Wall clock time and date at job start Wed Apr 1 2020 03:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50698 * 119.99629 * 2 1 4 4 N 1.46499 * 109.46991 * 124.47685 * 3 2 1 5 5 C 1.37615 * 127.15207 * 84.59369 * 4 3 2 6 6 C 1.47857 * 126.46685 * 359.97438 * 5 4 3 7 7 N 1.30983 * 126.44136 * 0.02562 * 6 5 4 8 8 O 1.21295 * 110.05156 * 179.97438 * 7 6 5 9 9 C 1.33681 * 110.07043 * 0.02562 * 8 7 6 10 10 C 1.50707 * 126.40786 * 179.97438 * 9 8 7 11 11 N 1.30930 * 107.18763 * 359.76136 * 9 8 7 12 12 N 1.31266 * 107.06930 * 179.97438 * 5 4 3 13 13 N 1.28517 * 109.90639 * 0.02562 * 12 5 4 14 14 C 1.31520 * 110.05749 * 359.74064 * 13 12 5 15 15 N 1.38264 * 126.36706 * 180.27469 * 14 13 12 16 16 C 1.46843 * 110.99688 * 272.00705 * 15 14 13 17 17 C 1.53044 * 109.51995 * 185.83641 * 16 15 14 18 18 C 1.53118 * 109.27878 * 300.82488 * 17 16 15 19 19 C 1.53116 * 109.16128 * 57.65079 * 18 17 16 20 20 H 1.08997 * 109.50095 * 62.29076 * 19 18 17 21 21 C 1.50701 * 109.50294 * 182.40272 * 19 18 17 22 22 H 1.07997 * 120.00073 * 119.80496 * 21 19 18 23 23 C 1.37875 * 120.00012 * 299.80928 * 21 19 18 24 24 N 1.31513 * 120.00282 * 359.97438 * 23 21 19 25 25 Si 1.86802 * 119.99886 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47420 * 59.99964 * 25 23 21 27 27 H 1.48509 * 109.47256 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47388 * 299.99381 * 25 23 21 29 29 C 1.46845 * 110.99548 * 36.21844 * 15 14 13 30 30 H 1.07994 * 120.00150 * 359.72530 * 1 2 3 31 31 H 1.07999 * 119.99852 * 179.71552 * 1 2 3 32 32 H 1.07997 * 119.99894 * 180.27976 * 2 1 3 33 33 H 1.09002 * 109.47281 * 244.47359 * 3 2 1 34 34 H 1.08997 * 109.47583 * 4.47541 * 3 2 1 35 35 H 1.08996 * 109.46987 * 0.02562 * 10 9 8 36 36 H 1.08999 * 109.46717 * 120.02116 * 10 9 8 37 37 H 1.09000 * 109.47210 * 240.01921 * 10 9 8 38 38 H 1.08990 * 109.46589 * 305.85218 * 16 15 14 39 39 H 1.09007 * 109.46176 * 65.82712 * 16 15 14 40 40 H 1.09003 * 109.50338 * 180.87901 * 17 16 15 41 41 H 1.09001 * 109.53368 * 60.78401 * 17 16 15 42 42 H 1.09001 * 109.52191 * 297.74670 * 18 17 16 43 43 H 1.08999 * 109.52169 * 177.56327 * 18 17 16 44 44 H 0.97003 * 120.00217 * 180.02562 * 24 23 21 45 45 H 1.09003 * 109.46440 * 294.17227 * 29 15 14 46 46 H 1.09001 * 109.46549 * 54.15737 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9847 1.3371 1.1386 5 6 4.2551 0.8111 1.1948 6 6 4.9598 0.0978 0.1082 7 7 4.4923 -0.1521 -1.0896 8 8 5.3194 -0.7538 -1.7416 9 6 6.4215 -0.9543 -1.0121 10 6 7.6739 -1.6630 -1.4598 11 7 6.2111 -0.4156 0.1626 12 7 4.7233 1.0622 2.3952 13 7 3.8446 1.6995 3.0832 14 6 2.7637 1.8986 2.3608 15 7 1.6156 2.5536 2.7665 16 6 0.6801 1.6243 3.4125 17 6 -0.6331 2.3493 3.7162 18 6 -0.3516 3.5411 4.6355 19 6 0.6622 4.4685 3.9598 20 1 0.2392 4.8567 3.0333 21 6 0.9895 5.6138 4.8830 22 1 2.0058 5.7661 5.2153 23 6 -0.0084 6.4672 5.3034 24 7 -1.2459 6.2821 4.8985 25 14 0.3972 7.8865 6.4483 26 1 1.3843 8.7831 5.7948 27 1 -0.8409 8.6495 6.7488 28 1 0.9707 7.3556 7.7110 29 6 1.9377 3.6821 3.6491 30 1 -0.5400 0.9352 0.0045 31 1 -0.5400 -0.9353 -0.0046 32 1 1.8500 -0.9353 -0.0046 33 1 2.6286 1.3984 -0.9274 34 1 1.3579 2.1320 0.0802 35 1 7.5530 -1.9984 -2.4898 36 1 8.5203 -0.9792 -1.3973 37 1 7.8540 -2.5239 -0.8160 38 1 0.4852 0.7837 2.7466 39 1 1.1159 1.2578 4.3420 40 1 -1.3217 1.6635 4.2098 41 1 -1.0771 2.7041 2.7861 42 1 0.0556 3.1834 5.5812 43 1 -1.2776 4.0858 4.8194 44 1 -1.9479 6.8828 5.1940 45 1 2.3676 3.3060 4.5775 46 1 2.6562 4.3362 3.1550 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121582661.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:30 Heat of formation + Delta-G solvation = 164.470840 kcal Electronic energy + Delta-G solvation = -30380.158894 eV Core-core repulsion = 26309.933902 eV Total energy + Delta-G solvation = -4070.224992 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -46.84014 -44.29412 -40.05647 -37.49285 -37.20271 -35.81807 -34.79608 -34.01540 -33.54648 -31.86788 -30.77056 -29.79556 -28.10307 -27.05428 -26.31316 -25.55815 -24.11231 -23.31421 -22.64122 -22.15376 -21.00350 -20.45421 -19.48102 -19.22435 -18.60165 -18.13327 -17.62934 -17.21076 -17.02740 -16.50949 -15.94657 -15.64234 -15.56976 -15.37523 -14.77585 -14.62471 -14.49233 -14.26580 -14.22442 -14.16214 -13.66211 -13.51964 -13.17497 -13.04367 -12.97574 -12.85956 -12.73839 -12.67005 -12.62147 -12.39512 -12.01914 -11.96161 -11.84377 -11.50854 -11.44851 -11.36013 -11.12139 -10.82958 -10.65018 -10.45176 -10.38370 -9.69792 -8.10392 -6.22960 -0.48579 0.30878 0.53264 0.97263 1.26175 1.42770 1.43142 1.50921 1.66544 1.73904 1.98349 2.41482 2.61096 2.64681 3.17630 3.39999 3.50156 3.68506 3.76672 3.93500 4.01407 4.06319 4.14522 4.26132 4.33701 4.38710 4.45681 4.52338 4.57614 4.63783 4.68857 4.76301 4.81383 4.84849 4.87505 4.95604 5.01023 5.16100 5.20132 5.24444 5.44839 5.47341 5.55837 5.62567 5.64837 5.96866 6.04760 6.11843 6.36691 6.84953 6.87098 7.27036 7.44272 8.94324 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.018613 B = 0.002690 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.949687 B =10407.739404 C =11366.733441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.197 4.197 3 C 0.135 3.865 4 N -0.442 5.442 5 C 0.231 3.769 6 C 0.238 3.762 7 N -0.366 5.366 8 O 0.103 5.897 9 C 0.207 3.793 10 C -0.061 4.061 11 N -0.486 5.486 12 N -0.258 5.258 13 N -0.341 5.341 14 C 0.384 3.616 15 N -0.457 5.457 16 C 0.075 3.925 17 C -0.102 4.102 18 C -0.107 4.107 19 C 0.060 3.940 20 H 0.010 0.990 21 C -0.539 4.539 22 H 0.046 0.954 23 C 0.023 3.977 24 N -0.908 5.908 25 Si 0.950 3.050 26 H -0.275 1.275 27 H -0.280 1.280 28 H -0.274 1.274 29 C 0.099 3.901 30 H 0.112 0.888 31 H 0.127 0.873 32 H 0.105 0.895 33 H 0.110 0.890 34 H 0.116 0.884 35 H 0.132 0.868 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.089 0.911 39 H 0.034 0.966 40 H 0.086 0.914 41 H 0.068 0.932 42 H 0.025 0.975 43 H 0.070 0.930 44 H 0.263 0.737 45 H 0.032 0.968 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.064 -19.514 -18.016 28.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.216 4.216 3 C 0.015 3.985 4 N -0.134 5.134 5 C -0.036 4.036 6 C -0.033 4.033 7 N -0.072 5.072 8 O 0.036 5.964 9 C -0.012 4.012 10 C -0.119 4.119 11 N -0.220 5.220 12 N -0.103 5.103 13 N -0.188 5.188 14 C 0.027 3.973 15 N -0.183 5.183 16 C -0.051 4.051 17 C -0.140 4.140 18 C -0.146 4.146 19 C 0.041 3.959 20 H 0.029 0.971 21 C -0.578 4.578 22 H 0.064 0.936 23 C -0.177 4.177 24 N -0.547 5.547 25 Si 0.776 3.224 26 H -0.200 1.200 27 H -0.205 1.205 28 H -0.199 1.199 29 C -0.027 4.027 30 H 0.131 0.869 31 H 0.145 0.855 32 H 0.123 0.877 33 H 0.128 0.872 34 H 0.134 0.866 35 H 0.151 0.849 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.107 0.893 39 H 0.053 0.947 40 H 0.104 0.896 41 H 0.087 0.913 42 H 0.044 0.956 43 H 0.089 0.911 44 H 0.072 0.928 45 H 0.051 0.949 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.851 -18.831 -17.103 26.935 hybrid contribution -0.221 0.874 0.457 1.010 sum 8.630 -17.958 -16.647 25.963 Atomic orbital electron populations 1.24260 0.94719 1.04139 0.93583 1.22765 0.96756 0.96252 1.05855 1.21349 0.91910 0.99506 0.85779 1.46415 1.12581 1.41666 1.12773 1.20396 0.84316 1.04327 0.94529 1.21514 0.89971 1.01519 0.90297 1.75024 1.14054 1.13307 1.04776 1.85275 1.20487 1.52441 1.38173 1.29996 0.92968 0.94277 0.83947 1.20914 0.84933 1.00340 1.05690 1.72087 1.12400 1.15362 1.22134 1.74357 1.22910 1.12299 1.00716 1.74850 1.00757 1.17923 1.25227 1.22638 0.94686 0.96211 0.83733 1.58815 1.06722 1.09021 1.43710 1.22227 0.92346 0.93591 0.96936 1.21590 0.94672 0.97256 1.00461 1.21523 1.01498 0.95069 0.96474 1.18590 0.90146 0.92121 0.95025 0.97137 1.21358 0.94322 1.12477 1.29627 0.93550 1.25575 0.94931 0.99682 0.97499 1.69972 1.00669 1.38585 1.45497 0.85743 0.77563 0.79607 0.79521 1.20047 1.20512 1.19939 1.22045 0.99444 0.88746 0.92474 0.86939 0.85533 0.87737 0.87191 0.86631 0.84943 0.86132 0.86002 0.89253 0.94721 0.89583 0.91279 0.95626 0.91141 0.92808 0.94915 0.93183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 14.31 67.78 0.97 -1.16 16 2 C -0.20 -4.09 9.85 25.64 0.25 -3.84 16 3 C 0.13 3.33 6.13 85.63 0.52 3.86 16 4 N -0.44 -14.38 2.81 -520.93 -1.46 -15.85 16 5 C 0.23 8.04 8.00 136.20 1.09 9.13 16 6 C 0.24 6.85 8.04 137.02 1.10 7.96 16 7 N -0.37 -8.58 10.62 -58.85 -0.62 -9.20 16 8 O 0.10 1.75 11.29 74.50 0.84 2.59 16 9 C 0.21 3.04 8.49 88.36 0.75 3.79 16 10 C -0.06 -0.10 10.51 71.24 0.75 0.65 16 11 N -0.49 -12.30 11.58 -302.32 -3.50 -15.81 16 12 N -0.26 -10.54 12.23 -50.76 -0.62 -11.16 16 13 N -0.34 -14.61 11.68 -58.14 -0.68 -15.29 16 14 C 0.38 14.66 6.68 260.21 1.74 16.40 16 15 N -0.46 -17.44 4.61 -706.37 -3.26 -20.70 16 16 C 0.08 2.53 5.39 86.33 0.47 3.00 16 17 C -0.10 -3.54 6.09 30.65 0.19 -3.35 16 18 C -0.11 -4.90 5.03 30.67 0.15 -4.75 16 19 C 0.06 3.01 2.26 -11.49 -0.03 2.99 16 20 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 21 C -0.54 -30.05 8.56 25.60 0.22 -29.83 16 22 H 0.05 2.60 7.74 -2.91 -0.02 2.58 16 23 C 0.02 1.26 5.30 84.65 0.45 1.70 16 24 N -0.91 -51.08 11.36 21.45 0.24 -50.84 16 25 Si 0.95 43.89 29.54 68.60 2.03 45.91 16 26 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 27 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 28 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 29 C 0.10 4.50 4.31 86.33 0.37 4.88 16 30 H 0.11 1.80 7.84 -2.91 -0.02 1.77 16 31 H 0.13 1.58 8.06 -2.91 -0.02 1.55 16 32 H 0.10 2.28 8.06 -2.91 -0.02 2.25 16 33 H 0.11 2.54 7.00 -2.39 -0.02 2.52 16 34 H 0.12 2.83 7.74 -2.39 -0.02 2.81 16 35 H 0.13 -0.59 8.14 -2.39 -0.02 -0.61 16 36 H 0.12 0.01 8.14 -2.39 -0.02 -0.01 16 37 H 0.12 -0.03 8.14 -2.39 -0.02 -0.05 16 38 H 0.09 2.55 8.09 -2.39 -0.02 2.53 16 39 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 40 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 41 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 42 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.07 3.59 6.17 -2.39 -0.01 3.58 16 44 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 45 H 0.03 1.56 8.05 -2.39 -0.02 1.55 16 46 H 0.05 2.37 8.10 -2.39 -0.02 2.35 16 Total: -1.00 -73.37 386.28 2.96 -70.42 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: 0.99 Total: 8.50 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: 9.00 Total: 11.42 kcal Atomic # 7 Polarization: -128.94 SS G_CDS: -9.90 Total: -138.84 kcal Atomic # 8 Polarization: 1.75 SS G_CDS: 0.84 Total: 2.59 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -73.37 2.96 -70.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121582661.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 234.887 kcal (2) G-P(sol) polarization free energy of solvation -73.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds