Wall clock time and date at job start Wed Apr 1 2020 02:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86795 * 119.99955 * 2 1 4 4 H 1.48495 * 109.47218 * 269.99939 * 3 2 1 5 5 H 1.48495 * 109.47290 * 29.99781 * 3 2 1 6 6 H 1.48499 * 109.47041 * 149.99943 * 3 2 1 7 7 C 1.38810 * 119.99675 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99599 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00136 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99782 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47178 * 179.97438 * 10 9 7 12 12 C 1.35352 * 126.75067 * 95.24053 * 11 10 9 13 13 N 1.35318 * 106.17448 * 180.12668 * 12 11 10 14 14 C 1.46504 * 125.86706 * 179.90695 * 13 12 11 15 15 H 1.08999 * 109.51903 * 154.80198 * 14 13 12 16 16 C 1.53045 * 109.49465 * 274.87555 * 14 13 12 17 17 C 1.53038 * 109.53495 * 181.31875 * 16 14 13 18 18 C 1.53198 * 109.31416 * 298.63832 * 17 16 14 19 19 N 1.46921 * 108.77400 * 54.63149 * 18 17 16 20 20 C 1.34776 * 120.62764 * 126.41554 * 19 18 17 21 21 O 1.21627 * 120.00137 * 176.25723 * 20 19 18 22 22 C 1.47264 * 120.00226 * 356.26370 * 20 19 18 23 23 C 1.46688 * 126.93985 * 41.99583 * 22 20 19 24 24 C 1.34491 * 106.33200 * 179.83518 * 23 22 20 25 25 N 1.36450 * 108.85528 * 0.43169 * 24 23 22 26 26 H 0.96995 * 124.85142 * 179.72799 * 25 24 23 27 27 C 1.34659 * 110.29636 * 359.71648 * 25 24 23 28 28 C 1.46918 * 118.74212 * 306.39523 * 19 18 17 29 29 N 1.28709 * 108.26253 * 359.64371 * 13 12 11 30 30 N 1.28641 * 110.18010 * 0.22780 * 29 13 12 31 31 H 0.96994 * 119.99719 * 0.02562 * 1 2 3 32 32 H 0.96994 * 120.00040 * 359.97438 * 9 7 2 33 33 H 1.08994 * 109.47537 * 59.99402 * 10 9 7 34 34 H 1.09002 * 109.47148 * 299.99221 * 10 9 7 35 35 H 1.07996 * 126.91799 * 0.02562 * 12 11 10 36 36 H 1.09004 * 109.45820 * 61.29917 * 16 14 13 37 37 H 1.08997 * 109.46413 * 301.33747 * 16 14 13 38 38 H 1.09001 * 109.50060 * 178.68655 * 17 16 14 39 39 H 1.09002 * 109.49742 * 58.58585 * 17 16 14 40 40 H 1.09002 * 109.58471 * 294.84865 * 18 17 16 41 41 H 1.08998 * 109.70486 * 174.49733 * 18 17 16 42 42 H 1.07997 * 126.83808 * 0.02562 * 23 22 20 43 43 H 1.07994 * 125.57259 * 180.14527 * 24 23 22 44 44 H 1.08000 * 125.80033 * 179.97438 * 27 25 24 45 45 H 1.09003 * 109.58907 * 173.39857 * 28 19 18 46 46 H 1.08998 * 109.59119 * 293.81629 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0788 -4.8022 0.0012 12 6 0.6274 -5.4824 -1.0785 13 7 -0.2308 -6.4151 -0.6046 14 6 -0.9706 -7.3894 -1.4108 15 1 -1.2122 -8.2591 -0.7999 16 6 -2.2632 -6.7509 -1.9244 17 6 -3.0525 -7.7780 -2.7394 18 6 -2.2173 -8.2173 -3.9463 19 7 -0.9137 -8.6985 -3.4692 20 6 -0.4618 -9.9187 -3.8203 21 8 0.6476 -10.2788 -3.4754 22 6 -1.3111 -10.8160 -4.6216 23 6 -2.1446 -10.4474 -5.7711 24 6 -2.7366 -11.5808 -6.1880 25 7 -2.3402 -12.6077 -5.3816 26 1 -2.6312 -13.5284 -5.4732 27 6 -1.4869 -12.1602 -4.4408 28 6 -0.1119 -7.8241 -2.6025 29 7 -0.2813 -6.3029 0.6766 30 7 0.4884 -5.3499 1.0693 31 1 -0.4849 0.8400 -0.0004 32 1 0.3556 -2.3880 0.0005 33 1 2.6848 -3.7145 0.8904 34 1 2.6846 -3.7146 -0.8895 35 1 0.8966 -5.3136 -2.1106 36 1 -2.0201 -5.8959 -2.5554 37 1 -2.8650 -6.4184 -1.0787 38 1 -3.9839 -7.3298 -3.0853 39 1 -3.2745 -8.6442 -2.1160 40 1 -2.0711 -7.3706 -4.6170 41 1 -2.7312 -9.0190 -4.4766 42 1 -2.2578 -9.4625 -6.1995 43 1 -3.4182 -11.6636 -7.0215 44 1 -1.0209 -12.7608 -3.6737 45 1 0.7625 -8.3673 -2.2440 46 1 0.2061 -6.9455 -3.1637 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185942387.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:24 Heat of formation + Delta-G solvation = 110.876504 kcal Electronic energy + Delta-G solvation = -29285.609684 eV Core-core repulsion = 25213.060667 eV Total energy + Delta-G solvation = -4072.549017 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.33575 -42.13999 -40.76371 -38.68011 -36.84642 -35.64709 -33.78306 -33.37090 -32.32570 -31.62689 -30.78876 -30.05054 -27.73957 -26.82582 -25.50873 -24.77184 -23.52004 -22.99300 -22.12093 -21.60900 -21.30868 -19.92127 -19.43469 -19.14674 -18.20468 -17.54341 -17.29683 -16.72104 -16.59717 -16.17959 -16.03081 -15.56895 -15.49334 -15.27332 -14.98259 -14.91147 -14.64284 -14.51453 -14.36923 -14.11211 -13.87224 -13.83808 -13.60471 -13.07145 -12.99621 -12.77144 -12.68034 -12.53208 -12.31222 -12.15084 -12.08325 -11.98459 -11.85170 -11.80492 -11.11616 -10.99513 -10.94462 -10.24252 -9.88314 -9.61619 -9.24440 -9.00956 -7.91969 -5.22461 0.57500 0.89392 1.13581 1.44391 1.51844 1.53408 1.58149 1.62281 1.94408 2.26602 2.53533 2.60647 3.10030 3.37234 3.38746 3.48234 3.68221 3.83416 3.90800 3.92534 4.03110 4.16417 4.18033 4.23226 4.31443 4.40363 4.44658 4.48688 4.54095 4.58780 4.70053 4.73576 4.86109 4.93179 4.96506 5.06249 5.12442 5.13273 5.16717 5.22792 5.36373 5.52265 5.64785 5.79767 6.00551 6.27623 6.32512 6.71769 7.12270 7.34432 7.48482 8.05082 8.31924 9.31954 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.021758 B = 0.002003 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.591743 B =13976.741814 C =14244.546492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.078 4.078 3 Si 0.980 3.020 4 H -0.282 1.282 5 H -0.298 1.298 6 H -0.269 1.269 7 C -0.244 4.244 8 H 0.084 0.916 9 N -0.738 5.738 10 C 0.235 3.765 11 C -0.033 4.033 12 C -0.021 4.021 13 N -0.277 5.277 14 C 0.136 3.864 15 H 0.112 0.888 16 C -0.129 4.129 17 C -0.119 4.119 18 C 0.089 3.911 19 N -0.598 5.598 20 C 0.591 3.409 21 O -0.593 6.593 22 C -0.261 4.261 23 C -0.190 4.190 24 C 0.002 3.998 25 N -0.539 5.539 26 H 0.435 0.565 27 C 0.062 3.938 28 C 0.111 3.889 29 N -0.111 5.111 30 N -0.296 5.296 31 H 0.251 0.749 32 H 0.371 0.629 33 H 0.029 0.971 34 H 0.063 0.937 35 H 0.223 0.777 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.112 0.888 39 H 0.073 0.927 40 H 0.088 0.912 41 H 0.127 0.873 42 H 0.162 0.838 43 H 0.205 0.795 44 H 0.178 0.822 45 H 0.083 0.917 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.954 -29.799 -18.968 37.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.270 4.270 3 Si 0.809 3.191 4 H -0.209 1.209 5 H -0.225 1.225 6 H -0.194 1.194 7 C -0.375 4.375 8 H 0.102 0.898 9 N -0.381 5.381 10 C 0.108 3.892 11 C -0.172 4.172 12 C -0.173 4.173 13 N -0.071 5.071 14 C 0.034 3.966 15 H 0.130 0.870 16 C -0.168 4.168 17 C -0.157 4.157 18 C -0.031 4.031 19 N -0.330 5.330 20 C 0.383 3.617 21 O -0.475 6.475 22 C -0.272 4.272 23 C -0.213 4.213 24 C -0.127 4.127 25 N -0.135 5.135 26 H 0.275 0.725 27 C -0.075 4.075 28 C -0.013 4.013 29 N -0.090 5.090 30 N -0.163 5.163 31 H 0.059 0.941 32 H 0.202 0.798 33 H 0.047 0.953 34 H 0.081 0.919 35 H 0.239 0.761 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.130 0.870 39 H 0.091 0.909 40 H 0.107 0.893 41 H 0.145 0.855 42 H 0.179 0.821 43 H 0.222 0.778 44 H 0.196 0.804 45 H 0.102 0.898 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.915 -30.610 -17.513 37.224 hybrid contribution 0.526 1.145 -0.319 1.300 sum -11.389 -29.465 -17.832 36.275 Atomic orbital electron populations 1.69861 1.06834 1.26062 1.59525 1.25654 0.96436 1.01344 1.03596 0.85038 0.77554 0.78941 0.77586 1.20891 1.22492 1.19360 1.19700 0.91801 0.84785 1.41226 0.89813 1.42491 1.05473 1.00597 1.89509 1.18969 0.90314 0.80270 0.99674 1.22292 1.03894 1.01438 0.89558 1.23716 0.97290 0.93674 1.02636 1.47564 1.29445 1.24217 1.05894 1.22202 0.92589 0.90078 0.91732 0.86989 1.22005 0.93565 0.99959 1.01227 1.21887 0.99143 0.98297 0.96386 1.22506 0.81591 1.02293 0.96756 1.47849 1.20963 1.15433 1.48768 1.18025 0.85049 0.80540 0.78096 1.90777 1.22477 1.75864 1.58359 1.20206 1.08605 0.94082 1.04281 1.22265 1.00940 0.99920 0.98195 1.22392 1.04449 0.86392 0.99438 1.41681 1.35688 1.12076 1.24012 0.72484 1.21856 0.96005 0.93850 0.95828 1.21649 0.93759 0.95868 0.90066 1.78170 1.19881 1.16959 0.93945 1.75023 1.07965 1.05489 1.27812 0.94066 0.79772 0.95298 0.91931 0.76074 0.90001 0.91354 0.86951 0.90872 0.89340 0.85547 0.82104 0.77812 0.80438 0.89836 0.88550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.44 13.06 21.65 0.28 -61.16 16 2 C -0.08 -4.62 5.50 84.86 0.47 -4.16 16 3 Si 0.98 47.03 29.55 68.60 2.03 49.05 16 4 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 5 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 7 C -0.24 -13.99 9.99 84.03 0.84 -13.15 16 8 H 0.08 4.52 7.83 -2.91 -0.02 4.50 16 9 N -0.74 -39.88 5.59 -347.18 -1.94 -41.83 16 10 C 0.24 10.30 6.82 85.63 0.58 10.89 16 11 C -0.03 -1.33 6.61 41.60 0.28 -1.05 16 12 C -0.02 -0.67 10.61 83.49 0.89 0.22 16 13 N -0.28 -8.26 3.26 -326.79 -1.06 -9.32 16 14 C 0.14 2.84 3.28 45.07 0.15 2.99 16 15 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 16 C -0.13 -2.13 5.49 30.62 0.17 -1.96 16 17 C -0.12 -1.14 6.08 30.67 0.19 -0.96 16 18 C 0.09 0.85 5.78 86.37 0.50 1.35 16 19 N -0.60 -10.05 2.97 -822.99 -2.45 -12.49 16 20 C 0.59 12.76 7.61 86.62 0.66 13.42 16 21 O -0.59 -18.19 16.52 -4.12 -0.07 -18.26 16 22 C -0.26 -3.95 5.47 -19.04 -0.10 -4.06 16 23 C -0.19 -1.65 8.64 23.62 0.20 -1.45 16 24 C 0.00 0.01 11.89 83.12 0.99 1.00 16 25 N -0.54 -2.11 5.90 -194.56 -1.15 -3.26 16 26 H 0.44 -1.21 8.96 -92.71 -0.83 -2.04 16 27 C 0.06 0.68 11.87 83.91 1.00 1.67 16 28 C 0.11 2.16 5.45 86.36 0.47 2.63 16 29 N -0.11 -4.23 13.16 37.02 0.49 -3.75 16 30 N -0.30 -12.99 12.41 -48.60 -0.60 -13.59 16 31 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 32 H 0.37 21.84 7.66 -92.71 -0.71 21.13 16 33 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.22 5.07 7.17 -2.91 -0.02 5.05 16 36 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 37 H 0.07 1.35 8.14 -2.39 -0.02 1.34 16 38 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.13 0.88 4.06 -2.39 -0.01 0.87 16 42 H 0.16 0.90 7.19 -2.91 -0.02 0.88 16 43 H 0.21 -0.66 8.06 -2.91 -0.02 -0.69 16 44 H 0.18 1.63 8.06 -2.91 -0.02 1.61 16 45 H 0.08 2.04 7.02 -2.39 -0.02 2.02 16 46 H 0.10 1.61 6.91 -2.39 -0.02 1.59 16 Total: -1.00 -86.98 381.20 2.29 -84.69 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: -0.50 Total: 22.53 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: 7.27 Total: 7.37 kcal Atomic # 7 Polarization: -138.96 SS G_CDS: -6.43 Total: -145.40 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: -0.07 Total: -18.26 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.05 kcal Total: -86.98 2.29 -84.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185942387.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.568 kcal (2) G-P(sol) polarization free energy of solvation -86.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds