Wall clock time and date at job start Wed Apr 1 2020 02:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00323 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00389 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00548 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47670 * 179.97438 * 10 9 7 12 12 N 1.30965 * 126.60956 * 269.69185 * 11 10 9 13 13 N 1.29032 * 109.70768 * 179.90844 * 12 11 10 14 14 C 1.29889 * 109.22175 * 0.50060 * 13 12 11 15 15 N 1.34596 * 107.62104 * 359.55300 * 14 13 12 16 16 C 1.47506 * 125.03751 * 180.42342 * 15 14 13 17 17 C 1.53642 * 107.07912 * 294.02625 * 16 15 14 18 18 C 1.50859 * 111.12381 * 80.33277 * 17 16 15 19 19 H 1.08998 * 108.03172 * 49.14593 * 18 17 16 20 20 N 1.46496 * 108.02755 * 165.56451 * 18 17 16 21 21 C 1.34779 * 120.00299 * 211.93276 * 20 18 17 22 22 O 1.21630 * 119.99599 * 359.97438 * 21 20 18 23 23 C 1.47257 * 120.00317 * 179.97438 * 21 20 18 24 24 C 1.46691 * 126.94340 * 359.68253 * 23 21 20 25 25 C 1.34487 * 106.33402 * 179.88640 * 24 23 21 26 26 N 1.36451 * 108.85347 * 0.38217 * 25 24 23 27 27 H 0.97002 * 124.84812 * 179.77104 * 26 25 24 28 28 C 1.34657 * 110.30032 * 359.74097 * 26 25 24 29 29 C 1.50955 * 116.58486 * 287.35068 * 18 17 16 30 30 C 1.51883 * 127.81059 * 179.43015 * 14 13 12 31 31 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 32 32 H 0.96999 * 119.99757 * 359.97438 * 9 7 2 33 33 H 1.09004 * 109.46875 * 299.99762 * 10 9 7 34 34 H 1.09004 * 109.47522 * 59.99613 * 10 9 7 35 35 H 1.08998 * 109.92816 * 53.41773 * 16 15 14 36 36 H 1.08998 * 109.93121 * 174.63171 * 16 15 14 37 37 H 1.08995 * 109.14678 * 319.90729 * 17 16 15 38 38 H 1.08996 * 109.10159 * 200.72250 * 17 16 15 39 39 H 0.97005 * 120.00179 * 31.93066 * 20 18 17 40 40 H 1.08001 * 126.83069 * 0.02562 * 24 23 21 41 41 H 1.07999 * 125.57525 * 180.16087 * 25 24 23 42 42 H 1.07999 * 125.79921 * 180.02562 * 28 26 25 43 43 H 1.08995 * 109.18228 * 312.12426 * 29 18 17 44 44 H 1.09007 * 109.14126 * 192.85756 * 29 18 17 45 45 H 1.09001 * 109.96388 * 4.56474 * 30 14 13 46 46 H 1.09003 * 109.96824 * 125.77960 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1375 0.0014 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4707 0.0011 11 6 5.5939 -2.1954 0.0011 12 7 6.3628 -2.0582 -1.0502 13 7 7.5759 -1.8288 -0.6751 14 6 7.6280 -1.8216 0.6228 15 7 6.3833 -2.0486 1.0818 16 6 6.0042 -2.1109 2.5060 17 6 6.6990 -3.3436 3.1044 18 6 8.1416 -3.0488 3.4327 19 1 8.1753 -2.1182 3.9992 20 7 8.6374 -4.1204 4.2998 21 6 9.5741 -3.8544 5.2317 22 8 10.0080 -2.7245 5.3525 23 6 10.0720 -4.9315 6.1037 24 6 9.6536 -6.3374 6.0948 25 6 10.3705 -6.9514 7.0528 26 7 11.1849 -6.0340 7.6504 27 1 11.7995 -6.2275 8.3754 28 6 11.0139 -4.8219 7.0894 29 6 9.0876 -2.9185 2.2636 30 6 8.8455 -1.6045 1.5045 31 1 -0.4850 0.8401 0.0004 32 1 3.8646 -0.3620 0.0007 33 1 3.8486 -3.0425 0.8909 34 1 3.8493 -3.0422 -0.8891 35 1 6.3393 -1.2096 3.0194 36 1 4.9229 -2.2122 2.5985 37 1 6.6559 -4.1622 2.3860 38 1 6.1784 -3.6395 4.0151 39 1 8.2916 -5.0216 4.2033 40 1 8.9181 -6.7899 5.4463 41 1 10.3089 -7.9986 7.3099 42 1 11.5325 -3.9171 7.3699 43 1 8.9355 -3.7575 1.5846 44 1 10.1139 -2.9363 2.6305 45 1 9.7127 -1.3649 0.8892 46 1 8.6549 -0.7954 2.2097 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001127997696.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:40 Heat of formation + Delta-G solvation = 80.445407 kcal Electronic energy + Delta-G solvation = -29512.188407 eV Core-core repulsion = 25438.319798 eV Total energy + Delta-G solvation = -4073.868608 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.38132 -41.98003 -40.53814 -38.32573 -37.10376 -35.69580 -34.60781 -33.52781 -32.59744 -31.46913 -31.07651 -29.98052 -28.12534 -27.07318 -25.33960 -24.36938 -23.84887 -22.40499 -21.79628 -21.38272 -21.23739 -20.49875 -19.91249 -19.59552 -18.21388 -17.38866 -17.24031 -16.88600 -16.48570 -16.18379 -16.09992 -15.97212 -15.28752 -15.10361 -14.94198 -14.68075 -14.57288 -14.42117 -14.39059 -14.09525 -13.89679 -13.85723 -13.67789 -13.25262 -13.07018 -12.95140 -12.90926 -12.66882 -12.51434 -12.23049 -12.15343 -11.86434 -11.84567 -11.38979 -11.22797 -11.06753 -10.89598 -10.23367 -10.11226 -9.70038 -9.42048 -9.25488 -8.06124 -5.41639 0.77147 0.82992 1.33138 1.37932 1.43129 1.48677 1.59857 1.76040 2.11561 2.43444 2.59170 2.63131 3.12776 3.25530 3.31485 3.46465 3.63159 3.71151 3.78694 3.93570 3.95289 4.06775 4.18387 4.20510 4.30602 4.33014 4.43379 4.50827 4.56128 4.57878 4.65524 4.82834 4.88882 4.99216 5.01537 5.03205 5.04402 5.09162 5.17483 5.20742 5.50919 5.69760 5.81335 5.88957 5.99736 6.16090 6.62090 6.73886 6.97983 7.37069 7.69187 7.70887 7.89824 9.14158 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.017577 B = 0.002271 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.564779 B =12323.977325 C =12867.144427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.050 4.050 3 Si 0.944 3.056 4 H -0.271 1.271 5 H -0.274 1.274 6 H -0.294 1.294 7 C -0.230 4.230 8 H 0.075 0.925 9 N -0.751 5.751 10 C 0.245 3.755 11 C 0.176 3.824 12 N -0.332 5.332 13 N -0.336 5.336 14 C 0.181 3.819 15 N -0.455 5.455 16 C 0.098 3.902 17 C -0.129 4.129 18 C 0.147 3.853 19 H 0.082 0.918 20 N -0.714 5.714 21 C 0.589 3.411 22 O -0.593 6.593 23 C -0.270 4.270 24 C -0.187 4.187 25 C -0.009 4.009 26 N -0.540 5.540 27 H 0.435 0.565 28 C 0.071 3.929 29 C -0.114 4.114 30 C -0.022 4.022 31 H 0.260 0.740 32 H 0.362 0.638 33 H 0.076 0.924 34 H 0.057 0.943 35 H 0.114 0.886 36 H 0.118 0.882 37 H 0.079 0.921 38 H 0.121 0.879 39 H 0.411 0.589 40 H 0.158 0.842 41 H 0.201 0.799 42 H 0.182 0.818 43 H 0.064 0.936 44 H 0.083 0.917 45 H 0.112 0.888 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.304 -16.340 21.275 37.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.243 4.243 3 Si 0.773 3.227 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.221 1.221 7 C -0.361 4.361 8 H 0.092 0.908 9 N -0.397 5.397 10 C 0.117 3.883 11 C -0.093 4.093 12 N -0.172 5.172 13 N -0.176 5.176 14 C -0.088 4.088 15 N -0.145 5.145 16 C -0.023 4.023 17 C -0.168 4.168 18 C 0.043 3.957 19 H 0.100 0.900 20 N -0.364 5.364 21 C 0.379 3.621 22 O -0.475 6.475 23 C -0.280 4.280 24 C -0.211 4.211 25 C -0.137 4.137 26 N -0.136 5.136 27 H 0.274 0.726 28 C -0.068 4.068 29 C -0.153 4.153 30 C -0.062 4.062 31 H 0.069 0.931 32 H 0.194 0.806 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.132 0.868 36 H 0.136 0.864 37 H 0.097 0.903 38 H 0.139 0.861 39 H 0.248 0.752 40 H 0.176 0.824 41 H 0.218 0.782 42 H 0.199 0.801 43 H 0.083 0.917 44 H 0.102 0.898 45 H 0.130 0.870 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 26.881 -15.674 20.037 37.010 hybrid contribution -0.323 0.781 0.895 1.231 sum 26.558 -14.893 20.932 36.950 Atomic orbital electron populations 1.69834 1.06647 1.26680 1.59169 1.25307 0.95924 1.00516 1.02524 0.85582 0.78016 0.80908 0.78226 1.19636 1.19975 1.22060 1.18975 0.81427 0.94067 1.41608 0.90752 1.42636 1.02865 1.02994 1.91244 1.19033 0.78686 0.88733 1.01839 1.24881 0.97119 1.04186 0.83152 1.74475 0.97656 1.19416 1.25700 1.74120 1.12782 1.20694 1.09991 1.25345 0.88710 1.02259 0.92497 1.46272 1.07407 1.51270 1.09554 1.22745 1.03434 1.01378 0.74777 1.21840 0.94143 0.97120 1.03667 1.20254 0.92158 0.92339 0.90986 0.90027 1.45836 1.41925 1.13193 1.35465 1.17734 0.78129 0.87033 0.79168 1.90753 1.60165 1.24263 1.72314 1.20440 1.07748 0.94849 1.04991 1.22323 1.04332 0.91624 1.02787 1.22355 0.96374 0.96826 0.98189 1.41726 1.34071 1.07122 1.30663 0.72557 1.22026 0.99244 0.90190 0.95324 1.21591 1.00681 0.96566 0.96474 1.20615 0.90664 0.99188 0.95700 0.93130 0.80579 0.90669 0.92477 0.86781 0.86388 0.90270 0.86093 0.75203 0.82398 0.78227 0.80103 0.91724 0.89838 0.87000 0.87681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.93 13.97 21.65 0.30 -60.63 16 2 C -0.05 -2.91 5.50 84.86 0.47 -2.44 16 3 Si 0.94 46.24 27.74 68.60 1.90 48.14 16 4 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.27 -13.15 6.52 99.48 0.65 -12.50 16 6 H -0.29 -14.59 7.11 99.48 0.71 -13.89 16 7 C -0.23 -12.69 10.47 84.03 0.88 -11.81 16 8 H 0.07 4.35 8.06 -2.91 -0.02 4.32 16 9 N -0.75 -34.96 5.40 -347.18 -1.87 -36.84 16 10 C 0.24 9.25 6.48 85.63 0.56 9.80 16 11 C 0.18 6.31 7.45 138.12 1.03 7.34 16 12 N -0.33 -13.75 12.24 -50.44 -0.62 -14.37 16 13 N -0.34 -12.64 12.23 -50.01 -0.61 -13.26 16 14 C 0.18 5.20 7.03 138.83 0.98 6.18 16 15 N -0.45 -12.66 2.72 -500.62 -1.36 -14.02 16 16 C 0.10 1.86 6.47 86.40 0.56 2.42 16 17 C -0.13 -1.74 5.09 30.11 0.15 -1.59 16 18 C 0.15 2.23 1.95 43.63 0.08 2.32 16 19 H 0.08 1.44 6.90 -2.39 -0.02 1.42 16 20 N -0.71 -9.97 4.89 -452.50 -2.21 -12.18 16 21 C 0.59 11.29 7.56 86.61 0.65 11.95 16 22 O -0.59 -15.65 16.47 -4.12 -0.07 -15.72 16 23 C -0.27 -4.06 6.29 -19.04 -0.12 -4.18 16 24 C -0.19 -1.82 10.56 23.62 0.25 -1.57 16 25 C -0.01 -0.05 11.89 83.12 0.99 0.94 16 26 N -0.54 -2.73 5.90 -194.55 -1.15 -3.87 16 27 H 0.43 -0.77 8.96 -92.71 -0.83 -1.60 16 28 C 0.07 0.81 11.69 83.92 0.98 1.79 16 29 C -0.11 -1.94 5.14 30.15 0.16 -1.79 16 30 C -0.02 -0.42 6.02 30.45 0.18 -0.24 16 31 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 32 H 0.36 17.17 5.52 -92.71 -0.51 16.66 16 33 H 0.08 2.43 7.46 -2.38 -0.02 2.41 16 34 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.11 1.85 7.87 -2.39 -0.02 1.83 16 36 H 0.12 2.32 7.16 -2.39 -0.02 2.30 16 37 H 0.08 1.15 8.08 -2.39 -0.02 1.13 16 38 H 0.12 1.14 8.12 -2.39 -0.02 1.12 16 39 H 0.41 3.85 7.74 -92.70 -0.72 3.13 16 40 H 0.16 0.94 7.70 -2.91 -0.02 0.92 16 41 H 0.20 -0.24 8.06 -2.91 -0.02 -0.26 16 42 H 0.18 1.75 8.06 -2.91 -0.02 1.73 16 43 H 0.06 1.20 7.91 -2.39 -0.02 1.18 16 44 H 0.08 1.50 7.91 -2.38 -0.02 1.49 16 45 H 0.11 2.06 8.14 -2.39 -0.02 2.05 16 46 H 0.10 1.77 7.89 -2.39 -0.02 1.75 16 Total: -1.00 -84.32 379.88 1.04 -83.28 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: -1.07 Total: 20.34 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: 7.80 Total: 19.12 kcal Atomic # 7 Polarization: -147.65 SS G_CDS: -7.52 Total: -155.17 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: -0.07 Total: -15.72 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 1.90 Total: 48.14 kcal Total: -84.32 1.04 -83.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127997696.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.728 kcal (2) G-P(sol) polarization free energy of solvation -84.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds