1.08994 * 109.47198 * 89.99542 * 1 2 3 32 32 H 1.09000 * 109.47417 * 210.00130 * 1 2 3 33 33 H 1.09002 * 109.46893 * 329.99698 * 1 2 3 34 34 H 1.08002 * 119.82162 * 359.97438 * 3 2 1 35 35 H 1.08997 * 109.88257 * 59.55754 * 11 10 8 36 36 H 1.09003 * 109.88420 * 298.39301 * 11 10 8 37 37 H 1.09009 * 109.46730 * 171.15533 * 14 12 11 38 38 H 1.08998 * 109.46846 * 51.16077 * 14 12 11 39 39 H 0.97001 * 119.99790 * 359.97438 * 15 14 12 40 40 H 0.96998 * 119.99409 * 179.97438 * 19 18 16 41 41 H 1.08998 * 109.46911 * 60.00277 * 26 24 12 42 42 H 1.09004 * 109.46795 * 180.02562 * 26 24 12 43 43 H 1.08998 * 109.47407 * 300.00086 * 26 24 12 44 44 H 1.09002 * 110.36938 * 322.93039 * 27 10 8 45 45 H 1.09002 * 110.37126 * 85.14423 * 27 10 8 46 46 H 1.07998 * 120.48143 * 0.04811 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2156 1.2094 0.0000 4 7 3.5282 1.2092 0.0005 5 6 4.2157 0.0592 0.0015 6 7 5.5142 -0.2044 0.0018 7 6 5.7065 -1.5251 0.0024 8 6 7.0259 -2.1985 0.0034 9 8 7.0886 -3.4122 0.0034 10 7 8.1566 -1.4653 0.0042 11 6 9.5256 -2.0016 0.0047 12 6 10.4896 -0.7968 -0.0207 13 1 10.8247 -0.5496 0.9867 14 6 11.6853 -1.0794 -0.9326 15 7 12.5263 -2.1156 -0.3283 16 6 13.6646 -2.5316 -0.9658 17 1 13.9400 -2.0989 -1.9162 18 6 14.4645 -3.5092 -0.3903 19 7 14.1286 -4.0367 0.7678 20 14 16.0169 -4.0772 -1.2603 21 1 16.9341 -2.9232 -1.4400 22 1 16.6878 -5.1209 -0.4445 23 1 15.6626 -4.6393 -2.5884 24 6 9.6127 0.3432 -0.6027 25 1 9.5823 0.2958 -1.6912 26 6 10.1069 1.7115 -0.1291 27 6 8.2258 0.0073 0.0052 28 7 4.5371 -2.1373 -0.0031 29 7 3.5541 -1.1391 0.0026 30 6 2.1928 -1.1707 0.0005 31 1 -0.3633 0.0001 -1.0276 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5139 34 1 1.6786 2.1465 -0.0004 35 1 9.6817 -2.6200 -0.8792 36 1 9.6925 -2.5910 0.9063 37 1 12.2681 -0.1672 -1.0607 38 1 11.3284 -1.4218 -1.9039 39 1 12.2791 -2.5038 0.5256 40 1 14.6875 -4.7201 1.1697 41 1 11.1357 1.8598 -0.4572 42 1 9.4743 2.4924 -0.5513 43 1 10.0624 1.7573 0.9591 44 1 7.4294 0.4249 -0.6108 45 1 8.1569 0.3897 1.0236 46 1 1.6667 -2.1139 0.0002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106297536.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:27 Heat of formation + Delta-G solvation = 100.558651 kcal Electronic energy + Delta-G solvation = -29242.420166 eV Core-core repulsion = 25169.423734 eV Total energy + Delta-G solvation = -4072.996433 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.20706 -41.48065 -40.07780 -39.15446 -36.51847 -35.88267 -34.52737 -33.97045 -33.06712 -32.13190 -30.90125 -28.76629 -27.50646 -27.16477 -26.31267 -25.29932 -24.22090 -23.99896 -22.37277 -21.22732 -20.86743 -19.72647 -19.21606 -19.12333 -18.15513 -18.05482 -17.48674 -16.94390 -16.63469 -16.52787 -15.82272 -15.41684 -15.22652 -15.15797 -15.00436 -14.65214 -14.43814 -14.20012 -14.10764 -13.85012 -13.63856 -13.61410 -13.34547 -13.29930 -13.06110 -12.94294 -12.91743 -12.73068 -12.51065 -12.21296 -11.98012 -11.94130 -11.79692 -11.60384 -11.53155 -11.24558 -11.09564 -10.92238 -10.89665 -9.93391 -9.92380 -8.98938 -7.93426 -5.22554 -0.82300 -0.58403 0.47357 0.47724 1.40962 1.47151 1.50949 1.56807 1.79285 2.03185 2.22275 2.56836 2.70328 3.06014 3.32652 3.39099 3.44367 3.55111 3.70916 3.73929 3.89830 4.11095 4.16655 4.24680 4.35525 4.39803 4.51639 4.54279 4.63630 4.75524 4.78908 4.81551 4.82329 4.89967 4.94200 4.95430 5.03780 5.05716 5.14311 5.19670 5.23494 5.35748 5.41721 5.49781 5.53228 6.06043 6.16150 6.28052 6.40402 6.68178 7.34493 8.09954 8.32848 9.29911 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.025608 B = 0.002059 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.157068 B =13594.155701 C =14450.425558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.146 4.146 3 C 0.226 3.774 4 N -0.472 5.472 5 C 0.421 3.579 6 N -0.513 5.513 7 C 0.233 3.767 8 C 0.613 3.387 9 O -0.552 6.552 10 N -0.587 5.587 11 C 0.122 3.878 12 C -0.088 4.088 13 H 0.090 0.910 14 C 0.166 3.834 15 N -0.746 5.746 16 C -0.245 4.245 17 H 0.078 0.922 18 C -0.078 4.078 19 N -0.970 5.970 20 Si 0.975 3.025 21 H -0.274 1.274 22 H -0.297 1.297 23 H -0.280 1.280 24 C -0.087 4.087 25 H 0.090 0.910 26 C -0.132 4.132 27 C 0.109 3.891 28 N -0.299 5.299 29 N -0.324 5.324 30 C 0.133 3.867 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.109 0.891 34 H 0.245 0.755 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.039 0.961 38 H 0.019 0.981 39 H 0.373 0.627 40 H 0.250 0.750 41 H 0.063 0.937 42 H 0.078 0.922 43 H 0.062 0.938 44 H 0.105 0.895 45 H 0.081 0.919 46 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.422 18.050 -1.439 39.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.153 4.153 3 C 0.042 3.958 4 N -0.187 5.187 5 C 0.062 3.938 6 N -0.249 5.249 7 C -0.050 4.050 8 C 0.396 3.604 9 O -0.428 6.428 10 N -0.318 5.318 11 C 0.000 4.000 12 C -0.107 4.107 13 H 0.108 0.892 14 C 0.039 3.961 15 N -0.389 5.389 16 C -0.377 4.377 17 H 0.096 0.904 18 C -0.270 4.270 19 N -0.621 5.621 20 Si 0.804 3.196 21 H -0.200 1.200 22 H -0.223 1.223 23 H -0.206 1.206 24 C -0.107 4.107 25 H 0.108 0.892 26 C -0.189 4.189 27 C -0.012 4.012 28 N -0.135 5.135 29 N -0.104 5.104 30 C -0.001 4.001 31 H 0.117 0.883 32 H 0.106 0.894 33 H 0.127 0.873 34 H 0.261 0.739 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.037 0.963 39 H 0.205 0.795 40 H 0.059 0.941 41 H 0.082 0.918 42 H 0.097 0.903 43 H 0.081 0.919 44 H 0.123 0.877 45 H 0.099 0.901 46 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -34.285 17.448 -1.581 38.502 hybrid contribution 0.625 -1.921 0.097 2.022 sum -33.660 15.528 -1.484 37.098 Atomic orbital electron populations 1.20874 0.83287 1.06238 1.05160 1.21254 1.01358 0.90377 1.02332 1.24719 0.86620 1.01503 0.82988 1.68260 1.10898 1.20753 1.18818 1.23018 0.89309 0.83944 0.97576 1.70831 1.12295 1.12763 1.28986 1.23571 0.94013 0.88429 0.99019 1.16181 0.81049 0.84928 0.78224 1.90837 1.86371 1.13943 1.51674 1.48273 1.04551 1.09744 1.69247 1.22016 0.79070 0.97311 1.01580 1.22400 0.93677 0.93656 1.01005 0.89166 1.20775 0.89831 0.91331 0.94118 1.42584 1.26221 1.45474 1.24591 1.19614 0.99671 1.15877 1.02527 0.90431 1.25600 1.02835 1.00338 0.98215 1.69825 1.40986 1.31802 1.19457 0.85190 0.79510 0.77568 0.77355 1.20005 1.22300 1.20650 1.22427 0.92071 0.95313 1.00852 0.89208 1.21648 1.01732 0.93802 1.01756 1.22883 0.98832 0.76684 1.02786 1.78788 0.95663 1.08774 1.30307 1.49031 1.08248 1.07650 1.45490 1.22929 0.77446 1.04355 0.95414 0.88303 0.89422 0.87280 0.73875 0.92421 0.92423 0.94333 0.96330 0.79485 0.94092 0.91803 0.90316 0.91909 0.87695 0.90091 0.77354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.63 10.03 71.24 0.71 1.35 16 2 C -0.15 -0.35 5.87 -19.99 -0.12 -0.47 16 3 C 0.23 1.02 10.96 85.25 0.93 1.95 16 4 N -0.47 -7.97 10.48 -197.53 -2.07 -10.04 16 5 C 0.42 10.34 8.99 261.56 2.35 12.69 16 6 N -0.51 -15.43 8.23 -192.61 -1.59 -17.02 16 7 C 0.23 7.96 7.78 137.40 1.07 9.03 16 8 C 0.61 23.70 7.87 86.87 0.68 24.38 16 9 O -0.55 -25.33 17.40 -3.80 -0.07 -25.39 16 10 N -0.59 -20.36 3.33 -814.49 -2.71 -23.07 16 11 C 0.12 4.62 6.27 86.73 0.54 5.17 16 12 C -0.09 -2.93 2.45 -9.60 -0.02 -2.95 16 13 H 0.09 3.01 8.04 -2.38 -0.02 2.99 16 14 C 0.17 6.69 5.59 86.38 0.48 7.18 16 15 N -0.75 -39.01 5.48 -343.44 -1.88 -40.89 16 16 C -0.25 -14.08 9.99 84.03 0.84 -13.24 16 17 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 18 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 19 N -0.97 -61.55 13.06 21.65 0.28 -61.26 16 20 Si 0.98 47.65 29.55 68.60 2.03 49.68 16 21 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 22 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 23 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 24 C -0.09 -2.23 3.10 -9.33 -0.03 -2.26 16 25 H 0.09 2.27 8.05 -2.39 -0.02 2.25 16 26 C -0.13 -2.67 9.32 71.98 0.67 -2.00 16 27 C 0.11 2.98 5.60 86.93 0.49 3.47 16 28 N -0.30 -9.61 12.78 -52.60 -0.67 -10.28 16 29 N -0.32 -7.35 3.91 -197.57 -0.77 -8.13 16 30 C 0.13 1.34 10.97 83.43 0.92 2.25 16 31 H 0.10 -0.77 8.14 -2.39 -0.02 -0.79 16 32 H 0.09 -0.61 8.09 -2.39 -0.02 -0.63 16 33 H 0.11 -1.11 8.10 -2.39 -0.02 -1.13 16 34 H 0.25 -1.61 8.06 -2.91 -0.02 -1.64 16 35 H 0.06 2.44 7.73 -2.39 -0.02 2.42 16 36 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 38 H 0.02 0.77 8.00 -2.39 -0.02 0.76 16 39 H 0.37 20.90 7.60 -92.71 -0.70 20.20 16 40 H 0.25 15.45 8.31 -92.71 -0.77 14.68 16 41 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.06 1.23 8.08 -2.39 -0.02 1.21 16 44 H 0.11 2.84 6.13 -2.39 -0.01 2.83 16 45 H 0.08 2.08 7.99 -2.39 -0.02 2.07 16 46 H 0.21 0.83 8.06 -2.91 -0.02 0.81 16 Total: -1.00 -88.76 386.56 2.85 -85.91 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: 0.31 Total: 18.08 kcal Atomic # 6 Polarization: 32.42 SS G_CDS: 9.99 Total: 42.41 kcal Atomic # 7 Polarization: -161.29 SS G_CDS: -9.41 Total: -170.70 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -0.07 Total: -25.39 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 2.03 Total: 49.68 kcal Total: -88.76 2.85 -85.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106297536.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.473 kcal (2) G-P(sol) polarization free energy of solvation -88.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds